View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12030_low_4 (Length: 483)
Name: NF12030_low_4
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12030_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 10 - 465
Target Start/End: Complemental strand, 31981439 - 31980986
Alignment:
| Q |
10 |
agatgaagtagaggaccatggatgcagaagtgaggggaccaaaactttgattagagtttccccaccttcaaaggaaagaaaccaaaaaatttagtcacac |
109 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31981439 |
agatgaagtagaggaccatggattcagaagtgaggggaccaaaactttgattagagtttccccaccttcaaaggaaagaaaccaaaaaatttagtcacac |
31981340 |
T |
|
| Q |
110 |
gtacgtactata--ctcaagtactcacttgttaaaattaaccaaatcaagaaacaatcatcgtggatgaatgaagtagcagatcaatttatgatgatgag |
207 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31981339 |
gtacgtactatatactcaagtactcacttgttaaaattaaccaaatcaagaaacaatcatcgtggatgaatgaagtagcagatcaatttatgatgatgag |
31981240 |
T |
|
| Q |
208 |
acaaatcattaactgccatccacgttacatgcatttttatcatttcaatttacnnnnnnnnnntaatccaaattgtaacaccttgctagaccattataat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
31981239 |
acaaatcattaactgccatccacgttacatgcatttttatcatttcaatttacaaaaaaa----aatccaaattgtaacaccttgctagaccattagaat |
31981144 |
T |
|
| Q |
308 |
catagttctaaaatgtggtctgaaattgcagtcgtaatataacaattctagcgatctctgcaacggtatcacaattgggatggtggtcgcattgaccatt |
407 |
Q |
| |
|
|||||||||||| |||||| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31981143 |
catagttctaaattgtggtttgtaattgcagtcgtaatataacaattttagcaatctctgcaacggtatcacaattgggatggtggtcgcattgaccatt |
31981044 |
T |
|
| Q |
408 |
tttgcttacattttattgcagtgcaaccgcaactgcaatttaaaaccatgactagaat |
465 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31981043 |
tttgcttacattttattgcagtgcaaccgcaactgcaatttaaaaccatgactagaat |
31980986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University