View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12031_high_8 (Length: 314)

Name: NF12031_high_8
Description: NF12031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12031_high_8
NF12031_high_8
[»] chr8 (31 HSPs)
chr8 (174-314)||(10284549-10284689)
chr8 (178-314)||(504043-504179)
chr8 (178-314)||(12831089-12831225)
chr8 (196-312)||(44507027-44507143)
chr8 (169-314)||(8841345-8841490)
chr8 (178-314)||(34012218-34012354)
chr8 (178-314)||(14547964-14548100)
chr8 (178-314)||(23122519-23122655)
chr8 (174-314)||(37038521-37038661)
chr8 (175-314)||(5957872-5958011)
chr8 (178-314)||(15197375-15197511)
chr8 (177-314)||(40423864-40424001)
chr8 (173-314)||(43414498-43414639)
chr8 (196-312)||(9122229-9122345)
chr8 (173-308)||(15048098-15048234)
chr8 (211-314)||(1179895-1179998)
chr8 (174-312)||(4854781-4854919)
chr8 (172-313)||(15258845-15258986)
chr8 (171-304)||(42354503-42354636)
chr8 (177-314)||(16056322-16056459)
chr8 (216-314)||(10621047-10621145)
chr8 (174-284)||(40467772-40467882)
chr8 (178-314)||(24307715-24307851)
chr8 (178-314)||(30479396-30479532)
chr8 (205-313)||(42221558-42221666)
chr8 (174-260)||(32707921-32708007)
chr8 (178-314)||(34307258-34307394)
chr8 (196-260)||(42710234-42710298)
chr8 (212-314)||(16383419-16383521)
chr8 (173-211)||(20074869-20074907)
chr8 (174-244)||(32032836-32032906)
[»] chr3 (41 HSPs)
chr3 (7-103)||(29555247-29555343)
chr3 (171-310)||(30801648-30801787)
chr3 (173-314)||(8076435-8076576)
chr3 (205-314)||(52629342-52629451)
chr3 (171-312)||(20764830-20764971)
chr3 (178-314)||(33644242-33644378)
chr3 (178-314)||(53982053-53982189)
chr3 (178-312)||(17470449-17470583)
chr3 (178-314)||(54868817-54868953)
chr3 (171-314)||(35536668-35536811)
chr3 (102-173)||(29555212-29555283)
chr3 (171-314)||(41189679-41189822)
chr3 (208-314)||(31456731-31456837)
chr3 (173-314)||(33118767-33118909)
chr3 (178-314)||(49607456-49607592)
chr3 (172-312)||(51419276-51419416)
chr3 (174-314)||(14623757-14623897)
chr3 (171-312)||(26141445-26141588)
chr3 (171-313)||(26754738-26754880)
chr3 (172-314)||(42823153-42823295)
chr3 (172-314)||(45058469-45058611)
chr3 (174-314)||(8956804-8956944)
chr3 (174-314)||(11347840-11347980)
chr3 (171-314)||(13897970-13898113)
chr3 (196-314)||(9563041-9563159)
chr3 (174-272)||(35965700-35965798)
chr3 (171-314)||(1758374-1758514)
chr3 (171-314)||(24699870-24700012)
chr3 (206-304)||(39670063-39670161)
chr3 (171-273)||(47531948-47532050)
chr3 (205-314)||(36331278-36331387)
chr3 (178-314)||(48587023-48587149)
chr3 (178-314)||(36707350-36707482)
chr3 (253-314)||(27714888-27714949)
chr3 (230-286)||(48375680-48375736)
chr3 (178-238)||(11095289-11095349)
chr3 (174-238)||(35093703-35093767)
chr3 (205-270)||(21746137-21746202)
chr3 (171-260)||(43746435-43746524)
chr3 (240-312)||(11907415-11907487)
chr3 (230-314)||(41080750-41080833)
[»] chr2 (39 HSPs)
chr2 (187-314)||(33436031-33436158)
chr2 (178-314)||(10249304-10249440)
chr2 (178-314)||(13438385-13438521)
chr2 (174-302)||(20700869-20700997)
chr2 (178-314)||(32505570-32505706)
chr2 (205-314)||(30915505-30915614)
chr2 (178-314)||(17473062-17473198)
chr2 (178-314)||(28863497-28863633)
chr2 (178-314)||(40701520-40701656)
chr2 (196-314)||(9058522-9058640)
chr2 (178-314)||(7465657-7465793)
chr2 (178-314)||(19930742-19930878)
chr2 (174-309)||(36168883-36169018)
chr2 (173-314)||(42257235-42257376)
chr2 (178-313)||(28381577-28381712)
chr2 (205-314)||(4060727-4060836)
chr2 (173-314)||(40613819-40613960)
chr2 (171-314)||(38732396-38732539)
chr2 (196-314)||(38882751-38882872)
chr2 (171-314)||(41758627-41758772)
chr2 (228-313)||(26891476-26891561)
chr2 (175-271)||(44152012-44152108)
chr2 (174-312)||(38273061-38273198)
chr2 (213-314)||(17819961-17820062)
chr2 (173-308)||(2533171-2533306)
chr2 (171-314)||(2997402-2997545)
chr2 (174-313)||(3737986-3738125)
chr2 (247-314)||(5574479-5574546)
chr2 (172-313)||(3440022-3440163)
chr2 (173-314)||(13365395-13365536)
chr2 (174-314)||(43490163-43490303)
chr2 (173-270)||(17823874-17823971)
chr2 (174-302)||(3034901-3035029)
chr2 (171-314)||(33436253-33436386)
chr2 (196-238)||(27864809-27864851)
chr2 (187-262)||(2329352-2329431)
chr2 (205-314)||(45097684-45097793)
chr2 (216-307)||(41575186-41575278)
chr2 (251-314)||(27864746-27864809)
[»] scaffold0110 (1 HSPs)
scaffold0110 (172-302)||(8779-8909)
[»] chr4 (36 HSPs)
chr4 (178-314)||(24995029-24995165)
chr4 (178-314)||(6034086-6034222)
chr4 (178-314)||(48182971-48183107)
chr4 (205-312)||(42044316-42044423)
chr4 (172-314)||(31910234-31910376)
chr4 (174-312)||(41823926-41824064)
chr4 (173-314)||(50052345-50052486)
chr4 (178-314)||(41236389-41236525)
chr4 (171-314)||(29239928-29240071)
chr4 (205-314)||(480396-480505)
chr4 (205-314)||(11511411-11511520)
chr4 (175-312)||(48647645-48647782)
chr4 (173-314)||(50526088-50526229)
chr4 (196-314)||(54473473-54473591)
chr4 (216-302)||(29234205-29234291)
chr4 (176-314)||(40574821-40574959)
chr4 (174-314)||(50813810-50813950)
chr4 (172-314)||(3481696-3481828)
chr4 (171-314)||(19670631-19670774)
chr4 (196-314)||(23608277-23608395)
chr4 (176-312)||(29977929-29978065)
chr4 (171-314)||(17983658-17983801)
chr4 (171-314)||(47986250-47986392)
chr4 (230-312)||(53352540-53352622)
chr4 (177-314)||(47104586-47104723)
chr4 (172-312)||(28480184-28480324)
chr4 (172-312)||(28481059-28481199)
chr4 (172-312)||(28481934-28482074)
chr4 (174-314)||(55475233-55475373)
chr4 (177-260)||(56300086-56300169)
chr4 (168-273)||(18924407-18924512)
chr4 (173-314)||(29547876-29548017)
chr4 (171-314)||(29589655-29589798)
chr4 (173-260)||(44536663-44536750)
chr4 (173-314)||(32767000-32767141)
chr4 (222-314)||(8343129-8343221)
[»] chr1 (34 HSPs)
chr1 (178-314)||(9474798-9474934)
chr1 (178-314)||(27564657-27564793)
chr1 (174-314)||(51898601-51898741)
chr1 (187-310)||(50630504-50630627)
chr1 (174-312)||(32813291-32813429)
chr1 (178-314)||(41758847-41758983)
chr1 (171-314)||(45044475-45044618)
chr1 (196-314)||(43174-43292)
chr1 (196-314)||(2581957-2582075)
chr1 (205-314)||(3000361-3000470)
chr1 (205-314)||(38595196-38595305)
chr1 (196-308)||(38632261-38632373)
chr1 (178-314)||(48716204-48716340)
chr1 (178-314)||(47452242-47452378)
chr1 (207-314)||(13414803-13414910)
chr1 (172-314)||(5958916-5959058)
chr1 (178-314)||(37649240-37649376)
chr1 (196-314)||(8346327-8346446)
chr1 (223-310)||(44548343-44548430)
chr1 (171-313)||(11152293-11152435)
chr1 (174-310)||(44454025-44454165)
chr1 (176-314)||(49811447-49811585)
chr1 (172-314)||(47748484-47748626)
chr1 (174-314)||(50590918-50591058)
chr1 (174-312)||(6260914-6261052)
chr1 (174-312)||(37926356-37926494)
chr1 (174-314)||(44332289-44332429)
chr1 (196-314)||(7740775-7740893)
chr1 (176-310)||(23597011-23597145)
chr1 (178-314)||(26274474-26274607)
chr1 (205-313)||(3302482-3302590)
chr1 (174-314)||(41608411-41608551)
chr1 (172-238)||(26440842-26440908)
chr1 (176-284)||(34339968-34340075)
[»] chr6 (21 HSPs)
chr6 (178-314)||(11427660-11427796)
chr6 (178-314)||(17598596-17598732)
chr6 (178-314)||(32869720-32869856)
chr6 (174-312)||(31976292-31976430)
chr6 (196-314)||(22880598-22880716)
chr6 (205-314)||(23128076-23128185)
chr6 (178-314)||(15832619-15832755)
chr6 (171-314)||(31952945-31953088)
chr6 (178-312)||(29857871-29858005)
chr6 (213-314)||(6209422-6209523)
chr6 (174-311)||(4231593-4231730)
chr6 (196-314)||(28536428-28536544)
chr6 (207-314)||(31109351-31109458)
chr6 (173-314)||(30341277-30341418)
chr6 (174-314)||(15989960-15990100)
chr6 (171-314)||(15507939-15508082)
chr6 (187-312)||(30870058-30870183)
chr6 (174-302)||(31110679-31110807)
chr6 (189-302)||(946430-946543)
chr6 (224-314)||(9379680-9379770)
chr6 (174-219)||(22421997-22422042)
[»] chr5 (28 HSPs)
chr5 (178-314)||(33149560-33149696)
chr5 (178-314)||(2740316-2740452)
chr5 (187-314)||(13811694-13811821)
chr5 (173-312)||(31009032-31009171)
chr5 (176-314)||(35943812-35943950)
chr5 (172-284)||(2177436-2177548)
chr5 (178-314)||(18520806-18520942)
chr5 (178-314)||(35785241-35785377)
chr5 (187-314)||(36732873-36733000)
chr5 (178-314)||(14831856-14831992)
chr5 (174-314)||(15409528-15409668)
chr5 (175-314)||(6679740-6679879)
chr5 (178-308)||(40145455-40145585)
chr5 (174-312)||(21370048-21370186)
chr5 (221-314)||(28177817-28177910)
chr5 (172-312)||(26720560-26720700)
chr5 (172-312)||(26990309-26990449)
chr5 (175-314)||(33825243-33825382)
chr5 (172-314)||(3921181-3921323)
chr5 (173-314)||(2252085-2252226)
chr5 (171-312)||(6259916-6260057)
chr5 (173-314)||(20073433-20073574)
chr5 (229-314)||(42414275-42414360)
chr5 (176-260)||(9603909-9603993)
chr5 (208-288)||(36875564-36875644)
chr5 (246-308)||(31132392-31132454)
chr5 (173-314)||(39688814-39688955)
chr5 (265-304)||(41470425-41470464)
[»] chr7 (39 HSPs)
chr7 (174-312)||(46033719-46033857)
chr7 (178-314)||(4999436-4999572)
chr7 (178-314)||(8080305-8080441)
chr7 (178-314)||(19329884-19330020)
chr7 (205-312)||(38837261-38837368)
chr7 (200-314)||(35137575-35137689)
chr7 (173-314)||(21234443-21234584)
chr7 (205-314)||(38267082-38267191)
chr7 (205-310)||(40957753-40957858)
