View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1202_low_75 (Length: 218)

Name: NF1202_low_75
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1202_low_75
NF1202_low_75
[»] chr5 (13 HSPs)
chr5 (1-130)||(23730438-23730567)
chr5 (1-130)||(23686836-23686965)
chr5 (125-218)||(23733183-23733276)
chr5 (52-130)||(23733311-23733389)
chr5 (125-218)||(23730310-23730403)
chr5 (125-202)||(23779757-23779834)
chr5 (125-202)||(23866710-23866787)
chr5 (1-102)||(23645900-23646001)
chr5 (1-102)||(23812573-23812674)
chr5 (45-130)||(23779635-23779722)
chr5 (45-130)||(23866588-23866675)
chr5 (148-218)||(23645728-23645798)
chr5 (148-218)||(23812776-23812846)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 23730567 - 23730438
Alignment:
Q  1 taaggtatcgtggaacaacaatgacttgttcaaattccgctgcactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23730567 taaggtatcgtggaacaacaatgacttgttcaaattccgttacactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaa 23730468  T
Q  101 ctgtcttacagaataatcaaaactaggtgc 130  Q
    ||||||||||||||||||||||||||||||    
T  23730467 ctgtcttacagaataatcaaaactaggtgc 23730438  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 23686965 - 23686836
Alignment:
Q  1 taaggtatcgtggaacaacaatgacttgttcaaatt-ccgctgcactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaa 99  Q
    |||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  23686965 taaggtatcgtggaacaacaatgacttgttcaaatttccgttacactacagcgactaattcataacgctgaaaaaaaatatgaaatgaaaaggaatacaa 23686866  T
Q  100 actgtcttacagaataatcaaaactaggtgc 130  Q
    ||||||||||| ||||| | |||||||||||    
T  23686865 actgtcttacaaaataa-ccaaactaggtgc 23686836  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 23733276 - 23733183
Alignment:
Q  125 aggtgcatattcatttaccttgttagtcgcatattccatgtgtcataacctcaattaaaaggcaccataacatagaagaagtaaaacaatactc 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  23733276 aggtccatattcatttaccttgttagtcgcatattccatgtgtcataacctcaatgaaaaggcaccataacatagacgaagtaaaacaatactc 23733183  T

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Target: chr5; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 23733389 - 23733311
Alignment:
Q  52 gactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaactgtcttacagaataatcaaaactaggtgc 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23733389 gactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaactgtcttacagaataatcaaaactaggtgc 23733311  T

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Target: chr5; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 218
Target Start/End: Complemental strand, 23730403 - 23730310
Alignment:
Q  125 aggtgcatattcatttaccttgttagtcgcatattccatgtgtcataacctcaattaaaaggcaccataacatagaagaagtaaaacaatactc 218  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| ||  |||| ||||||||||||||| |||||||    
T  23730403 aggtccatattcatttaccttgttagtcgcatattccatgtgtcataactttaatgaaaagacagtataaaatagaagaagtaaaataatactc 23730310  T

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Target: chr5; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 23779757 - 23779834
Alignment:
Q  125 aggtgcatattcatttaccttgttagtcgcatattccatgtgtcataacctcaattaaaaggcaccataacatagaag 202  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  23779757 aggtccatattcattcatcttgttagtcgcatattccatgtgtcataacctcaatgaaaagacaccataacatagaag 23779834  T

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Target: chr5; HSP #7
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 125 - 202
Target Start/End: Original strand, 23866710 - 23866787
Alignment:
Q  125 aggtgcatattcatttaccttgttagtcgcatattccatgtgtcataacctcaattaaaaggcaccataacatagaag 202  Q
    |||| |||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  23866710 aggtccatattcattcatcttgttagtcgcatattccatgtgtcataacctcaatgaaaagacaccataacatagaag 23866787  T

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Target: chr5; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23646001 - 23645900
Alignment:
Q  1 taaggtatcgtggaacaacaatgacttgttcaaattccgctgcactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaa 100  Q
    ||||||||||  |||||| | |||||||||||||||| | |   ||| |||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  23646001 taaggtatcgcagaacaatagtgacttgttcaaattctgttatgctatagcgacgaattcataacgctgaataaaattatgatatggaaaggaatacaaa 23645902  T
Q  101 ct 102  Q
    ||    
T  23645901 ct 23645900  T

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Target: chr5; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 23812573 - 23812674
Alignment:
Q  1 taaggtatcgtggaacaacaatgacttgttcaaattccgctgcactacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaa 100  Q
    ||||||||||  |||||| | |||||||||||||||| | |   ||| |||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  23812573 taaggtatcgcagaacaatagtgacttgttcaaattctgttatgctatagcgacgaattcataacgctgaataaaattatgatatggaaaggaatacaaa 23812672  T
Q  101 ct 102  Q
    ||    
T  23812673 ct 23812674  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 23779635 - 23779722
Alignment:
Q  45 ctacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaact--gtcttacagaataatcaaaactaggtgc 130  Q
    ||||||||| ||||||||| |||| |||| || ||||| ||| |||||||||||||||   || |||| |||||||||||||||||||    
T  23779635 ctacagcgagtaattcatatcgctaaatacaattatgatatgtaaaggaatacaaactacatcctacaaaataatcaaaactaggtgc 23779722  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 23866588 - 23866675
Alignment:
Q  45 ctacagcgactaattcataacgctgaataaaaatatgaaatggaaaggaatacaaact--gtcttacagaataatcaaaactaggtgc 130  Q
    ||||||||| ||||||||| |||| |||| || ||||| ||| |||||||||||||||   || |||| |||||||||||||||||||    
T  23866588 ctacagcgagtaattcatatcgctaaatacaattatgatatgtaaaggaatacaaactacatcctacaaaataatcaaaactaggtgc 23866675  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 218
Target Start/End: Complemental strand, 23645798 - 23645728
Alignment:
Q  148 tagtcgcatattccatgtgtcataacctcaattaaaaggcaccataacatagaagaagtaaaacaatactc 218  Q
    ||||||| | ||||||||||||||||||| || ||||| || ||||||| |||||||| |||| |||||||    
T  23645798 tagtcgcgttttccatgtgtcataacctcgatgaaaagacagcataacaaagaagaaggaaaataatactc 23645728  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 218
Target Start/End: Original strand, 23812776 - 23812846
Alignment:
Q  148 tagtcgcatattccatgtgtcataacctcaattaaaaggcaccataacatagaagaagtaaaacaatactc 218  Q
    ||||||| | ||||||||||||||||||| || ||||| || ||||||| |||||||| |||| |||||||    
T  23812776 tagtcgcgttttccatgtgtcataacctcgatgaaaagacagcataacaaagaagaaggaaaataatactc 23812846  T

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