View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12030_high_8 (Length: 390)
Name: NF12030_high_8
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12030_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 8e-77; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 30682123 - 30681966
Alignment:
| Q |
62 |
aatttggagaatcaactaagttcgatgatgaggccgagggaggcatggcagaaaagaagaattatacaattgcattgtacggatgaaaacatagcttggc |
161 |
Q |
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| T |
30682123 |
aatttggagaatcaactaagttcgatgatgaggccgagggaggcatggcggaaaagaagaattatacaattgcattgtagagatgaaaacatagcttggc |
30682024 |
T |
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| Q |
162 |
aaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgctgat |
219 |
Q |
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| T |
30682023 |
aaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgctgat |
30681966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 217 - 376
Target Start/End: Original strand, 30055296 - 30055456
Alignment:
| Q |
217 |
gatgtgttcgacacaggcacaaccacccttcatttgtgcaacgtctgcaagaagtaaa-caatcactttgctctagctagaatcattaaaataataagca |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30055296 |
gatgtgttcgactcaggcacaaccacccttcatttgtgcaacgtctgcaagaagtaaatcaatcactttgctctagctagaatcattaaaataataagca |
30055395 |
T |
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| Q |
316 |
tttcagagtttgagatattaagaattctattgactttgttttatgtcgaatcctagttctt |
376 |
Q |
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| T |
30055396 |
tttcagagtttgagagattaagaattctattgactttgttttatgtcgaatcctagttctt |
30055456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 30681929 - 30681769
Alignment:
| Q |
217 |
gatgtgttcgacacaggcacaaccacccttcatttgtgcaacgtctgcaagaagtaaa-caatcactttgctctagctagaatcattaaaataataagca |
315 |
Q |
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| T |
30681929 |
gatgtgttcgactcaggcacaaccacccttcatttgtgcaacgtctgcaagcagtaaatcaaccactttgctctagctagaatcattaaaataataagca |
30681830 |
T |
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| Q |
316 |
tttcagagtttgagatattaagaattctattgactttgttttatgtcgaatcctagttctt |
376 |
Q |
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| T |
30681829 |
tttcagagtttgagagatcgagaattctattgactttgttttatgtcgaatcctagttctt |
30681769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 62 - 215
Target Start/End: Original strand, 30055102 - 30055255
Alignment:
| Q |
62 |
aatttggagaatcaactaagttcgatgatgaggccgagggaggcatggcagaaaagaagaattatacaattgcattgtacggatgaaaacatagcttggc |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
30055102 |
aatttggagaatcaactaagttcgatgatgaggccgagggaggcatggtggaaaagaagaattatacaattgcattgtagagatgaaaacgtagcttggc |
30055201 |
T |
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| Q |
162 |
aaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgc |
215 |
Q |
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| T |
30055202 |
aaaacatgaaaacaatgagctctatctgaacgttaatgcaaaacaatttcacgc |
30055255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 62 - 215
Target Start/End: Complemental strand, 30718375 - 30718222
Alignment:
| Q |
62 |
aatttggagaatcaactaagttcgatgatgaggccgagggaggcatggcagaaaagaagaattatacaattgcattgtacggatgaaaacatagcttggc |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30718375 |
aatttggagaatcaactaagttcgatgatgaggccgaggggggcatggcggaaaagaagaattatacaattgcattgtagagatgaaaacatagcttggc |
30718276 |
T |
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| Q |
162 |
aaaacatggaaacaatgagctctatctgaacgttaatgcaaaacaattttacgc |
215 |
Q |
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| T |
30718275 |
aaaacatgaaaacagtgagctctatctgaacgttaatgcaaaccaattttacgc |
30718222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 274 - 381
Target Start/End: Complemental strand, 30718126 - 30718019
Alignment:
| Q |
274 |
acaatcactttgctctagctagaatcattaaaataataagcatttcagagtttgagatattaagaattctattgactttgttttatgtcgaatcctagtt |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
30718126 |
acaatcactttgctctagctagaatcattaaaataataagcatttcagagtttgagagatcgagaattctattgactttgttttatgtcgaatcctagtt |
30718027 |
T |
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| Q |
374 |
cttctcat |
381 |
Q |
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||| |||| |
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| T |
30718026 |
cttatcat |
30718019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 30054689 - 30054730
Alignment:
| Q |
18 |
accctaattctcttaaacttcaccatatccatggtggaatca |
59 |
Q |
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| T |
30054689 |
accctaattctcttaaacttcaccatatccatggtggaatca |
30054730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 30682641 - 30682604
Alignment:
| Q |
22 |
taattctcttaaacttcaccatatccatggtggaatca |
59 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
30682641 |
taattctcttaaacttcaccatatccatggtggaatca |
30682604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 30478648 - 30478704
Alignment:
| Q |
307 |
taataagcatttcagag-tttgagatattaagaattctattgactttgttttatgtc |
362 |
Q |
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| T |
30478648 |
taataagtatttcagagatttgagagattgagaattctattaactttgttttatgtc |
30478704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 30430880 - 30430908
Alignment:
| Q |
31 |
taaacttcaccatatccatggtggaatca |
59 |
Q |
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| T |
30430880 |
taaacttcaccatatccatggtggaatca |
30430908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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