chr7 (187-314)||(19436118-19436245)
chr7 (197-308)||(32951434-32951545)
chr7 (212-314)||(3784037-3784139)
chr7 (178-295)||(11044239-11044356)
chr7 (171-312)||(35522920-35523061)
chr7 (174-302)||(41423736-41423864)
chr7 (205-312)||(3694411-3694518)
chr7 (171-314)||(8238255-8238398)
chr7 (175-314)||(16374743-16374882)
chr7 (196-314)||(7389431-7389548)
chr7 (173-273)||(31735960-31736060)
chr7 (223-314)||(36208215-36208306)
chr7 (174-308)||(26296692-26296826)
chr7 (172-310)||(27744225-27744363)
chr7 (175-314)||(2318160-2318301)
chr7 (174-314)||(38044239-38044379)
chr7 (178-314)||(36362068-36362192)
chr7 (174-314)||(22343403-22343543)
chr7 (174-314)||(35468773-35468913)
chr7 (247-314)||(36361904-36361971)
chr7 (176-314)||(41915783-41915921)
chr7 (178-314)||(3434604-3434730)
chr7 (173-238)||(46374741-46374806)
chr7 (176-307)||(7727955-7728086)
chr7 (171-314)||(32564341-32564484)
chr7 (175-313)||(32045880-32046018)
chr7 (178-238)||(36361847-36361907)
chr7 (171-314)||(40846028-40846171)
chr7 (196-314)||(18207222-18207339)
chr7 (176-302)||(39255844-39255969)
[»] scaffold0321 (1 HSPs)
scaffold0321 (205-314)||(10058-10167)
[»] scaffold0237 (1 HSPs)
scaffold0237 (178-312)||(4073-4207)
[»] scaffold1268 (1 HSPs)
scaffold1268 (175-308)||(848-981)
[»] scaffold1267 (1 HSPs)
scaffold1267 (175-308)||(848-981)
[»] scaffold0018 (1 HSPs)
scaffold0018 (175-314)||(152540-152679)
[»] scaffold0316 (1 HSPs)
scaffold0316 (247-313)||(17097-17163)


Alignment Details
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 10284549 - 10284689
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| ||||||||||||||| ||||||||| |||||||| ||||||||| |||||||| |||||||||||| | ||||||||||    
T  10284549 ggaaaatgttacatagacaccttttattcttatacaaccttgtacaccccatgcactaggaagagagaagatgaaaggaaagagaaagtgtgcttgtgcg 10284648  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     |||||||||||||||||||||||||||| |||||||||||    
T  10284649 gggtccacgtgactacgtgtcaaatttttgtgtgggtgtca 10284689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 504043 - 504179
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||  | |||||||||| |||    
T  504043 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaatgtgtgcttgtgcggggt 504142  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  504143 ccacgtgactacgtgtcagatttttgtgtgggtgtca 504179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 12831225 - 12831089
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  12831225 aatgatacatagacaccatttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 12831126  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  12831125 ccacgtgactacgtgtcagatttttgtgtgggtgtca 12831089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 196 - 312
Target Start/End: Original strand, 44507027 - 44507143
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||| ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| ||||||||| || |||||||||||||||||||||    
T  44507027 tttattctcatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtatgcttgtacggggtccacgtgactacgtgtca 44507126  T
Q  296 aatttttatgtgggtgt 312  Q
     |||||| |||||||||    
T  44507127 gatttttgtgtgggtgt 44507143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 169 - 314
Target Start/End: Original strand, 8841345 - 8841490
Alignment:
Q  169 tcaaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgctt 268  Q
    |||| |||||||||||| |||||||  |||||||| |||||| |||||||| |||||||| |||||| || ||||| ||||||||||||||| | |||||    
T  8841345 tcaatggaaaatgttacatagacaccatttattctcatacactcttgtacaccccatgcactaggaaaagagaagaggagaggaaagagaaagtgtgctt 8841444  T
Q  269 gtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||| ||||||||||||||||||| | |||||| |||||||||||    
T  8841445 gtgcggggtccacgtgactacgtgttagatttttgtgtgggtgtca 8841490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 34012218 - 34012354
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  ||||||||  |||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  34012218 aatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 34012317  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||||||||||||||||||| |||||||||||    
T  34012318 ccacgtgactacgtgtcaaatttttgtgtgggtgtca 34012354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 14548100 - 14547964
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  14548100 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 14548001  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  14548000 ccacgtgactacgtgtcagatttttgtgtgggtgtca 14547964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 23122519 - 23122655
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||| | ||||| ||||||||| | ||||| |||| |||    
T  23122519 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaacaggagagaaaagagaaagtgtgcttatgcggggt 23122618  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  23122619 ccacgtgactacgtgtcagatttttgtgtgggtgtca 23122655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 37038661 - 37038521
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| || ||||  ||||||  |||||||||||||||| |||||||| ||||||||| ||||| ||||||||| ||||| | ||||||||||    
T  37038661 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcg 37038562  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     | ||||||||||||||||||| |||||| |||||||||||    
T  37038561 ggatccacgtgactacgtgtcagatttttgtgtgggtgtca 37038521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 175 - 314
Target Start/End: Complemental strand, 5958011 - 5957872
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 274  Q
    ||||||||||| || ||||  |||||||| ||||||||||||||| | |||||| ||||||||| ||||| ||||||||||||||| | || |||||||     
T  5958011 gaaaatgttacataaacaccctttattctcatacacccttgtacacctcatgcactaggaagagagaagaggagaggaaagagaaagtgtgattgtgcgg 5957912  T
Q  275 ggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||||||||||||||||||| |||||| |||||||||||    
T  5957911 gatccacgtgactacgtgtcagatttttgtgtgggtgtca 5957872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 15197511 - 15197375
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| ||||||| ||||||||  ||||||||||||||| | |||||||| |||||||  |||| ||||| ||||||||| | |||||||||| |||    
T  15197511 aatgatacatagacactttttattcccatacacccttgtacacctcatgcatttggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggt 15197412  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  15197411 ccacgtgactacgtgtcagatttttgtgtgggtgtca 15197375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 40423864 - 40424001
Alignment:
Q  177 aaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgagg 276  Q
    ||||| ||| ||||||| ||||||||  ||||||||||||||| | |||| ||||||||||| ||||| ||||| ||||||||| | |||||||||| ||    
T  40423864 aaatgatacatagacaccttttattcccatacacccttgtacacctcatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggg 40423963  T
Q  277 tccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||| ||||||||||||| |||||| ||||| |||||    
T  40423964 tccacatgactacgtgtcagatttttgtgtggatgtca 40424001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 43414498 - 43414639
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| |||||||  ||||||   ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | |||||||||    
T  43414498 aggaaaatgttacatagacaccctttattgccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 43414597  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | | |||| ||||| |||||| | |||||| |||||||||||    
T  43414598 gggatccatgtgaccacgtgttagatttttgtgtgggtgtca 43414639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 196 - 312
Target Start/End: Complemental strand, 9122345 - 9122229
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||  |||||| |||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | ||||||||||||| |||||    
T  9122345 tttattcccatacactcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacatgtca 9122246  T
Q  296 aatttttatgtgggtgt 312  Q
     |||||| |||||||||    
T  9122245 gatttttgtgtgggtgt 9122229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 173 - 308
Target Start/End: Original strand, 15048098 - 15048234
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgaga-ggaaagagaaaatatgcttgtg 271  Q
    ||||||||||||  |||||||  |||||||  ||||||||||||||||||||| |||||||||||| ||||| ||||   ||||||||| | ||||||||    
T  15048098 aggaaaatgttatatagacaccctttattccgatacacccttgtacatcccatacattaggaagagagaagaggagataaaaagagaaagtgtgcttgtg 15048197  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgg 308  Q
    || |||||| ||| |||||||||| |||||| |||||    
T  15048198 cggggtccatgtggctacgtgtcagatttttgtgtgg 15048234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 211 - 314
Target Start/End: Original strand, 1179895 - 1179998
Alignment:
Q  211 ccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggt 310  Q
    ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | ||||||||||   ||||| ||||||||||||| |||||| |||||||    
T  1179895 ccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggaatccacatgactacgtgtcagatttttgtgtgggt 1179994  T
