View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12030_low_2 (Length: 735)
Name: NF12030_low_2
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12030_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 416 - 727
Target Start/End: Original strand, 24689506 - 24689821
Alignment:
| Q |
416 |
cttagtttgatgttggcccataacttctgaaatatctctctc--acacaatatgtagactactattatacacaaaaatgcatgttctgttctgtcacaat |
513 |
Q |
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| T |
24689506 |
cttagtttgaagttggcccataacttctgaaatatctctctctcacacaatatgtagactactattatacacaaaa-tgcatgttctgttctgttacaat |
24689604 |
T |
|
| Q |
514 |
tactccttcctgcaattttcaacttctgcaattcacttttgaagtttaattatagttccnnnnnnnnnnatt---gacaatgtgaagggcattacctgag |
610 |
Q |
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| T |
24689605 |
tactcctgcctgcaattttcagcttctgcaattcacttttgaagtttatttatagttccttttttttttttttttgacaatgtgaagggcattacctgag |
24689704 |
T |
|
| Q |
611 |
tgcatcagcgctaatgtgggccagcacaaagaacgatagcctgaaggagaaaatgtcggctcttgttgccggtctatccgcttgtcaagaaaaaattgga |
710 |
Q |
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| T |
24689705 |
tgcatcagcgctaatgtgggccagcacaaagaacgatagcctgaaggagaaaatgtcggctcttgttgccggtctatccgcctgtcaagaaaaaattgga |
24689804 |
T |
|
| Q |
711 |
acaggatatctctctgc |
727 |
Q |
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||||||||||||||||| |
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| T |
24689805 |
acaggatatctctctgc |
24689821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 25 - 387
Target Start/End: Original strand, 24728644 - 24729017
Alignment:
| Q |
25 |
ttgtggccacgtcactatctttaacattgcaaagaatcgcactaaaatacaggcctcaatcgttgttgtattgtattttctgaaaaatcaaaaactgtta |
124 |
Q |
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| T |
24728644 |
ttgtggccacgtcgtgatctttgacattgcaaagaatcgcagtaaaacacaggcctcaatcgttgttttgttgtattttccgaaaaatcaaaaactgtta |
24728743 |
T |
|
| Q |
125 |
tgtcgaagcccaaatcatggttgcgaaccttttattgacaacgctatttgc----------ataaggctgtctttcatgtaaagctttttccacttttat |
214 |
Q |
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| T |
24728744 |
tgttgaagcccaaatcatggttgcgaaccttttatttacaaccctattaacctttattcccataagtctgtctttcatgtaaagctttttccacttttac |
24728843 |
T |
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| Q |
215 |
gtgtactaattagccacagcttttagaagattaaaaagttgatttgaataaaaattgcagctatatataagaatatttcatttttca--ctttgctactt |
312 |
Q |
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||||| ||||||| || || ||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||| | |||||||| | |
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| T |
24728844 |
gtgtagtaattagtcagagatttgagaagattaaaaagtagaattgaataaaaattgcatctatatataagaatattccattttttatgttttgctacct |
24728943 |
T |
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| Q |
313 |
atcccctcctccaaacaggaaaccaatgttctcaagcttttggaaagctagtcttttagacttttcatgtataat |
387 |
Q |
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| T |
24728944 |
accccctcccccaaacagg-aaccaaagttctcaagcttttggaaagctagccttttagacttttcatgtataat |
24729017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 447 - 734
Target Start/End: Original strand, 24729112 - 24729408
Alignment:
| Q |
447 |
atatctctctcacacaatatgtagactactattatacacaaaaatgcatgttctgttctgtc-----acaattactccttcctgcaattttcaacttctg |
541 |
Q |
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| T |
24729112 |
atatctctctcacacattgtgtagact-ctattatacacaaaaatgcatgttctgttctgttctgttacaattacttctgcctgcaattttcaacttcag |
24729210 |
T |
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| Q |
542 |
caattcacttttgaagtttaa--ttatagttccnnnnnnnnnnattgac---aatgtgaagggcattacctgagtgcatcagcgctaatgtgggccagca |
