View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1202_low_71 (Length: 249)
Name: NF1202_low_71
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_71 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 40393882 - 40393657
Alignment:
| Q |
1 |
cccacatttcttctatcaatttttcctatgttttcttttcctccatcatgggatgaaaatacactaataatctaaatatttgtattttcctttattaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
40393882 |
cccacatttcttctatcaatttttcct--gttttcttttcctccatcattggatggaaatacactaataatctaagtatttgtattt-cctttattaata |
40393786 |
T |
|
| Q |
101 |
tgattcatggtttgagttaataattacactcacttaaaaatctgaaggtgtaaattaacaagtgtgtattttttgtcaagtaacttagttactctagttc |
200 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
40393785 |
tgattcatggtttgagttaat---tacagtcacttaaaaatctgaaggtgtaaattaacaagtgtgtattttttgtcaagtaacttagttactatagttc |
40393689 |
T |
|
| Q |
201 |
atctcttacaatgaataagtggagtgtataatgt |
234 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||| |
|
|
| T |
40393688 |
atctcttacgatgaataagtg--gtgtataatgt |
40393657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 40385077 - 40384981
Alignment:
| Q |
20 |
tttttcctatgttttcttttcctccatcatgggatgaaaatacactaataatctaaatatttgtattttcctttattaatatgattcatggtttgag |
116 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40385077 |
tttttcctatgttttcttttcctccatgatgggatggaaatacactagtaatctaaatatttgtattttcctttattaatttgattcatggtttgag |
40384981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University