Q  311 gtca 314  Q
    ||||    
T  1179995 gtca 1179998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 4854781 - 4854919
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||||||  |||||||| ||| ||||||||||||||||| |||||| ||||| ||||| ||||| ||||||||| | |||||||||     
T  4854781 ggaaaatgttacatagacactctttattctcatatacccttgtacatcccatacattagtaagagagaagaggagagaaaagagaaagtgtgcttgtgca 4854880  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     |||||| ||| | || | ||| |||||||||| |||||    
T  4854881 gggtccatgtggccacatatcagatttttatgtaggtgt 4854919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 172 - 313
Target Start/End: Original strand, 15258845 - 15258986
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| |||||||  ||||||   ||||||  |||||||||| ||    ||||||||| ||||| ||||||||||||||||| ||||||||    
T  15258845 aaggaaaatgttacatagacaccctttatttccatacacttttgtacatcctatattctaggaagagagaagaggagaggaaagagaaaatgtgcttgtg 15258944  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtc 313  Q
    |  |||||||||||| || ||||| |||||||||||| ||||    
T  15258945 cagggtccacgtgaccacatgtcagatttttatgtggatgtc 15258986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 171 - 304
Target Start/End: Original strand, 42354503 - 42354636
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| |||||||  |||||||| |||||||||| |||| |||||||| ||||||||| |||||  ||| |||||||||| | ||||| |    
T  42354503 aaaggaaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgcttat 42354602  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    | ||| ||||| |||  |||||||| ||||||||    
T  42354603 gtgagatccacatgaacacgtgtcagatttttat 42354636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 16056322 - 16056459
Alignment:
Q  177 aaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgagg 276  Q
    ||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||| ||    
T  16056322 aaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgggg 16056421  T
Q  277 tccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||  || | || ||||| |||||| |||||||||||    
T  16056422 tccatatggccacatgtcagatttttgtgtgggtgtca 16056459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 10621047 - 10621145
Alignment:
Q  216 tacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||||  ||||||||||| ||||| ||||| ||||||||| | |||||||||| | || | ||| |||||||||| |||||| |||||||||||    
T  10621047 tacatcccatatattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtgggtgtca 10621145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 284
Target Start/End: Complemental strand, 40467882 - 40467772
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| |||||| |  ||| |   ||||||| |||||  | ||||||||| ||||||||||||||||||||| | ||||||||||    
T  40467882 ggaaaatgttacatagacaccttttatccccataaatttttgtacaccccatagactaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcg 40467783  T
Q  274 aggtccacgtg 284  Q
    | |||||||||    
T  40467782 aagtccacgtg 40467772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 24307715 - 24307851
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||| |||    
T  24307715 aatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggt 24307814  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||  || | || | ||| |||||| |||||||||||    
T  24307815 ccatatggccacatatcagatttttgtgtgggtgtca 24307851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 30479396 - 30479532
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| |||||||||| | | ||||||||||||    
T  30479396 aatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcgaggt 30479495  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||  |  | || ||||| |||||||||||| |||||    
T  30479496 ccatatagccacatgtcagatttttatgtggatgtca 30479532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 205 - 313
Target Start/End: Complemental strand, 42221666 - 42221558
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| || ||  ||| ||||||| |||||||||| |||||||||| | |||||||  | ||||||  ||| ||||||||| |||||| |    
T  42221666 atacacccttgtacaccctatatatttggaagagagaagatgagatgaaagagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgt 42221567  T
Q  305 gtgggtgtc 313  Q
    |||||||||    
T  42221566 gtgggtgtc 42221558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 260
Target Start/End: Original strand, 32707921 - 32708007
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 260  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| ||||||||||    
T  32707921 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaa 32708007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 34307394 - 34307258
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | |||||||| |||    
T  34307394 aatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggt 34307295  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||  || | || ||||| |||||| |||||||||||    
T  34307294 tcatatgtccacatgtcagatttttgtgtgggtgtca 34307258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 196 - 260
Target Start/End: Original strand, 42710234 - 42710298
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 260  Q
    |||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| |||||||||    
T  42710234 tttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaa 42710298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 16383521 - 16383419
Alignment:
Q  212 cttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtg 311  Q
    |||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||| ||||||  || | || ||||| |||||| ||||||||    
T  16383521 cttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtg 16383422  T
Q  312 tca 314  Q
    |||    
T  16383421 tca 16383419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 20074869 - 20074907
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacc 211  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  20074869 aggaaaatgttacatagacacattttattctcatacacc 20074907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 32032906 - 32032836
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaaga 244  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||    
T  32032906 ggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaaga 32032836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 29555343 - 29555247
Alignment:
Q  7 gcaatgagagacaaacaaaaaactgacccaagccacaccaaatcaattagcttttcaccaaatacaatagaaccgtatcgtgttgtccaaataccaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555343 gcaatgagagacaaacaaaaaactgacccaagccacaccaaatcaattagcttttcaccaaatacaatagaaccgtatcgtgttgtccaaataccaa 29555247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 30801648 - 30801787
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||||| |||||| | ||||||||| ||||||||||||||||||||||| |||||||    
T  30801648 aaaggaaaatgttacatagacaccttttattctcatacacccttgtacaccccatgtactaggaagagagaagatgagaggaaagagaaaatgtgcttgt 30801747  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggt 310  Q
    | | ||||||  ||||||| ||||| |||||| |||||||    
T  30801748 gtggggtccatatgactacatgtcatatttttgtgtgggt 30801787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 8076576 - 8076435
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| |||||||  |||||||| ||||||  ||||||| |||||||| ||||||||| ||||| ||||||||||||||| | |||||||||    
T  8076576 aggaaaatgttacatagacaccatttattctcatacacttttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgc 8076477  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||||||||||||||||||| | |||||| |||||||||||    
T  8076476 ggggtccacgtgactacgtgttagatttttgtgtgggtgtca 8076435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 52629451 - 52629342
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||| |||||| |    
T  52629451 atacacccttgtacatcccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgt 52629352  T
Q  305 gtgggtgtca 314  Q
    ||||||||||    
T  52629351 gtgggtgtca 52629342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 171 - 312
Target Start/End: Original strand, 20764830 - 20764971
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| |||||||  |||||||| ||||||||||||||| ||||| |||||||||||| ||||||||||| ||||||||| | |||||||    
T  20764830 aaaggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagatgagagaaaagagaaagtgtgcttgt 20764929  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     || |||||| ||| | |||||||| |||||| |||||||||    
T  20764930 acggggtccatgtggccacgtgtcagatttttgtgtgggtgt 20764971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 33644378 - 33644242
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  |||||||||| |||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  33644378 aatgatacatagacaccctttattcccatacacccttatacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 33644279  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  33644278 ccacgtgactacgtgtcagatttttgtgtgggtgtca 33644242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 53982189 - 53982053
