View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1202_low_9 (Length: 688)
Name: NF1202_low_9
Description: NF1202
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1202_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 511; Significance: 0; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 7 - 659
Target Start/End: Original strand, 3685958 - 3686623
Alignment:
| Q |
7 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaact |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3685958 |
tcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttttaacacatacacactgtgatttccgctcattcatgaact |
3686057 |
T |
|
| Q |
107 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3686058 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaaaaaaatatga |
3686157 |
T |
|
| Q |
207 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctctagatatcgtcatttctgc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3686158 |
cagttatgttagggagaaaagaaaaaagaaagtggttacttgctagttgccgagtggttttgtgagggagggaccaagctctagatatcgtcatttctgc |
3686257 |
T |
|
| Q |
307 |
taaggcatctagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaac-gatg------atatat |
399 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | | |
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| T |
3686258 |
caaggcatcaagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaacagatgtaatgaacaaaa |
3686357 |
T |
|
| Q |
400 |
ggcataaaccatatatagtactaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaagaagaa------gn |
493 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3686358 |
ggcataaaccatatataatactaacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgatgatacaatgaaaaagaaaaaaagaa |
3686457 |
T |
|
| Q |
494 |
nnnnnnnnnnnnnncaactttgttttacgatcttgctatcccccttcatccaattccttcaaattccacttcgttgtttggagaaatacgaccttcatcc |
593 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3686458 |
aaaaaaaggaaaaacaactttgttttacgatcttgctatcccccttcatccaattccttcaaattccacttcgctgtttggagaaatacgaccttcatcc |
3686557 |
T |
|
| Q |
594 |
aaatgcaaaatagggcatgtccggatttcactatgtcggatgatcctgagtatttaaacttgtttt |
659 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
3686558 |
aaatgcaaaatagggcatgtccggatttcactatgtcggatgatcatgagtatttaaacttgtttt |
3686623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 8 - 207
Target Start/End: Original strand, 3693725 - 3693925
Alignment:
| Q |
8 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaact |
106 |
Q |
| |
|
|||||||||| ||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
3693725 |
cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggtttcttataacacatacacactgtgatttccgctcattcctgaacc |
3693824 |
T |
|
| Q |
107 |
atacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaatatga |
206 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||||||| | |||||||||||||||||||||| |
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|
| T |
3693825 |
atacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatgatgaggtgtgtttttgataaacaacagtactagaaataaaatatga |
3693924 |
T |
|
| Q |
207 |
c |
207 |
Q |
| |
|
| |
|
|
| T |
3693925 |
c |
3693925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 26 - 214
Target Start/End: Original strand, 3679213 - 3679409
Alignment:
| Q |
26 |
aacgcatcgcgaactgatgtggcagtaagtgattggtt-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctt |
124 |
Q |
| |
|
|||||||| |||| |||| |||||| |||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||| |
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|
| T |
3679213 |
aacgcatcacgaattgatttggcagcaagtgattggtttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-ctt |
3679311 |
T |
|
| Q |
125 |
tataattaccac----ac---gtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaat-aaaatatgacagttatg |
214 |
Q |
| |
|
|||||||| || || ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
3679312 |
aataattacaacgtgtacggtgtatcgattcgggaagatcgtgatgaggcatgttcttgataaatagcagtactagaaatgaaaatatgacagttatg |
3679409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 3675532 - 3675716
Alignment:
| Q |
8 |
cgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtgatttccgctcattcatgaacta |
107 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| |||||| |
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|
| T |
3675532 |
cgaagaatatagatcacgaacgcatcacaaactgatgtggttataagt----------tataacacttacgtgctgtcatttccgctcattccagaacta |
3675621 |
T |
|
| Q |
108 |
tacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagcagtactagaaataaaat |
202 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
3675622 |
tacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttcttgataaatagtagtactagaaataaaat |
3675716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 298 - 389
Target Start/End: Original strand, 3703297 - 3703388
Alignment:
| Q |
298 |
catttctgctaaggcatctagatatggaatttgtttgaagtaacttctaactaagacatgaaacgatgataataataagatagacatgaaac |
389 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||| |||||||| |||||||||| |||||||| |
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|
| T |
3703297 |
catttttgctaaggcatctagatatggaatttatttgaagtagcttgtaactaagacatgaaatgatgataacaataagataggcatgaaac |
3703388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 308 - 373
Target Start/End: Original strand, 3675811 - 3675877
Alignment:
| Q |
308 |
aaggcatctagatatggaatttgtttgaagtaa-cttctaactaagacatgaaacgatgataataat |
373 |
Q |
| |
|
||||||||| |||||||||||| |||||||||| |||||||||||||||||||| ||||| |||||| |
|
|
| T |
3675811 |
aaggcatcttgatatggaatttatttgaagtaagcttctaactaagacatgaaatgatgacaataat |
3675877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 403 - 477
Target Start/End: Complemental strand, 3687100 - 3687028
Alignment:
| Q |
403 |
ataaaccatatatagtactaacatagtaagaacaattt-agaaaacaaaagcacaagatccctttcaaatgatgat |
477 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| | |||| ||||||||| |||||||||||||||||||| |
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|
| T |
3687100 |
ataaaccatatata---ctaacatagtaagaacaattttaaaaaagaaaagcacatgatccctttcaaatgatgat |
3687028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 657
Target Start/End: Complemental strand, 3650747 - 3650715
Alignment:
| Q |
625 |
tatgtcggatgatcctgagtatttaaacttgtt |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3650747 |
tatgtcggatgatcctgagtatttaaacttgtt |
3650715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 625 - 657
Target Start/End: Original strand, 3706790 - 3706822
Alignment:
| Q |
625 |
tatgtcggatgatcctgagtatttaaacttgtt |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
3706790 |
tatgtcggatgatcctgagtatttaaacttgtt |
3706822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 34676634 - 34676702
Alignment:
| Q |
220 |
gagaaaagaaaaaagaaagtggttacttgctagttgctgagtggttttgtgagggagtgaccaagctct |
288 |
Q |
| |
|
|||||||||||| ||||||||||| | | ||||| ||||||||| |||||||||| ||| ||||||| |
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|
| T |
34676634 |
gagaaaagaaaagggaaagtggttattgggtagttcttgagtggttatgtgagggagagacaaagctct |
34676702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 419 - 478
Target Start/End: Original strand, 41979687 - 41979749
Alignment:
| Q |
419 |
actaacatagtaagaacaatttagaaaacaaaagcacaagatccct---ttcaaatgatgata |
478 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||| |
|
|
| T |
41979687 |
actaacatagtaagaacaatttaataaacaaatgcacctgatcccttcattcaaatgatgata |
41979749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 422 - 474
Target Start/End: Original strand, 4432410 - 4432462
Alignment:
| Q |
422 |
aacatagtaagaacaatttagaaaacaaaagcacaagatccctttcaaatgat |
474 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| |||||| |||||||||| |
|
|
| T |
4432410 |
aacatagtaagaacaatttagaaagccaattcacatgatccccttcaaatgat |
4432462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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