View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12030_high_14 (Length: 288)
Name: NF12030_high_14
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12030_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 38544598 - 38544867
Alignment:
| Q |
1 |
ggaggttgcaaaggggagaatggtggaagagttgggcggtttgataggtannnnnnnagggtaaaaagcacggcctatggagaagaaactaccattagtg |
100 |
Q |
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| T |
38544598 |
ggaggttgcaaaggggagaatggtggaagagttgggtggtttgataggtatttttttagggtaaaaagcacggcctatggagaagaaactaccattagtg |
38544697 |
T |
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| Q |
101 |
agagtgagaatagaggtctgaatggtggcatttccatataggatgatgtttgtggagttgaagtttgtattatagacaaattcagtagtggaaacacaac |
200 |
Q |
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| T |
38544698 |
agagtgagaatagaggtctgaatggtggcatttccatataggatgatgtttgtggagttgaagtttgtattatagacaaattcagtagtggaaacacaac |
38544797 |
T |
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| Q |
201 |
atataattatggttacagtgtgaagaagagtgataaggagcttaagttgaggcattgtcaatggattaat |
270 |
Q |
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| T |
38544798 |
atataattatggttacagtgtgaagaagagtgataaggagcttaagttgaggcattgtcaatggattaat |
38544867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 38352126 - 38351965
Alignment:
| Q |
93 |
cattagtgagagtgagaatagaggtctgaatggtggcatttccatataggatgatgtttgtggagttgaagtttgtattatagacaaattcagtagtgga |
192 |
Q |
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| T |
38352126 |
cattagtcagagtgagaatggatttgttaatggttgcatttccatataggataatgtttttggagttgaagtttgtattatagacaaattcagtagtgga |
38352027 |
T |
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| Q |
193 |
aacacaacatataattatggttacagtgtgaagaagagtgataaggagcttaagttgaggcattg |
257 |
Q |
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| T |
38352026 |
aacataac---tcaaaatggttaaagtgtaaagaagagtgaaaagtagcttaagttgaggcattg |
38351965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 38548404 - 38548492
Alignment:
| Q |
98 |
gtgagagtgagaatagaggtctgaatggtggcatttccatataggatgatgtttgtggagttgaagtttgtattatagacaaattcagt |
186 |
Q |
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| T |
38548404 |
gtgagagtgaggattgaattttgaattgttgcatttccattaaggtttatgtttgttgagttgaagtttctgttataaacaaattcagt |
38548492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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