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  53982189 aatgatacatagacaccctttattcccatacaaccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 53982090  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  53982089 ccacgtgactacgtgtcagatttttgtgtgggtgtca 53982053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 17470583 - 17470449
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| |||||   |||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||| | |||    
T  17470583 aatgatacatagacaccatttattctcatacatatttgtacatcccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgtggggt 17470484  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    |||||||||||||||||| |||||| |||||||||    
T  17470483 ccacgtgactacgtgtcagatttttgtgtgggtgt 17470449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 54868817 - 54868953
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| ||||||| |||||||   ||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||| | || ||||||| |||    
T  54868817 aatgatacatagacaccttttatttccatacacccttgtacaccctatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggt 54868916  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||| ||||||||||| |||||| |||||||||||    
T  54868917 ccacgtaactacgtgtcagatttttgtgtgggtgtca 54868953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 314
Target Start/End: Complemental strand, 35536811 - 35536668
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| |||||||  |||||||| |||||||||| |||| |||||||| ||||||||| |||||  ||| ||||||| || | |||||||    
T  35536811 aaaggaaaatgttacatagacaccatttattctcatacacccttctacaccccatgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgt 35536712  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |  |||||||| |||| |||||||| ||||||||||||||||||    
T  35536711 gtaaggtccacatgaccacgtgtcacatttttatgtgggtgtca 35536668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 29555283 - 29555212
Alignment:
Q  102 aatacaatagaacagtatcgtgttgtccaaataccaagagaacaaacccaataaatgagactatccatcaaa 173  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29555283 aatacaatagaaccgtatcgtgttgtccaaataccaagagaacaaacccaataaatgaaactatccatcaaa 29555212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 41189679 - 41189822
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| |||||||  ||||||   |||||| ||||||||  |||| |||||||||||  ||||| ||||| ||||||||| | |||||||    
T  41189679 aaaggaaaatgttacatagacaccctttatttccatacactcttgtacactccatacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgt 41189778  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| |||||| ||| | |||||||||||||||||||||||||||    
T  41189779 gcggggtccatgtggccacgtgtcaaatttttatgtgggtgtca 41189822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 31456837 - 31456731
Alignment:
Q  208 cacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtg 307  Q
    |||||||||||| ||||||||||||||||||  |||| ||||| ||||||||| | |||||||||| ||||||| ||||||||||||| |||||| ||||    
T  31456837 cacccttgtacaccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtg 31456738  T
Q  308 ggtgtca 314  Q
    |||||||    
T  31456737 ggtgtca 31456731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 33118767 - 33118909
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaa-gatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||||||||||  ||||||   ||||||||||||||| |||||||| |||| |||| ||| || ||||||||||||||| | || || ||    
T  33118767 aggaaaatgttacgtagacaccctttatttccatacacccttgtacaccccatgcactagggagagagaaggaggagaggaaagagaaagtgtgtttctg 33118866  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     | | |||||||||||||||||||||||||| |||||||||||    
T  33118867 agggatccacgtgactacgtgtcaaatttttgtgtgggtgtca 33118909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 49607592 - 49607456
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  |||||||||||||||   ||||||||||||||||  |||| ||||| ||||||||| | |||||||| | | |    
T  49607592 aatgatacatagacaccctttattcccatacacccttgtacacgtcatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggat 49607493  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  49607492 ccacgtgactacgtgtcagatttttgtgtgggtgtca 49607456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 51419276 - 51419416
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| || |||| |||||||   ||||||||||||||| ||||| |||||||||||| ||| | ||||| ||||||||| | ||||||||    
T  51419276 aaggaaaatgttacataaacaccttttatttccatacacccttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtgtgcttgtg 51419375  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    || |||| | ||| | |||||||| |||||| |||||||||    
T  51419376 cggggtctatgtggccacgtgtcagatttttgtgtgggtgt 51419416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 14623757 - 14623897
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||||||  |||||||| ||||| |||| |||| | |||||| ||| ||||| |||||  ||| |||||||||| | |||||||| |    
T  14623757 ggaaaatgttacatagacaccatttattctcatacatccttctacacctcatgcactagaaagagagaagagaagatgaaagagaaagtgtgcttgtgtg 14623856  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||| |||  || ||||| ||||||||||||||||||    
T  14623857 aggtccacatgaacacatgtcagatttttatgtgggtgtca 14623897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 312
Target Start/End: Original strand, 26141445 - 26141588
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag--ggaagatgagaggaaagagaaaatatgctt 268  Q
    ||||||||||||||| |||||||  ||||||   |||||| |||||||| ||||| ||||||||||||   ||||| ||||| ||||||||| | |||||    
T  26141445 aaaggaaaatgttacatagacaccctttatttccatacactcttgtacaccccatacattaggaagagaaagaagaggagagaaaagagaaagtgtgctt 26141544  T
Q  269 gtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    ||| | |||||| ||||| |||||||| |||||| |||||||||    
T  26141545 gtgtggggtccatgtgaccacgtgtcagatttttgtgtgggtgt 26141588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 313
Target Start/End: Complemental strand, 26754880 - 26754738
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| |||||||  ||||||   ||||||| ||||||| || ||    ||||||||| ||||| ||||||||||||||||| |||||||    
T  26754880 aaaggaaaatgttacatagacactctttatttccatacacctttgtacaccctatattctaggaagagagaagaggagaggaaagagaaaatgtgcttgt 26754781  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtc 313  Q
    ||| |||||| ||||| || ||||| |||||| ||||| ||||    
T  26754780 gcggggtccatgtgaccacatgtcagatttttgtgtggatgtc 26754738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 314
Target Start/End: Complemental strand, 42823295 - 42823153
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  | | |||||||||| ||| ||| ||    
T  42823295 aaggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaataagaaagagaaagtatacttatg 42823196  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    || ||||||  |||| || |||||||||||| |||||||||||    
T  42823195 cggggtccatatgaccacatgtcaaatttttttgtgggtgtca 42823153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 45058469 - 45058611
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| ||||||| ||||| |   ||||||| ||||||| |||||| ||||||||||| |||||  ||| |||||||||| ||| ||||||    
T  45058469 aaggaaaatgttacatagacaccttttaattgcatacaccattgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtg 45058568  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    || ||||||  ||   || ||||| ||||||||||||||||||    
T  45058569 cggggtccatatggtcacatgtcagatttttatgtgggtgtca 45058611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 8956944 - 8956804
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||   |||||||| |||||||||| |||| ||  |||| ||||||||| |||||  ||| ||||||| || | ||||||||      
T  8956944 ggaaaatgttacatagacagcatttattctcatacacccttctacaccctgtgcactaggaagagagaagagaagatgaaagaggaagtgtgcttgtgta 8956845  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||| |||  |||||||| ||||||||||||||||||    
T  8956844 aggtccacatgaacacgtgtcacatttttatgtgggtgtca 8956804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 11347840 - 11347980
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||| ||| |||||||  |||||||  |||||||||| |||| ||||| |||||||||||| ||||| ||||| ||||||||| | ||||| |||     
T  11347840 ggaaaatggtacatagacaccctttattcccatacacccttatacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttatgca 11347939  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     |||||| ||| | |||||||| |||||| ||||| |||||    
T  11347940 gggtccatgtggccacgtgtcagatttttgtgtggatgtca 11347980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 13897970 - 13898113
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    |||| |||||||||  |||||||  |||||||| ||||||  || |||| ||||| || |||| |||| |||||  ||| |||||||||| | |||||||    
T  13897970 aaagaaaaatgttagatagacaccatttattctcatacacttttctacaccccatacactagggagagagaagagaagatgaaagagaaagtgtgcttgt 13898069  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||||||||| |||  |||||||| ||||||||||||||||||    
T  13898070 gtgaggtccacatgaacacgtgtcagatttttatgtgggtgtca 13898113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 9563159 - 9563041
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||  ||||||| ||||||| | |||||||||||||||| ||||| ||||| | ||||||| | || ||||||  | |||||||||||||||||||    
