View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12030_low_5 (Length: 440)
Name: NF12030_low_5
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12030_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 207 - 424
Target Start/End: Original strand, 1132944 - 1133162
Alignment:
| Q |
207 |
gaagtaacaaaacactccacctctttcacaaggacccactaagattgtgggcaataatactattactagcttaggaccacttcatgaaaagtaaatatag |
306 |
Q |
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| T |
1132944 |
gaagtaacaaaacactccacctctttcacaaggacccactaagattgtgggcaataatactattactagcttaggaccacttcatgaaaagtaaatatag |
1133043 |
T |
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| Q |
307 |
agtgatacatatttgttaagagtctattggctaagtacctaataaatgcaatgcatgggggataattttcttatagaaggccaaaggaatgacccatatt |
406 |
Q |
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| T |
1133044 |
agtgatacatatttgttaagagtctattggctaactacctaatagatgcaatgcatgggagataattttcttatagaaggccaaaggaatgacccatgtt |
1133143 |
T |
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| Q |
407 |
-ctctattatattcctttt |
424 |
Q |
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|||||||||||||||||| |
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| T |
1133144 |
gctctattatattcctttt |
1133162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 1132743 - 1132871
Alignment:
| Q |
6 |
tcaattttgcctaatcaatttttcatatgtagcatgatttgttaccttctttaaggatattcctttcatttacacgtctttattttttaaaaaagaaaca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1132743 |
tcaattttgcctaatcaatttttcatatgtagcatgatttgttaccttctttaaggatattcctttcatttacacgtctttattttttaaaaaagaaaca |
1132842 |
T |
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| Q |
106 |
attcattaggttgtttttgctttccaagc |
134 |
Q |
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| T |
1132843 |
attcattaggttgtttttgctttccaagc |
1132871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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