View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_78 (Length: 207)
Name: NF1202_low_78
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_78 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 21523308 - 21523207
Alignment:
| Q |
4 |
gaatatctgataccaaccctggtcttgttatcttactttcatcaacatccatttctccaatgagcattttgagcacagaagacatggttggtcggagcct |
103 |
Q |
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| T |
21523308 |
gaatatctgataccaagcctggtcttgttatcttactttcatcaacatccatttctccaatgagcattttgagcacagaagacatggttggtcggagcct |
21523209 |
T |
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| Q |
104 |
ag |
105 |
Q |
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|| |
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| T |
21523208 |
ag |
21523207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 21530379 - 21530286
Alignment:
| Q |
8 |
atctgataccaaccctggtcttgttatcttactttcatcaacatccatttctccaatgagcattttgagcacagaagacatggttggtcggagc |
101 |
Q |
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| T |
21530379 |
atctgaaatcaagcctggttttgttatcttggtttcattgatatccatttctccggtgagcattttgaccacagaagacatggttggccggagc |
21530286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 21517566 - 21517487
Alignment:
| Q |
22 |
ctggtcttgttatcttactttcatcaacatccatttctccaatgagcattttgagcacagaagacatggttggtcggagc |
101 |
Q |
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| T |
21517566 |
ctggttttgttatcttactttcgtcgatatctatttctccggtgagcatcttgatcgcagaagacatggttggccggagc |
21517487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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