View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12030_low_10 (Length: 324)
Name: NF12030_low_10
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12030_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 40052906 - 40053211
Alignment:
| Q |
18 |
ctcagctactatatatgtagcatctatcgaacaatgtgaggtgcattttcgtcatgctggtatggtctatttagtatgggcgcaaacagaagatttcgga |
117 |
Q |
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| T |
40052906 |
ctcagctactatatatgtagc-tctatcgaacaatgtgaggtgcattttcgtcatgctggtatggtctatttggtatgggcgcaaacagaagatttcgga |
40053004 |
T |
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| Q |
118 |
gggtgtttaagaaaattcattttccattatagcttgtggtacaaatagtcttgaagaatgtaacacnnnnnnnnnncccaaaagaagaatgtaacacttg |
217 |
Q |
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| T |
40053005 |
gggtgtttaagaaaattcattttccattatagcttgtggtacaaatagtcttgaagaatgtaacactttttttttacccaaaagaagaatgtaacacttg |
40053104 |
T |
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| Q |
218 |
aaaaatggagaatgaattcatctcaaatgcttgagatattagacctcctgtttggaattaaatgtgagtaattatgttttacatcggctaaaaatggagg |
317 |
Q |
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| T |
40053105 |
aaaaatggagtatgaattcatctcaaatgcttgagatattagacctcctgttaggaattaaatgtgagtaattatgttttacatcggctaaaaatggaga |
40053204 |
T |
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| Q |
318 |
aaatgtt |
324 |
Q |
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||||||| |
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| T |
40053205 |
aaatgtt |
40053211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 40053445 - 40053503
Alignment:
| Q |
266 |
tgtttggaattaaatgtgagtaattatgttttacatcggctaaaaatggaggaaatgtt |
324 |
Q |
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| T |
40053445 |
tgttgggaatcaagtgtgaataattatgtcccacatcggctaaaaatggaggaaatgtt |
40053503 |
T |
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