View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12030_low_6 (Length: 433)
Name: NF12030_low_6
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12030_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 64 - 415
Target Start/End: Original strand, 20777064 - 20777416
Alignment:
| Q |
64 |
gatggtttgtattttaataattatccatcttcattatttaattcatatttatttccattcactttgatgcatagaatatgtctcatcaaattgcctaagt |
163 |
Q |
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| T |
20777064 |
gatggtttgtattttaagaattatccatcttcattatttaattcatatttatttccattcactttgatgcatagaatatgtctcatctaattgcctaagt |
20777163 |
T |
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| Q |
164 |
ccaaaaacaataaaaatgttgatatatacaagtctatttcatgcactacttaatgtatgctttgttcaaatattataagaaaattgttattaaaaatata |
263 |
Q |
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| T |
20777164 |
ccaaaaacaatatatatgttgatatatacaagtctattccatgcactacttaatgtatgctttgttcaaatattataagaaaattgttattaagaatata |
20777263 |
T |
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| Q |
264 |
tatttaacaaaagaccctacaaaaatgaatttaccaatctcaagttggatatcatcctaacacatctcaattgttcctttagttattaattactttaaaa |
363 |
Q |
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| T |
20777264 |
tatttaacaaaagaccctacaaaaatgaatttagcaatctcaagttggatatcatcctaaaacatctcaattgttcctttagttataaattactccaaaa |
20777363 |
T |
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| Q |
364 |
gatacattttggatgtttatgttgtg-ttttttgaaaaagttacttacaagtt |
415 |
Q |
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| T |
20777364 |
gatacattttggatgtttatgttgtgtttttttgaaaaagttacttacaagtt |
20777416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 20776996 - 20777042
Alignment:
| Q |
1 |
ttggatgtcattaaaattgcaattcaattctttatattatctatcta |
47 |
Q |
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| T |
20776996 |
ttggatgtcattaaaattgcaattcaattctttatattatctatcta |
20777042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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