T  9563159 tttattcccatacacctttgtacaactcatgcattaggaagagagaagaggagagaagagagaaagtgtgtttgtgcaggatccacgtgactacgtgtca 9563060  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||||| ||| |||||    
T  9563059 gatttttatatggatgtca 9563041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 35965700 - 35965798
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||| | |||| |||| ||| ||  |||| ||||||||||||||| | |||||||||    
T  35965700 ggaaaatgttacatagacaccttttattctcatacacccttgtacacctcatgaattaagaaaagaaaagaggagaggaaagagaaagtgtgcttgtgc 35965798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 1758374 - 1758514
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    |||| |||||||||| || ||||  |||||||  ||||||| ||||||| |||||||||||||||||| ||||| |||| |||||||||||| || ||||    
T  1758374 aaagaaaaatgttacataaacactgtttattc--atacacctttgtaca-cccatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgt 1758470  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | |  |||||||| || |  ||||| |||||| |||||||||||    
T  1758471 gtggagtccacgtaaccatatgtcagatttttgtgtgggtgtca 1758514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 24699870 - 24700012
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| ||||||  ||||||||| ||||| | || |||| | |||  | ||||||||| ||||| ||||||||||||||| | || ||||    
T  24699870 aaaggaaaatgttacatagacatcttttattctcatacatc-ttatacacctcataaactaggaagagagaagaggagaggaaagagaaagtgtgtttgt 24699968  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     |  |||||||||| | ||||| || ||||||||||||||||||    
T  24699969 acagggtccacgtggccacgtgccagatttttatgtgggtgtca 24700012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 304
Target Start/End: Complemental strand, 39670161 - 39670063
Alignment:
Q  206 tacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    |||||||||||||||| ||| ||||| |||||| ||||| ||||| |||||| || | ||| ||| |||||||||| |||  |||||||||||||||||    
T  39670161 tacacccttgtacatctcatacattaagaagagagaagaggagagaaaagaggaagtgtgcgtgtacgaggtccacatgatcacgtgtcaaatttttat 39670063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 47532050 - 47531948
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| || ||||  |||||||  |||||| ||||||||| |||| |||||||||||| ||| | ||||| ||||||||| | |||||||    
T  47532050 aaaggaaaatgttacataaacaccctttattcccatacacacttgtacattccatacattaggaagagagaataggagagaaaagagaaagtgtgcttgt 47531951  T
Q  271 gcg 273  Q
    |||    
T  47531950 gcg 47531948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 36331278 - 36331387
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||| ||||||  || | || ||||| |||||| |    
T  36331278 atacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgt 36331377  T
Q  305 gtgggtgtca 314  Q
    ||||||||||    
T  36331378 gtgggtgtca 36331387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 48587023 - 48587149
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||| |||||||||||||||||||||||||||||| |||          |||||||| | | |||||||| | |    
T  48587023 aatgatacatagacaccctttattcccatatacccttgtacatcccatgcattaggaagagagaa----------aagagaaagtgtacttgtgcgggat 48587112  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||||||| |||||||    
T  48587113 ccacgtgactacgtgtcagatttttatgtaggtgtca 48587149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 36707350 - 36707482
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| ||||||| ||||||||  |||||  |||||||| | |||||||||||||||| ||||| ||||| ||||||||| | |||    ||| | |    
T  36707350 aatgatacatagacaccttttattcccatacattcttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgc----gcgggat 36707445  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||| ||||||||||| |||||| ||||| |||||    
T  36707446 ccacgtaactacgtgtcagatttttgtgtggatgtca 36707482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 27714888 - 27714949
Alignment:
Q  253 aagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||| | |||||||||| ||||||| ||||||||||||| |||||| |||||||||||    
T  27714888 aagagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtca 27714949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 286
Target Start/End: Original strand, 48375680 - 48375736
Alignment:
Q  230 taggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 286  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||| |||||| |||||    
T  48375680 taggaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggtccatgtgac 48375736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 11095289 - 11095349
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 238  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| || |||||||||||||||    
T  11095289 aatgatacatagacaccctttattctcatacacccttgtacacccgatgcattaggaagag 11095349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 35093767 - 35093703
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 238  Q
    |||||||||||| ||||||   |||||||| ||||||| ||||||||| |||||| |||||||||    
T  35093767 ggaaaatgttacctagacatcatttattctcatacacctttgtacatctcatgcactaggaagag 35093703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 21746137 - 21746202
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| | |||  ||| ||||||| |||||||||| |||||||||| | |||||||    
T  21746137 atacacccttgtacacctcatatatttggaagagagaagatgagatgaaagagaaagtgtgcttgt 21746202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 43746524 - 43746435
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 260  Q
    |||| |||||||||| || ||||  ||| || | ||||||||||||||| | |||||| ||||||||  ||||| |||| ||||||||||    
T  43746524 aaagaaaaatgttacataaacaccctttgttgtcatacacccttgtacacctcatgcactaggaagaaagaagaggagatgaaagagaaa 43746435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 11907487 - 11907415
Alignment:
Q  240 gaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||  |||| || ||||| |||||| |||| ||||    
T  11907487 gaagaggagagaaaagagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgt 11907415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 41080833 - 41080750
Alignment:
Q  230 taggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||| ||||| |||| |||||||||||| |||||||| | ||||||| |||| || | ||| ||||||  ||||||||||    
T  41080833 taggaagagagaagaggagatgaaagagaaaatgtgcttgtgtg-ggtccacatgaccacatatcagatttttgcgtgggtgtca 41080750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 39)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 187 - 314
Target Start/End: Original strand, 33436031 - 33436158
Alignment:
Q  187 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 286  Q
    ||||||| ||||||||| ||||||||||||||| | |||||||||||||||| ||||||||||||||||||||| | |||||||||| ||||||||||||    
T  33436031 tagacaccttttattctcatacacccttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtgcttgtgcggggtccacgtgac 33436130  T
Q  287 tacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||| | |||||| |||||||||||    
T  33436131 tacgtgttagatttttgtgtgggtgtca 33436158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 10249304 - 10249440
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| ||||||||||||||||||  |||| ||||| ||||||||| | |||||||||| |||    
T  10249304 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgcggggt 10249403  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  10249404 ccacgtgactacgtgtcagatttttgtgtgggtgtca 10249440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 13438521 - 13438385
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  13438521 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 13438422  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  13438421 ccacgtgactacgtgtcagatttttgtgtgggtgtca 13438385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 20700997 - 20700869
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||||||  |||||||  ||||||||||||||| |||||||| ||||||||| ||||| ||||||||||||||| | ||||| ||||    
T  20700997 ggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttatgcg 20700898  T
Q  274 aggtccacgtgactacgtgtcaaattttt 302  Q
     ||||||||||||||||||||| ||||||    
T  20700897 gggtccacgtgactacgtgtcagattttt 20700869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 32505570 - 32505706
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| ||||||||||| |||||| ||||| ||||| ||| ||||| | |||||||||| |||    
T  32505570 aatgatacatagacactctttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaatagaaagtgtgcttgtgcggggt 32505669  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  32505670 ccacgtgactacgtgtcagatttttgtgtgggtgtca 32505706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 30915614 - 30915505
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||| ||||||||    
T  30915614 atacacccttgtacaccccatgtattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttat 30915515  T
Q  305 gtgggtgtca 314  Q
    ||||| ||||    
T  30915514 gtgggggtca 30915505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 17473198 - 17473062
