View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12031_high_5 (Length: 361)
Name: NF12031_high_5
Description: NF12031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12031_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 41286001 - 41285776
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
41286001 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggcacctctcctagt |
41285902 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
|||| |||||||| ||||||||||||||| ||||| ||||||| | |||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
41285901 |
tttaagtgcatcagaggtccatatttctcttccaaaattttgaagcaatgatggggcagtgagctactaataatatgatgtatatttcctatgaggggca |
41285802 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaattg |
237 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
41285801 |
gtgtccatggtccaggtggtaaattg |
41285776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 345
Target Start/End: Complemental strand, 41324002 - 41323672
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
|||||||||||||||||||| ||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
41324002 |
aagaaggtttggcctatcactaaaggtaaggtcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtatggtacctctcctagt |
41323903 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
|| |||||||| || ||||||||||| || |||||| ||||||| ||||||||||||| ||| |||| ||||| ||||||| |||||||||||||| | |
|
|
| T |
41323902 |
ttaaggtgcattaaaggtccatatttatcagccaaaattttgaagcggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggta |
41323803 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggaggccattat |
311 |
Q |
| |
|
|| ||||||||| ||||| || ||| ||||||| || ||||||||||||||||||||| |||||||| |||||| |||||||||| | || |
|
|
| T |
41323802 |
gttcccatggtccaggtggcaatttggtagtggaattgttaaaactccatcttttaactattttgaatagcactaagaggatgagaaaggag---agcat |
41323706 |
T |
|
| Q |
312 |
gaaggtaaaattagaaaaagggttgtgaaactcc |
345 |
Q |
| |
|
|||| | | |||||||||||||||||||| |||| |
|
|
| T |
41323705 |
gaagatgatattagaaaaagggttgtgaagctcc |
41323672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 41331913 - 41331622
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||| |||||| ||||||||||||||||||||||||| || |||||||| |||||| |
|
|
| T |
41331913 |
aagaaggtttggcctatcacaaaatgtaaggtcatgtgttttcataacctcttttgccatttctggtgaactaactattacatatggtacctctcctagt |
41331814 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
|| ||||||||||| ||||||||||| |||||||| |||||||| |||||||||||| ||| |||| ||||| ||||||| |||||||||||||| | |
|
|
| T |
41331813 |
ttaaggtgcatcaaaggtccatatttttctgccaactttttgaagaggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggta |
41331714 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggag |
303 |
Q |
| |
|
|| |||||||||||||||| || ||| ||||||| || ||||||||||| ||||||||| ||||| || |||||| |||||||||| |
|
|
| T |
41331713 |
gtttccatggtcctggtggcaatttggtagtggaattgttaaaactccatctttgaactattttgaatagaactaagaggatgagaaaggag |
41331622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 41366093 - 41365802
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
|||||| |||||||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41366093 |
aagaagttttggcctatcacagaagttgatatcatgtgttttcataatctctttggcaatttctggtgaactaactattatgtaaggtacctcacctaac |
41365994 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||| |||| | | ||||| |||||||| |||||||||||||||| |
|
|
| T |
41365993 |
tttaggtgcattaagggtccatattcctctgccaattttttgaggtggtgatggggcaatgaactcgttataatctgatgtatgtttcctatgaggggca |
41365894 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggag |
303 |
Q |
| |
|
|||||||||||| |||||||||||| | |||| || || ||| || ||||||| | ||| |||||||| ||||||||||||||||| |
|
|
| T |
41365893 |
ttgtccatggtccaggtggtaaattgacaatggagttgttagcgctcaatgttttaacaactttgaatagcactaagaggaagagaaaggag |
41365802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 41369501 - 41369207
Alignment:
| Q |
10 |
agaagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcaccta |
109 |
Q |
| |
|
|||||||||||||| |||| |||||| |||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| | | || ||| |||| |
|
|
| T |
41369501 |
agaagaaggtttggtctattacaaaaggtgagatcatgtgtttttagaatctctttggccatttctggtgaactaactattatgcatgatatctctccta |
41369402 |
T |
|
| Q |
110 |
gttttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgagggg |
209 |
Q |
| |
|
||||||| ||||| |||||||||||||||| ||||||||||||||| | |||||||||||||| | |||||||| ||||||||||||||| ||||||| |
|
|
| T |
41369401 |
gttttagatgcattaagggtccatatttctttgccaaatttttgaagcaatgatggggcagtgagctactaataatttgatgtatatttcctgtgagggg |
41369302 |
T |
|
| Q |
210 |
cagtgtccatggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggagg |
304 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||| ||| |||||||| || |||||||| | ||||| | ||| |||||||||||||| |