636 |
Q |
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| T |
24729211 |
caattcacttttgaagttttaacttataattccttttttttttttttttttaaatgtgaagggcattacttgagtgcatcagctctaatgtgggccagca |
24729310 |
T |
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| Q |
637 |
caaagaacgatagcctgaaggagaaaatgtcggctcttgttgccggtctatccgcttgtcaagaaaaaattggaacaggatatctctctgcttctcca |
734 |
Q |
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||||||| |||| |||||| ||||||||||||||||||||| ||||| | ||||| ||||| |||||||||||||| |||||||| ||||||| |||| |
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| T |
24729311 |
caaagaatgataacctgaacgagaaaatgtcggctcttgtttccggtttgtccgcctgtcaggaaaaaattggaacgggatatctgtctgcttttcca |
24729408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 241 - 386
Target Start/End: Original strand, 24689285 - 24689429
Alignment:
| Q |
241 |
aagattaaaaagttgatttgaataaaaattgcagctatatataagaatatttcatttttcactttgctacttatcccctcctccaaacaggaaaccaatg |
340 |
Q |
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| T |
24689285 |
aagattaaaaagttgatttgaataaaaattggagctatatataagaatattccattttccattttgctacctatcccctcccccatacagg-aaccagtg |
24689383 |
T |
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| Q |
341 |
ttctcaagcttttggaaagctagtcttttagacttttcatgtataa |
386 |
Q |
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| T |
24689384 |
ttctcaagcttttggaaagctagccttttagacttttcatgtataa |
24689429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 587 - 727
Target Start/End: Original strand, 24720588 - 24720728
Alignment:
| Q |
587 |
acaatgtgaagggcattacctgagtgcatcagcgctaatgtgggccagcacaaagaacgatagcctgaaggagaaaatgtcggctcttgttgccggtcta |
686 |
Q |
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||||||||||||||||||| | |||||| |||| | |||||||||||||||||| ||| ||| | ||||||| |||||||||||||||||| ||||||| |
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| T |
24720588 |
acaatgtgaagggcattacttaagtgcaacagctcaaatgtgggccagcacaaacaacaatatcgtgaaggataaaatgtcggctcttgtttccggtctg |
24720687 |
T |
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| Q |
687 |
tccgcttgtcaagaaaaaattggaacaggatatctctctgc |
727 |
Q |
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| T |
24720688 |
tccgcctgtcaggaaaaaattggaacgggatatctgtctgc |
24720728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 584 - 719
Target Start/End: Original strand, 24746825 - 24746960
Alignment:
| Q |
584 |
ttgacaatgtgaagggcattacctgagtgcatcagcgctaatgtgggccagcacaaagaacgatagcctgaaggagaaaatgtcggctcttgttgccggt |
683 |
Q |
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|||| |||||||| || ||||| ||||||||||||| | ||||| |||||||||||||| | |||||||||| ||||||||| |||||||||||||||| |
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| T |
24746825 |
ttgaaaatgtgaaaggaattacttgagtgcatcagctcaaatgtaggccagcacaaagatcaatagcctgaacaagaaaatgttggctcttgttgccggt |
24746924 |
T |
|
| Q |
684 |
ctatccgcttgtcaagaaaaaattggaacaggatat |
719 |
Q |
| |
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| || || ||||| |||||||||||||| |||||| |
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| T |
24746925 |
ttgtctgcctgtcaggaaaaaattggaacgggatat |
24746960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 24720279 - 24720329
Alignment:
| Q |
234 |
cttttagaagattaaaaagttgatttgaataaaaattgcagctatatataa |
284 |
Q |
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|||||||||||| ||||| ||| |||| ||||||||||||||||||||||| |
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| T |
24720279 |
cttttagaagataaaaaacttggtttggataaaaattgcagctatatataa |
24720329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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