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  17473198 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 17473099  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  17473098 ccacgtgactacgtgtcagatttttgtgtgggtgtca 17473062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 28863633 - 28863497
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||  ||||||||| | |||||||||| |||    
T  28863633 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggt 28863534  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  28863533 ccacgtgactacgtgtcagatttttgtgtgggtgtca 28863497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 40701656 - 40701520
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| ||||||| |||||||   ||||||||||||||| || ||||||||||||||| ||||||||||| ||||||||| | || ||||||| |||    
T  40701656 aatgatacatagacaccttttatttccatacacccttgtacacccgatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcggggt 40701557  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||| ||||||||||| |||||| |||||||||||    
T  40701556 ccacgtaactacgtgtcagatttttgtgtgggtgtca 40701520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 9058640 - 9058522
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||  |||||| |||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||| |||||||||||||    
T  9058640 tttattcccatacactcttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacatgactacgtgtca 9058541  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||| |||||||||||    
T  9058540 gatttttgtgtgggtgtca 9058522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 7465657 - 7465793
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||  ||||||||| | |||||||| | |||    
T  7465657 aatgatacatagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaagagataaaagagaaagtgtgcttgtgtggggt 7465756  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  7465757 ccacgtgactacgtgtcagatttttgtgtgggtgtca 7465793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 19930742 - 19930878
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| ||||||| ||||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||| | || ||||||| |||    
T  19930742 aatgatacatagacaccttttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 19930841  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||| ||||||||||||| |||||| ||||| |||||    
T  19930842 ccacatgactacgtgtcagatttttgtgtggatgtca 19930878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 174 - 309
Target Start/End: Complemental strand, 36169018 - 36168883
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| || ||||  |||||||| |||||| |||||||| ||||| |||||||||||| ||| | ||||| ||||||||| ||||||||||||    
T  36169018 ggaaaatgttacataaacaccctttattctcatacactcttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtatgcttgtgcg 36168919  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtggg 309  Q
     |||||| ||| | ||||||||||||||| ||||||    
T  36168918 gggtccatgtggccacgtgtcaaatttttgtgtggg 36168883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 42257376 - 42257235
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    |||||||| |||| |||||||  ||||||  ||||||| |||||||| ||||| |||||||||||  ||||| ||||| ||||||||| | |||||||||    
T  42257376 aggaaaatattacatagacaccctttatttctatacactcttgtacaccccatacattaggaagaaagaagaggagagaaaagagaaagtgtgcttgtgc 42257277  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | |||||| ||| | |||||||| ||||||||||||||||||    
T  42257276 ggggtccatgtggccacgtgtcagatttttatgtgggtgtca 42257235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 178 - 313
Target Start/End: Original strand, 28381577 - 28381712
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||  ||||||||||| ||||||||||| ||||||||| | ||||||||||  ||    
T  28381577 aatgatacatagacaccctttattcccatacatccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtgcggagt 28381676  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtc 313  Q
    ||| |||||||||||||| |||||| ||||||||||    
T  28381677 ccatgtgactacgtgtcagatttttgtgtgggtgtc 28381712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 4060836 - 4060727
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||| ||||| | ||||| |||| | ||||||| ||||||||||| |||||| |    
T  4060836 atacacccttgtacaccccatgcattaggaagagagaagatgagagaaaaaagaaagtgtgcttatgcgggatccacgtaactacgtgtcagatttttgt 4060737  T
Q  305 gtgggtgtca 314  Q
    |||| |||||    
T  4060736 gtggatgtca 4060727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 40613819 - 40613960
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||||| ||||| ||||| |||||  ||| | ||||| ||||||||| | |||||||||    
T  40613819 aggaaaatgttacatagacaccctttattcccatacacccttgtacaccccatacattatgaagaaagaataggagagaaaagagaaagtgtgcttgtgc 40613918  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | |||||| ||| | |||||||| |||||| |||||||||||    
T  40613919 ggggtccatgtggccacgtgtcagatttttgtgtgggtgtca 40613960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 171 - 314
Target Start/End: Complemental strand, 38732539 - 38732396
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| ||||||| ||||| |   ||||| ||||||||||| |||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  38732539 aaaggaaaatgttacatagacaccttttaattgcatacatccttgtacatctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 38732440  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||||||  |||| || ||||| |||||| |||||||||||    
T  38732439 gcggggtccatatgaccacatgtcagatttttgtgtgggtgtca 38732396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 38882751 - 38882872
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc---gaggtccacgtgactacgtg 292  Q
    |||||||  ||||||||||||||| ||||||||||||||||||  ||||| |||| ||||||||| |  ||||||||   | ||||||||||||||||||    
T  38882751 tttattcccatacacccttgtacaccccatgcattaggaagagataagataagagaaaagagaaagtgcgcttgtgcgggggggtccacgtgactacgtg 38882850  T
Q  293 tcaaatttttatgtgggtgtca 314  Q
    ||| |||||| ||||| |||||    
T  38882851 tcagatttttgtgtggatgtca 38882872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 314
Target Start/End: Complemental strand, 41758772 - 41758627
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgc--tt 268  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||| |||||  ||||||||||| ||||| ||||  ||||||||||| |||  ||    
T  41758772 aaagaaaaatgttacatagacacattttattctcatacatccttgtacaccccatatattaggaagagagaagaggagataaaagagaaaatgtgcgttt 41758673  T
Q  269 gtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     |||||| |  | ||| |||||||||| |||||||| | |||||||    
T  41758672 atgcgagatttatgtggctacgtgtcagatttttatataggtgtca 41758627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 228 - 313
Target Start/End: Original strand, 26891476 - 26891561
Alignment:
Q  228 attaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtc 313  Q
    ||||||||||| |||||  |||||||||||||||| ||||||| ||||||||||||||| || ||||| |||||| ||||||||||    
T  26891476 attaggaagagagaagagaagaggaaagagaaaatgtgcttgttcgaggtccacgtgaccacatgtcagatttttgtgtgggtgtc 26891561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 175 - 271
Target Start/End: Complemental strand, 44152108 - 44152012
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    ||||||||||| || |||| ||||||||  ||||||||||||| ||| |||||||||||||||| ||||| |||| |||||||||| | ||||||||    
T  44152108 gaaaatgttacataaacaccttttattcgcatacacccttgtatatctcatgcattaggaagagagaagaggagatgaaagagaaagtgtgcttgtg 44152012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 38273061 - 38273198
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    ||||||| |||| || ||||  |||||||| ||||| | ||||||| ||||| |||||||||||| ||| | ||||| ||||||||| | |||| |||||    
T  38273061 ggaaaatattacataaacaccatttattctcatacatc-ttgtacaccccatacattaggaagagagaataggagagaaaagagaaagtgtgctagtgcg 38273159  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     |||||| ||| |||||||||| |||||| |||||||||    
T  38273160 gggtccatgtggctacgtgtcagatttttgtgtgggtgt 38273198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 17819961 - 17820062
Alignment:
Q  213 ttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    ||||||| | |||||||||||||||| ||||| |||| |||||||||||| || ||||| | ||||||||| || || ||||| |||||| |||||||||    
T  17819961 ttgtacacctcatgcattaggaagagagaagaggagatgaaagagaaaatgtgtttgtgtggggtccacgtaaccacatgtcagatttttgtgtgggtgt 17820060  T
Q  313 ca 314  Q
    ||    
T  17820061 ca 17820062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 308
Target Start/End: Complemental strand, 2533306 - 2533171
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||  || ||||  |||||||  ||||||||||||||| ||||| |||| ||||||| ||||| ||||  ||||| ||| | |||||||||    
T  2533306 aggaaaatgttatatatacaccctttattcccatacacccttgtacaccccatacattgggaagagagaagaggagataaaagaaaaagtgtgcttgtgc 2533207  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgg 308  Q
    | |||| | ||| |||||||||| |||||| |||||    
T  2533206 ggggtctatgtggctacgtgtcagatttttgtgtgg 2533171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 2997402 - 2997545
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||| ||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  2997402 aaagggaaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 2997501  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||||||  || | || ||||| |||||| |||||||||||    