|
|
| T |
41369301 |
cagtgtccatggccctggtggtaaattgatggtggaatagttacacctccatctcttgactattttgagtagcaaaaagatgaagagaaaggagg |
41369207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 41336835 - 41336551
Alignment:
| Q |
19 |
tttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagttttaggt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||| |||||||| |||| |
|
|
| T |
41336835 |
tttggcctatcacaaaatgtgatgtcatgtgttttcataatctcttttgccatttctggtgaactaactactacatatggtacctctcctagtttaaggt |
41336736 |
T |
|
| Q |
119 |
gcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggcagtgtcca |
218 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||||| |||||||||| |||| ||| | |||| || ||||| |||||||||||||| ||| |||| |
|
|
| T |
41336735 |
gcatcaaaggtccatatttttctgccaattttttgaagaggtgatgggggggtgagctgccactaatctggtgtatgtttcctatgaggggtagtttcca |
41336636 |
T |
|
| Q |
219 |
tggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggag |
303 |
Q |
| |
|
|||||||||||| || ||| ||||||| || ||||||||||| ||||||||| |||||||| |||||| |||||||||| |
|
|
| T |
41336635 |
tggtcctggtggcaatttggtagtggaattgttaaaactccatctttgaactattttgaatagcactaagaggatgagaaaggag |
41336551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 31188958 - 31189249
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
|||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||| |||||| |
|
|
| T |
31188958 |
aagaaggtttggtctatcacaaaagttgaggtcatgtgttttcataatctctttggccattgatggtgaactaactattaggtatgatacctctcctagt |
31189057 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
||||||||||| |||||||||||| | || || ||||||||||| | ||||| |||| ||| ||||||||| ||||| || |||||||||| ||| | |
|
|
| T |
31189058 |
tttaggtgcattaagggtccatatgtatcagctaaatttttgaagcattgatgaggcaatgagttgctaataagttgatgcatgtttcctatgatgggta |
31189157 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggag |
303 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||| | ||||||| |||| |||||||||||| |
|
|
| T |
31189158 |
gtgtccatggtcctggtggtaaattgatactggaattgttacaactccattttttaactattttgagtagcacaaagagaaagagaaaggag |
31189249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 31185438 - 31185731
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||||| |||||| |
|
|
| T |
31185438 |
aagaaagtttggtctatcacaaaagttgaggtcatgtgttttcataatctctttggccattgatggtgaactaactattaggtatgatacctctcctagt |
31185537 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
||||||||||| |||||||||||||| || || ||||||||||| | ||||| |||| ||| | |||||||| |||||||| |||||||||| ||| | |
|
|
| T |
31185538 |
tttaggtgcattaagggtccatatttttcagctaaatttttgaagcactgatgaggcaatgagtttctaataatttgatgtatgtttcctatgatgggta |
31185637 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggaggc |
305 |
Q |
| |
|
|||||| ||||||| ||||||||||| | |||||| ||| |||||||||||||||||||| | |||||| ||| | |||||||||||| |
|
|
| T |
31185638 |
gtgtccgtggtccttgtggtaaattgatagtagaattattacacctccatcttttaactatttttagtagcactaagaaaatgagaaaggaggc |
31185731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 41321983 - 41321759
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
41321983 |
aagaaggtttggcctatcacaaaagttgagatcatgtgttttcataatctctttggcaatttctggtgaactaactattacgtatggtacctctcctagt |
41321884 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
|| |||||||| | ||||||||||| ||||||||| ||||||| | |||||||||| ||| |||| ||||| ||||||| |||||||||| ||| | |
|
|
| T |
41321883 |
ttaaggtgcattagaggtccatatttatctgccaaaattttgaagagatgatggggcaatgatctgctgataatctgatgtaagtttcctatgaagggta |
41321784 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaatt |
236 |
Q |
| |
|
|| |||||||||||||||| ||||| |
|
|
| T |
41321783 |
gtttccatggtcctggtggcaaatt |
41321759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 12 - 303
Target Start/End: Complemental strand, 41327900 - 41327609
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
||||||||||||||| || || || ||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
41327900 |
aagaaggtttggcctgtcgcagaagttgagatcatgtgttttcataatctctttggcaatttctggtgaactaactattacgtatggtacctctcctagt |
41327801 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
|| |||||||| | ||||||||||| ||||||||| ||||||| | |||||||||| ||| |||| ||||| ||||||| |||||||||||||| | |
|
|
| T |
41327800 |
ttaaggtgcattagaggtccatatttatctgccaaaattttgaagagatgatggggcaatgatctgctgataatctgatgtaagtttcctatgaggggta |
41327701 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggag |
303 |
Q |
| |
|
|| |||||||||||||||| || ||| | ||||| || ||||||||||| ||||||||| ||||| || |||||| |||||||||| |
|
|
| T |
41327700 |
gtttccatggtcctggtggcaatttggtagtcgaattgttaaaactccatctttgaactattttgaatagaactaagaggatgagaaaggag |
41327609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 303
Target Start/End: Original strand, 31178910 - 31179202
