View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12030_low_7 (Length: 433)
Name: NF12030_low_7
Description: NF12030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12030_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 3 - 417
Target Start/End: Original strand, 32354782 - 32355199
Alignment:
| Q |
3 |
atggaagacgattcaagatacccatcaaaagggtatcctttacgacgcaagaaccctaatcttcgtcaaaaacacccaattcgtaacttacaatatcaac |
102 |
Q |
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| T |
32354782 |
atggaagacgattcaagatacccgtcaaaagggtatcctttacgacgcaagaaccctaatcttcgtcaaaaacacccaattcgtaacttacaatatcaac |
32354881 |
T |
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| Q |
103 |
gctacaacgatcgcgaagaagatttcgaagacgatgaacccgaagaattcgatgattataatgtagatgaagacggaattggaaatgggtatgttgggaa |
202 |
Q |
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| T |
32354882 |
gctacaacgatcgcgaagaagatttcgaagacgatgaacccgaagaattcgatgattataacgtagatgaagacggaattggaaatgggtatgttgggaa |
32354981 |
T |
|
| Q |
203 |
ttttgaacaaaatgatgggtttgttagaaaaaagagaaaaatgcgaagcggccctagtggcggttttggtggtggttctgtgtcgaattatgaattgtta |
302 |
Q |
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| T |
32354982 |
ttttgaacaaaatgatgggtttgttagaaaaaagagaaaaatgcgaagcggccctagtggcggttttggtggtggttctgtgtcgaattatgaattgtta |
32355081 |
T |
|
| Q |
303 |
ccatggggcagtggtaaattttcgaactttaatcgtggtggtagttcgagttctgtccattcc---gggtcggaggaatggacagaacacgcgacgtttg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32355082 |
ccatggggcagtggtaaattttcgaactttaatcgtggtggtagttcgagttctgtccattcctctgggtcggaggaatggacagaacacgcgacgtttg |
32355181 |
T |
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| Q |
400 |
tgttgttagagatatggg |
417 |
Q |
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|||||||||||||||||| |
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| T |
32355182 |
tgttgttagagatatggg |
32355199 |
T |
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