T  2997502 gcggggtccatatggccacatgtcagatttttgtgtgggtgtca 2997545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 313
Target Start/End: Complemental strand, 3738125 - 3737986
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||||||  | |||| | ||||||| ||||||| || ||    ||||||||  ||||| ||||||||| ||||||| ||||||||||    
T  3738125 ggaaaatgttacatagacaccctatattttcatacacctttgtacaccctatattctaggaagaaagaagaggagaggaaaaagaaaatgtgcttgtgcg 3738026  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtc 313  Q
     ||||||| |||| || ||||| |||||| ||||||||||    
T  3738025 gggtccacatgaccacatgtcagatttttgtgtgggtgtc 3737986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 5574479 - 5574546
Alignment:
Q  247 agaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||| ||||||||| | |||||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  5574479 agagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttatgtgggtgtca 5574546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 313
Target Start/End: Complemental strand, 3440163 - 3440022
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| |||||||  ||||||   ||||||| ||||||| || ||    ||| ||||| ||||| ||||||||||||||||| ||||||||    
T  3440163 aaggaaaatgttacatagacaccctttatttccatacacctttgtacaccctatattctagaaagagagaagaggagaggaaagagaaaatgtgcttgtg 3440064  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtc 313  Q
    || ||||||||| |  || ||| | |||||| ||||||||||    
T  3440063 cggggtccacgtaatcacatgttagatttttgtgtgggtgtc 3440022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 13365536 - 13365395
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| ||||||| ||||| |   || |||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||||    
T  13365536 aggaaaatgttacatagacaccttttaattgcattcacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgc 13365437  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||||||  ||   || ||||| |||||| |||||||||||    
T  13365436 ggggtccatatggtcacatgtcagatttttgtgtgggtgtca 13365395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 43490303 - 43490163
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| || ||| ||||||||||| |||||  ||| |||||| ||| | | ||||||||    
T  43490303 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccctatgtattaggaagagagaagagaagaagaaagataaagtgtacttgtgcg 43490204  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||  || | || ||||| |||||| |||||||||||    
T  43490203 gggtccatatggccacatgtcagatttttgtgtgggtgtca 43490163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 270
Target Start/End: Complemental strand, 17823971 - 17823874
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||| ||||||   ||||||   ||||||||||||||| |||||  ||| ||||||| |||||||||| |||||||||| | |||||||    
T  17823971 aggaaaatgttacatagacatcctttatttacatacacccttgtacaccccatatatttggaagagagaagatgagatgaaagagaaagtgtgcttgt 17823874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 302
Target Start/End: Original strand, 3034901 - 3035029
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| ||||| |   ||||||| | ||||| | |||| ||||||||||| |||||  ||| |||||||||| ||| ||||||||    
T  3034901 ggaaaatgttacatagacaccttttaattgcatacaccttggtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcg 3035000  T
Q  274 aggtccacgtgactacgtgtcaaattttt 302  Q
     ||||||  |||| || ||||| ||||||    
T  3035001 gggtccatatgaccacatgtcagattttt 3035029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 314
Target Start/End: Complemental strand, 33436386 - 33436253
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| ||||||| ||||||||| ||||||          | |||| | ||||||||| ||||| || |||||||||||| | |||||||    
T  33436386 aaaggaaaatgttacatagacaccttttattctcatacac----------ctcatgaactaggaagagagaagaggataggaaagagaaagtgtgcttgt 33436297  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    || | |||||| ||   |||||||| ||||||||||||||||||    
T  33436296 gcaaagtccacatggtcacgtgtcagatttttatgtgggtgtca 33436253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 238
Target Start/End: Complemental strand, 27864851 - 27864809
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagag 238  Q
    |||||||| |||||||||||||||||||||| |||||||||||    
T  27864851 tttattctcatacacccttgtacatcccatgtattaggaagag 27864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 2329431 - 2329352
Alignment:
Q  187 tagacacattttattcttatacacccttgtacatcccatgcat-ta---ggaagagggaagatgagaggaaagagaaaat 262  Q
    ||||||| |||||||||||| ||||||||||||||||||  || ||   ||||||| ||||| |||||||||||||||||    
T  2329431 tagacactttttattcttattcacccttgtacatcccatatatctatcgggaagagagaagaggagaggaaagagaaaat 2329352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 45097684 - 45097793
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    |||||| ||||||||||| ||| ||||||||||| |||||  ||| |||||||||| | | |||||||| ||||||  || | || ||||| |||||| |    
T  45097684 atacactcttgtacatccgatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgt 45097783  T
Q  305 gtgggtgtca 314  Q
     |||||||||    
T  45097784 atgggtgtca 45097793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 41575278 - 41575186
Alignment:
Q  216 tacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg-cgaggtccacgtgactacgtgtcaaatttttatgtg 307  Q
    |||||| |||||||||||| ||| ||||| |||| |||||||||| | ||||||||  | ||||||| |||| || |||||||||||| ||||    
T  41575278 tacatctcatgcattaggacgagagaagaggagatgaaagagaaagtgtgcttgtgtaggggtccacatgaccacatgtcaaatttttgtgtg 41575186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 27864809 - 27864746
Alignment:
Q  251 gaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||| | ||||| |||| ||||||||||| ||||||||| |||||| ||||| |||||    
T  27864809 gaaagagaaagtgtgcttttgcggggtccacgtgattacgtgtcagatttttgtgtggatgtca 27864746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 172 - 302
Target Start/End: Original strand, 8779 - 8909
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||  ||||||||||| ||||||| ||||||||||||||| | ||||||    
T  8779 aaggaaaatgttacatagacaccttttattcttatacacccttgtacaccccatatattaggaagagagaagatgggaggaaagagaaaatgtacttgtg 8878  T
Q  272 cgaggtccacgtgactacgtgtcaaattttt 302  Q
     | |||||||||||||| |||||||||||||    
T  8879 tggggtccacgtgactatgtgtcaaattttt 8909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 24995029 - 24995165
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||| ||||||| ||||||||||| |||||| ||||| ||||| ||||||||||| |||||||||| |||    
T  24995029 aatgatacatagacaccctttattcccatacaccattgtacaccccatgcattaagaagagagaagaggagagaaaagagaaaatgtgcttgtgcggggt 24995128  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||||||||||||||||||||||    
T  24995129 ccacgtgactacgtgtcaaatttttatgtgggtgtca 24995165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 6034222 - 6034086
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  6034222 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 6034123  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||| ||||| |||||| |||||||||||    
T  6034122 ccacgtgactacatgtcagatttttgtgtgggtgtca 6034086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 48182971 - 48183107
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| ||||||||||| |||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  48182971 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaagaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 48183070  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  48183071 ccacgtgactacgtgtcagatttttgtgtgggtgtca 48183107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 205 - 312
Target Start/End: Original strand, 42044316 - 42044423
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||||||||||| |||||| |    
T  42044316 atacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgt 42044415  T
Q  305 gtgggtgt 312  Q
    ||||||||    
T  42044416 gtgggtgt 42044423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 172 - 314
Target Start/End: Complemental strand, 31910376 - 31910234
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| |||||||  |||||||  |||||| |||||||||||||| |||||||||||| ||||||||||| ||||||||| | ||||||||    
T  31910376 aaggaaaatgttacatagacaccatttattcccatacactcttgtacatcccatacattaggaagagagaagatgagagaaaagagaaagtgtgcttgtg 31910277  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    || |||||| ||| ||| |||||| |||||| |||||||||||    
T  31910276 cggggtccatgtggctatgtgtcagatttttgtgtgggtgtca 31910234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 41824064 - 41823926
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||||||  |||||||| ||||||| ||||||| | |||||||||||||||| ||||| ||||| ||||||||| | ||||||||||    
T  41824064 ggaaaatgttacatagacaccatttattctcatacacctttgtacacctcatgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcg 41823965  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     |||||| |||||||||||||| |||||| |||||||||    
T  41823964 gggtccatgtgactacgtgtcagatttttgtgtgggtgt 41823926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 50052345 - 50052486