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
||||||||| || ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| | || || |||| | |
|
|
| T |
31178910 |
aagaaggttcggtctatcacaaaagttgaggtcatgtgttttcataatctctttggccattgatggtgaactaactattatgtatgacacttctcctaat |
31179009 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
||||||| ||| |||||||||||||| || ||||||||| |||| | ||||| | | ||| | ||||||| |||||||| |||||||||| ||| | |
|
|
| T |
31179010 |
tttaggtacattaagggtccatatttttcagccaaatttctgaagcactgatgaagtaatgagttactaataacttgatgtatgtttcctatgacgggta |
31179109 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaattgtctttggaattagtactactcca-tcttttaactattttcaatagcacatagaggaagagaaaggag |
303 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||| |||||| | ||||||||||||| | ||||||| |||| |||||||||||| |
|
|
| T |
31179110 |
gtgtccatggtcctggtggtaaattgatactggaattgttacaactccatttttttaactattttgagtagcacaaagagaaagagaaaggag |
31179202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 236
Target Start/End: Complemental strand, 41315933 - 41315709
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
|||||||||||||||| ||| ||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| || ||| | |||| | |
|
|
| T |
41315933 |
aagaaggtttggcctaccactaaagttgagatcatgtgttttcataatctctttggcaatttctggtgaactaactattacgtatggcacccctcctaat |
41315834 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
|| |||| |||||||||||||||||| ||||||||| ||| |||||||||||||||| ||| |||| ||||| ||||||| |||||||||| ||| | |
|
|
| T |
41315833 |
ttcaggtacatcaagggtccatatttatctgccaaaaatttaaaacggtgatggggcaatgatctgctgataatctgatgtaagtttcctatgaagggta |
41315734 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaatt |
236 |
Q |
| |
|
|| |||||||||||||||| ||||| |
|
|
| T |
41315733 |
gtttccatggtcctggtggcaaatt |
41315709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 12 - 305
Target Start/End: Complemental strand, 31224855 - 31224559
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
||||||||||| || |||||||| ||| ||| | ||||||||||||||||| ||||||| ||||||||||||||||| ||| | |||||| |||||| |
|
|
| T |
31224855 |
aagaaggtttgctctgtcacaaaagttgaggtcgtttgttttcataatctcttgggccattgatggtgaactaactattaggtatgatacctctcctagt |
31224756 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggc---agtgaaatgctaataatatgatgtatatttcctatgaggg |
208 |
Q |
| |
|
|||| |||||| |||||||||||||| || ||||||||||| || ||||| ||| | ||| |||||||||| ||||||| |||||||||| || |
|
|
| T |
31224755 |
tttaagtgcattaagggtccatatttttcagccaaattttttaagtactgatgaggcaatattgagttgctaataatttgatgtaagtttcctatgatgg |
31224656 |
T |
|
| Q |
209 |
gcagtgtccatggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggaggc |
305 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||| ||| ||||||| ||||||||| ||| | |||||| |||| |||||||||||||| |
|
|
| T |
31224655 |
gtagtgtccatggtcctggtggtaaattgatattggaattgttacaactccattttttaactaatttgagtagcaccaagagaaagagaaaggaggc |
31224559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 41359755 - 41359612
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacc---tcacct |
108 |
Q |
| |
|
||||||||||||||| |||| ||| || | ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
41359755 |
aagaaggtttggcctgtcaccaaaggtaaggtcatgtgttttcataatctctttggcaatttctggtggactaactattatgtaaggtacctgatcacct |
41359656 |
T |
|
| Q |
109 |
agttttaggtgcatcaagggtccatatttctctgccaaattttt |
152 |
Q |
| |
|
| ||||||||||| ||| ||||||||||||| ||||||||||| |
|
|
| T |
41359655 |
aactttaggtgcattaagagtccatatttctcagccaaattttt |
41359612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 17249646 - 17249942
Alignment:
| Q |
12 |
aagaaggtttggcctatcacaaaatgtgatgtcatgtgttttcataatctctttggccatttctggtgaactaactattatgtaaggtacctcacctagt |
111 |
Q |
| |
|
||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||| |
|
|
| T |
17249646 |
aagaaggttaggcctatcacaaaaggtaaggtcatgtgttttcataatctctttggccattgttggtgaactaactattaggtgtggtacctctcctagt |
17249745 |
T |
|
| Q |
112 |
tttaggtgcatcaagggtccatatttctctgccaaatttttgaaacggtgatggggcagtgaaatgctaataatatgatgtatatttcctatgaggggca |
211 |
Q |
| |
|
||||| |||| |||||||||||||| ||||||||| | ||||| ||||||||||| ||||| | ||||| |||||||| |||||||| | ||||| |
|
|
| T |
17249746 |
tttagcagcattaagggtccatatttatctgccaaaatcttgaaccggtgatggggaagtgaggaagtgataatttgatgtatgtttcctataaagggca |
17249845 |
T |
|
| Q |
212 |
gtgtccatggtcctggtggtaaattgtctttggaattagtactactccatcttttaactattttcaatagcacatagaggaagagaaaggaggccat |
308 |
Q |
| |
|
||||||||| | || ||| | || | | ||| ||| ||||||||||||||||||||| | |||||| | |||||||||||||||||||| |
|
|
| T |
17249846 |
aagtccatggtgcaggcggtgagttaatagtaggattgttacaactccatcttttaactatttttagtagcaccaaaaggaagagaaaggaggccat |
17249942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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