View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12030_low_15 (Length: 280)

Name: NF12030_low_15
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12030_low_15
NF12030_low_15
[»] chr8 (3 HSPs)
chr8 (1-272)||(38445265-38445537)
chr8 (16-58)||(14020358-14020400)
chr8 (1-65)||(25925891-25925955)
[»] chr4 (4 HSPs)
chr4 (1-65)||(28496491-28496555)
chr4 (16-59)||(23311462-23311505)
chr4 (16-65)||(32973144-32973193)
chr4 (16-48)||(53738211-53738243)
[»] chr6 (1 HSPs)
chr6 (16-65)||(18286667-18286716)
[»] chr1 (1 HSPs)
chr1 (16-65)||(31789418-31789467)
[»] chr2 (4 HSPs)
chr2 (9-65)||(33145652-33145708)
chr2 (16-63)||(36901211-36901258)
chr2 (16-63)||(36901445-36901492)
chr2 (9-65)||(21374296-21374352)
[»] chr7 (4 HSPs)
chr7 (1-60)||(7126898-7126957)
chr7 (27-65)||(30531573-30531611)
chr7 (16-65)||(41489960-41490009)
chr7 (29-65)||(43295521-43295557)
[»] chr5 (2 HSPs)
chr5 (16-59)||(4796427-4796470)
chr5 (12-65)||(2721814-2721867)


Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 38445265 - 38445537
Alignment:
Q  1 agtgacacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaacaggaataagagcaaatcat-gattttaccatatt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38445265 agtgacacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaacaggaataagagcaaatcattgattttaccatatt 38445364  T
Q  100 attgattattgatagtcaagaaaaaggaattatcaattttatgcagttattataagcagaacttcattagcaattagcatatttgttattttagagaatg 199  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38445365 attgattattgacagtcaagaaaaaggaattatcaattttatgcagttattataagcagaacttcattagcaattagcatatttgttattttagagaatg 38445464  T
Q  200 ctttagcagacagatcaactatggtaaacagcgagaatctcatattattgtgttatttagcattgtctctgct 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38445465 ctttagcagacagatcaactatggtaaacagcgagaatctcatattattgtgttatttagcattgtgtctgct 38445537  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 14020400 - 14020358
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggcacaatataaa 58  Q
    ||||||||| |||||||||||| |||||||||| |||||||||    
T  14020400 cttacaagctagttttgtaaggttgacttaggcccaatataaa 14020358  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 25925891 - 25925955
Alignment:
Q  1 agtgacacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    |||| ||||| ||||||||||| |  ||||||||| ||||| |||||| |||||||| |||||||    
T  25925891 agtggcacccctcatcttacaacctggttttgtaaagatgagttaggcccaatataataacctaa 25925955  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 28496555 - 28496491
Alignment:
Q  1 agtgacacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    |||| ||||| ||| |||||||||  ||||||||||||||| |||||| ||||||||||||||||    
T  28496555 agtggcacccctcaccttacaagccggttttgtaaggatgagttaggctcaatataaaaacctaa 28496491  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 23311505 - 23311462
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggcacaatataaaa 59  Q
    |||||||||  |||||||||||||||||||||| ||||||||||    
T  23311505 cttacaagccggttttgtaaggatgacttaggcccaatataaaa 23311462  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 32973144 - 32973193
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    ||||||||| |||||||||||||||| |||| |  |||||||||||||||    
T  32973144 cttacaagccagttttgtaaggatgagttagaccaaatataaaaacctaa 32973193  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 53738243 - 53738211
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggc 48  Q
    ||||||||| |||||||||||||||||||||||    
T  53738243 cttacaagccagttttgtaaggatgacttaggc 53738211  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 18286667 - 18286716
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    ||||||||| | |||||||||||||| |||||| ||||||||||||||||    
T  18286667 cttacaagccaattttgtaaggatgagttaggcccaatataaaaacctaa 18286716  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 31789418 - 31789467
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    |||||||||  ||||||||||||||| |||||| ||||||||||||||||    
T  31789418 cttacaagccggttttgtaaggatgaattaggcccaatataaaaacctaa 31789467  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 65
Target Start/End: Complemental strand, 33145708 - 33145652
Alignment:
Q  9 ccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    |||||| |||||||||  |||||||||| |||| |||||| ||||||||||||||||    
T  33145708 ccttcaccttacaagccggttttgtaagaatgagttaggctcaatataaaaacctaa 33145652  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 36901211 - 36901258
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacct 63  Q
    ||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  36901211 cttacaagccatttttgtaaggatgagttaggcccaatataaaaacct 36901258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 36901445 - 36901492
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacct 63  Q
    ||||||||| | |||||||||||||| |||||| ||||||||||||||    
T  36901445 cttacaagccatttttgtaaggatgagttaggcccaatataaaaacct 36901492  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 21374296 - 21374352
Alignment:
Q  9 ccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    |||||| |||||||||  ||||||||||||||| ||| || ||||||| ||||||||    
T  21374296 ccttcaccttacaagctggttttgtaaggatgaattatgcccaatatacaaacctaa 21374352  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7126898 - 7126957
Alignment:
Q  1 agtgacacccttcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaa 60  Q
    |||||||||| |||||||| ||||  ||||||||||||||  |||||| |||||||||||    
T  7126898 agtgacacccctcatcttataagcccgttttgtaaggatgtgttaggcccaatataaaaa 7126957  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 30531611 - 30531573
Alignment:
Q  27 gttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    |||||||||||||||||||| | ||||||||||||||||    
T  30531611 gttttgtaaggatgacttagacccaatataaaaacctaa 30531573  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 41489960 - 41490009
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    |||||||||  |||||||||||||||  ||||| ||||||||||||||||    
T  41489960 cttacaagccggttttgtaaggatgagctaggcccaatataaaaacctaa 41490009  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 43295521 - 43295557
Alignment:
Q  29 tttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  43295521 tttgtaaggatgagttaggcccaatataaaaacctaa 43295557  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 4796427 - 4796470
Alignment:
Q  16 cttacaagcgagttttgtaaggatgacttaggcacaatataaaa 59  Q
    |||||||||| ||||||||||||||| |||||| ||||||||||    
T  4796427 cttacaagcgggttttgtaaggatgagttaggcccaatataaaa 4796470  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 2721814 - 2721867
Alignment:
Q  12 tcatcttacaagcgagttttgtaaggatgacttaggcacaatataaaaacctaa 65  Q
    |||||||||||||  ||||||||||||||| ||||||  ||||| |||||||||    
T  2721814 tcatcttacaagcttgttttgtaaggatgagttaggcctaatatcaaaacctaa 2721867  T

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