View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12030_low_13 (Length: 292)

Name: NF12030_low_13
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12030_low_13
NF12030_low_13
[»] chr8 (3 HSPs)
chr8 (1-274)||(38444996-38445269)
chr8 (48-160)||(6908295-6908409)
chr8 (55-103)||(14804173-14804221)
[»] chr6 (3 HSPs)
chr6 (56-126)||(12268933-12269003)
chr6 (51-153)||(20864365-20864468)
chr6 (62-145)||(9496415-9496499)
[»] chr7 (3 HSPs)
chr7 (36-73)||(42441008-42441045)
chr7 (37-161)||(30531663-30531789)
chr7 (63-161)||(44056595-44056693)
[»] chr3 (1 HSPs)
chr3 (57-125)||(49637330-49637398)
[»] scaffold0018 (1 HSPs)
scaffold0018 (40-122)||(28137-28220)
[»] chr4 (1 HSPs)
chr4 (105-160)||(28496655-28496711)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 38445269 - 38444996
Alignment:
Q  1 tcactctttataaactttagtcaaaccttataacatttaatctatatgggacttggtttttccaatacacccctcacgcccaatactattgagattggag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38445269 tcactctttataaactttagtcaaaccttataacatttaatctatatgggacttggtttttccaatacacccctcacgcccaatactattgagattggag 38445170  T
Q  101 cgttaatataaatggtaggtggcccagacgatagactctgataccatattagatttttataatcccctcgtggatataggccatgtttggattgaccaat 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38445169 cgttaatataaatggtaggtggcccaaacgatagactctgataccatattagatttttataatcccctcgtggatataggccatgtttggattgaccaat 38445070  T
Q  201 tgaacatatctatctattgacacaaacacttgagagattgtttaagacagctgatcgaaacaactgtgacatat 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  38445069 tgaacatatctatctattgacacaaacacttgagagattgtttaagagagctgatcgaaacaactatgacatat 38444996  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 6908409 - 6908295
Alignment:
Q  48 gggacttggtttttccaatacacccc-tcacgcccaatactattgagattggagcgttaatataaatggtaggtggcccaga-cgatagactctgatacc 145  Q
    ||||||||||||||||| |||||||| |||||||||| ||| ||| ||| || | ||  |||||||| || ||| ||||| | | |||||||||||||||    
T  6908409 gggacttggtttttccagtacaccccctcacgcccaacactcttgggatgggtgagtggatataaatagtgggtagcccaaatcaatagactctgatacc 6908310  T
Q  146 atattagatttttat 160  Q
    |||||||||||||||    
T  6908309 atattagatttttat 6908295  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 14804173 - 14804221
Alignment:
Q  55 ggtttttccaatacacccctcacgcccaatactattgagattggagcgt 103  Q
    ||||||||||||||||||||||| || || ||||||||| |||| ||||    
T  14804173 ggtttttccaatacacccctcacacctaacactattgagcttggtgcgt 14804221  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 12269003 - 12268933
Alignment:
Q  56 gtttttccaatacacccctcacgcccaatactattgagattggagcgttaatataaatggtaggtggccca 126  Q
    ||||||||||||||||||||| |||||| ||||||| | |||| ||||  |||||||||||||||| ||||    
T  12269003 gtttttccaatacacccctcatgcccaacactattgggtttggtgcgtgtatataaatggtaggtgaccca 12268933  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 153
Target Start/End: Complemental strand, 20864468 - 20864365
Alignment:
Q  51 acttggtttttccaatacacccctcacgcccaatactattgagattggagcgttaatataaatggtaggtgg-cccagacgatagactctgataccatat 149  Q
    |||| |||||| ||||||||| |||| | |||| ||||||||| |||| |||| |||||||||||| ||||| || || | |||| || |||||||||||    
T  20864468 actttgttttttcaatacaccactcatgtccaacactattgagcttggtgcgtgaatataaatggtgggtggtccgagtcaataggctttgataccatat 20864369  T
Q  150 taga 153  Q
    ||||    
T  20864368 taga 20864365  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 145
Target Start/End: Complemental strand, 9496499 - 9496415
Alignment:
Q  62 ccaatacacccc-tcacgcccaatactattgagattggagcgttaatataaatggtaggtggcccagacgatagactctgatacc 145  Q
    |||||||||||| |||||||||| ||||||  | |||| ||||  ||||||||||| ||||||||   |||||||||||||||||    
T  9496499 ccaatacaccccctcacgcccaacactattaggcttggtgcgtatatataaatggtgggtggcccgatcgatagactctgatacc 9496415  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 42441045 - 42441008
Alignment:
Q  36 tttaatctatatgggacttggtttttccaatacacccc 73  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  42441045 tttaatctacatgggacttggtttttccaatacacccc 42441008  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 161
Target Start/End: Original strand, 30531663 - 30531789
Alignment:
Q  37 ttaatctatatgggacttggtttttccaatacaccc-ctcacgcccaatactattgagattggagcgttaatataaatggtaggtggccc-agacgatag 134  Q
    ||||||||| |||||||||| ||||||||||||||| |||| |||||  ||||||| | ||||   ||| ||||||| | | |||||||| |  || |||    
T  30531663 ttaatctatgtgggacttggcttttccaatacaccctctcatgcccagcactattgggcttggtaagtttatataaacgatgggtggcccgaatcggtag 30531762  T
Q  135 actctgataccatattagatttttata 161  Q
     ||||||| ||||||||| ||||||||    
T  30531763 gctctgatgccatattaggtttttata 30531789  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 161
Target Start/End: Complemental strand, 44056693 - 44056595
Alignment:
Q  63 caatacacccctcacgcccaatactattgagattggagcgttaatataaatggtaggtggcccagacgatagactctgataccatattagatttttata 161  Q
    |||||||||| |||||||||| ||||||| |||||  ||||  ||||||||||| |||||||     ||||| |||| | |||||||||| ||||||||    
T  44056693 caatacacccttcacgcccaacactattgggattgatgcgtggatataaatggtgggtggcctgatagataggctctaacaccatattaggtttttata 44056595  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 125
Target Start/End: Complemental strand, 49637398 - 49637330
Alignment:
Q  57 tttttccaatacacccctcacgcccaatactattgagattggagcgttaatataaatggtaggtggccc 125  Q
    ||||| ||||||||||||||||||||| ||||||| | |||| ||||  |||||| |||| ||||||||    
T  49637398 ttttttcaatacacccctcacgcccaacactattgggcttggtgcgtgtatataagtggtgggtggccc 49637330  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 122
Target Start/End: Original strand, 28137 - 28220
Alignment:
Q  40 atctatatgggacttggtttttccaataca-cccctcacgcccaatactattgagattggagcgttaatataaatggtaggtgg 122  Q
    |||||| | ||||||||||||||||||||| ||||||| |||||| ||||||  | |||| ||||  |||| ||||||||||||    
T  28137 atctatgttggacttggtttttccaatacaccccctcatgcccaacactatttggtttggtgcgtgtatatcaatggtaggtgg 28220  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 28496655 - 28496711
Alignment:
Q  105 aatataaatggtaggtggcccag-acgatagactctgataccatattagatttttat 160  Q
    |||||||||||| |||||||||| ||||||| ||||||||| ||||| | |||||||    
T  28496655 aatataaatggtgggtggcccagaacgataggctctgatacaatattcggtttttat 28496711  T

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