View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12030_low_1 (Length: 738)
Name: NF12030_low_1
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12030_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 631; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 18 - 648
Target Start/End: Original strand, 40892550 - 40893180
Alignment:
| Q |
18 |
catacctagtttcttggtaataagcgttgaggttgaggttcttcaacaggcttcatctaagaacttaaaaaattgttttggatttccaagagctacttga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40892550 |
catacctagtttcttggtaataagcgttgaggttgaggttcttcaacaggcttcatctaagaacttaaaaaattgttttggatttccaagagctacttga |
40892649 |
T |
|
| Q |
118 |
agcatgttttgtgatacagttcatcagtgtgaaaggagttagataaataaactaaacattgatatttaatagtaatggatagcaagttcaagtaagatca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40892650 |
agcatgttttgtgatacagttcatcagtgtgaaaggagttagataaataaactaaacattgatatttaatagtaatggatagcaagttcaagtaagatca |
40892749 |
T |
|
| Q |
218 |
acaacctaattatatacttaacgatagatagcaaatagactttttgttctagtgagctaatcaaaatcaacagcacagaccaaacttgtatatgtaaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40892750 |
acaacctaattatatacttaacgatagatagcaaatagactttttgttctagtgagctaatcaaaatcaacagcacagaccaaacttgtatatgtaaata |
40892849 |
T |
|
| Q |
318 |
ttcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcacacacaaacaacaataatatgagctaaaaaattaagcac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40892850 |
ttcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttattcacacacaaacaacaataatatgagctaaaaaattaagcac |
40892949 |
T |
|
| Q |
418 |
tgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattggccggaaccttcttctaagattgtatttatgttgataacca |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40892950 |
tgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattggccggaaccttcttctaagattgtatttatgttgataacca |
40893049 |
T |
|
| Q |
518 |
tgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaacacctaaatacaagagtaaggtggtggtagtgtacctcttcaaaa |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40893050 |
tgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaacacctaaatacaagagtaaggtggtggtagtgtacctcttcaaaa |
40893149 |
T |
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| Q |
618 |
aaggaacgtaatcttgatcctattgtttagt |
648 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
40893150 |
aaggaacgtaatcttgatcctattgtttagt |
40893180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 44143965 - 44144236
Alignment:
| Q |
18 |
catacctagtttcttggtaataagcgttgaggttgaggttcttcaacaggcttcatctaagaacttaaaaaattgttttgg---------atttccaaga |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44143965 |
catacctagtttcttggtaataagcgttgaggttgaggttcttcaacaggcttcatctaagaacttaaaaaattgttttggtcaagtgtgatttccaaga |
44144064 |
T |
|
| Q |
109 |
gctacttgaagcatgttttgtgatacagttcatcagtgtgaaaggagttagataaataaactaaacattgatatttaatagtaatggatagcaagttcaa |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
44144065 |
gctacttgaagcatgttttgtgatacagttcatcagtgtgaaaggagttagataaataaacttaacattgatatttaatagtaatggatagcaagttcaa |
44144164 |
T |
|
| Q |
209 |
gtaagatcaacaacctaattatatacttaacgatagatagcaaatagactttttgttctagtgagctaatca |
280 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44144165 |
gtaagatcaacaacctaattatatacttaacgatagatagcaaatagactttttgttctagtgagctaatca |
44144236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 277 - 491
Target Start/End: Original strand, 44144296 - 44144510
Alignment:
| Q |
277 |
atcaaaatcaacagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatccactctcaacctaacatgtgttatt |
376 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44144296 |
atcaaaatcaacagcacagaccaaacttgtatatgtaaatattcttactatggtgattgtgcaatgctttccatacactctcaacctaacatgtgttatt |
44144395 |
T |
|
| Q |
377 |
cacacacaaacaacaataatatgagctaaaaaattaagcactgacacaattgagggaagggaatttgtgtttaaattgatgatcatagtcgcttgaattg |
476 |
Q |
| |
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||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
44144396 |
cacacacaaacaacaataatatgagctcaaaaatcaagcactgacacaattgagggaagggaatttgtgattaaattgatgatcatagttacttgaattg |
44144495 |
T |
|
| Q |
477 |
gccggaaccttcttc |
491 |
Q |
| |
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||||||||||||||| |
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| T |
44144496 |
gccggaaccttcttc |
44144510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 488 - 574
Target Start/End: Original strand, 44144533 - 44144622
Alignment:
| Q |
488 |
cttctaagattgtatttatgttgataaccatgct---agtatatggtttctgttgactcatcctacaatgaaatgaaaatggtacaaaca |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44144533 |
cttctaagattgtatttatgttgataaccatgctgctagtatatggtttctgttgactcatcctacaatgaaatgaaaatggtagaaaca |
44144622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 568 - 618
Target Start/End: Original strand, 44144656 - 44144706
Alignment:
| Q |
568 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacctcttcaaaaa |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44144656 |
acaaacacctaaatacaagagtaaggtggtggtagtgtacaccttcaaaaa |
44144706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 695 - 727
Target Start/End: Original strand, 40893227 - 40893259
Alignment:
| Q |
695 |
catatgcactctggcataataacacctttgctt |
727 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
40893227 |
catatgcactctggcataataacacctttgctt |
40893259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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