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| |||||||  |||||||  ||||||| ||||||| |  ||||| ||||||||| ||||| ||||||||||||||| | |||||||||    
T  50052345 aggaaaatgttacatagacaccctttattcccatacacctttgtacaccttatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgc 50052444  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||||||||||||||||||||| |||||| |||||||||||    
T  50052445 ggggtccacgtgactacgtgtcagatttttgtgtgggtgtca 50052486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 41236525 - 41236389
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  41236525 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 41236426  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| ||||| |||||    
T  41236425 ccacgtgactacgtgtcagatttttgtgtggatgtca 41236389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 171 - 314
Target Start/End: Complemental strand, 29240071 - 29239928
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| |||||||  |||||||  |||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||| | |||||||    
T  29240071 aaaggaaaatgttacatagacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgt 29239972  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | | ||||||||||||||||||| | |||||| ||||| |||||    
T  29239971 gtggggtccacgtgactacgtgttagatttttgtgtggatgtca 29239928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 480396 - 480505
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||| ||||||| |||||||||||||||||| ||||| ||||| ||||||||| | ||||||| || ||||||||||||||||||||| |||||| |    
T  480396 atacacctttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgt 480495  T
Q  305 gtgggtgtca 314  Q
    ||||||||||    
T  480496 gtgggtgtca 480505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 11511411 - 11511520
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| | ||||||||| |||||| |||||  |||| ||||||||| | |||||||||| ||||||||||||||||||||| ||||||||    
T  11511411 atacacccttgtacacctcatgcattaagaagagagaagagaagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttat 11511510  T
Q  305 gtgggtgtca 314  Q
    ||||||||||    
T  11511511 gtgggtgtca 11511520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 48647645 - 48647782
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 274  Q
    ||||||||||| ||||||   |||||| ||||||| | |||||||| | ||||| ||||||||| ||||| ||||||||||||||| | ||||||||||     
T  48647645 gaaaatgttacatagacatcatttatttttatacatctttgtacattctatgcactaggaagagagaagaggagaggaaagagaaattgtgcttgtgcgg 48647744  T
Q  275 ggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     ||||||||||| |||||| | ||||||||||||||||    
T  48647745 agtccacgtgaccacgtgttagatttttatgtgggtgt 48647782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 50526088 - 50526229
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| || ||||  ||||||  |||||||||||||||| |||||||| ||||||||| ||||| ||||||||| |||||   |||||||||    
T  50526088 aggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagcgtgcttgtgc 50526187  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |   |||||||||| |||||||| |||||| |||||||||||    
T  50526188 ggaatccacgtgaccacgtgtcagatttttgtgtgggtgtca 50526229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 54473473 - 54473591
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||  |||||||||||||||  ||||| ||||||||||| ||||| ||||| ||||| ||| | |||||||||| ||||||||||||||||||| |    
T  54473473 tttattcccatacacccttgtacactccatgtattaggaagagagaagaggagagaaaagataaagtgtgcttgtgcggggtccacgtgactacgtgtta 54473572  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||| |||||||||||    
T  54473573 gatttttgtgtgggtgtca 54473591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 216 - 302
Target Start/End: Original strand, 29234205 - 29234291
Alignment:
Q  216 tacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaattttt 302  Q
    |||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||||||||||| ||||||    
T  29234205 tacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagattttt 29234291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 40574959 - 40574821
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 275  Q
    |||||||||  ||||||| ||||||||| ||||||||||||||| |||||  ||||||||||| ||||| ||||| ||||||||| | ||||||| || |    
T  40574959 aaaatgttagatagacaccttttattctcatacacccttgtacaccccatatattaggaagagagaagaggagagaaaagagaaagtgtgcttgttcggg 40574860  T
Q  276 gtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     |||| ||  |  ||||||| |||||| |||||||||||    
T  40574859 atccatgtagcagcgtgtcagatttttgtgtgggtgtca 40574821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 50813810 - 50813950
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||||| |||| ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  50813810 ggaaaatgttacatagacaccttttaattgcatacacccttgtacatctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 50813909  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||| ||  |||| || ||||| |||||| |||||||||||    
T  50813910 gggttcatatgaccacatgtcagatttttgtgtgggtgtca 50813950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 314
Target Start/End: Complemental strand, 3481828 - 3481696
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| |||||||  |||||||| |||||||||          ||||| ||| ||||| ||||||| ||||||||||||| | ||||||||    
T  3481828 aaggaaaatgttacatagacaccctttattctcatacaccct----------atgcactagaaagagagaagatgggaggaaagagaaagtgtgcttgtg 3481739  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     | |||||||||||||| |||||| |||||| |||||||||||    
T  3481738 tggggtccacgtgactatgtgtcagatttttgtgtgggtgtca 3481696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 19670631 - 19670774
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  19670631 aaaggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 19670730  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||||||  || | || ||||| |||||| |||| ||||||    
T  19670731 gcggggtccatatggccacatgtcagatttttgtgtgagtgtca 19670774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 23608395 - 23608277
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||  ||||| || |||||| | |||||||||||||||| ||||| ||||  ||||||||| | |||||||| |  || |||||||||||||||||    
T  23608395 tttattcccatacatccctgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgtggagttcacgtgactacgtgtca 23608296  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||| |||||||||||    
T  23608295 gatttttgtgtgggtgtca 23608277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 312
Target Start/End: Complemental strand, 29978065 - 29977929
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 275  Q
    |||||||||| |||| |  |||||||| ||||||| |||||||| ||||| ||||||  ||||  ||||  ||| |||||||||| | |||||||| | |    
T  29978065 aaaatgttacatagatatcttttattcctatacacacttgtacaccccatacattagtgagagaaaagagaagatgaaagagaaagtgtgcttgtgtggg 29977966  T
Q  276 gtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    |||||  ||||||||||||| |||||| |||||||||    
T  29977965 gtccatatgactacgtgtcagatttttgtgtgggtgt 29977929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 17983658 - 17983801
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||| ||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  17983658 aaagggaaatgttacatagacactttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 17983757  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||||||  || | || ||||| |||||| |||||||||||    
T  17983758 gcggggtccatatggccacatgtcagatttttgtgtgggtgtca 17983801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 314
Target Start/End: Complemental strand, 47986392 - 47986250
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| ||||||| ||| |||   |||||||||||||||||||||| ||||||||||| |||||  | | |||||||||| | | |||||    
T  47986392 aaaggaaaatgttacatagacacctttaattgc-atacacccttgtacatcccatgtattaggaagagagaagagaataagaaagagaaagtgtacttgt 47986294  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||||||  || | || ||||| |||||| ||||| |||||    
T  47986293 gcggggtccatatggccacatgtcagatttttgtgtggatgtca 47986250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 53352540 - 53352622
Alignment:
Q  230 taggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    ||||||||| ||||| ||||| ||||||||| |||||||||||| ||||||| | ||||||||||| |||||| ||| |||||    
T  53352540 taggaagagagaagaggagagaaaagagaaagtatgcttgtgcggggtccacttaactacgtgtcagatttttgtgtaggtgt 53352622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 314
Target Start/End: Complemental strand, 47104723 - 47104586
Alignment:
Q  177 aaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgagg 276  Q
    ||||||||||||||||| |||||||||  ||||  || ||||| | ||||||||| |||||| ||||| |||| |||||||||| | || ||||| | ||    
T  47104723 aaatgttacgtagacactttttattctcgtacattctagtacacctcatgcattaagaagagagaagaggagatgaaagagaaagtgtgtttgtgtgggg 47104624  T
Q  277 tccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    || |    || ||||||||||||||| |||||||||||    
T  47104623 tcaataaaaccacgtgtcaaatttttgtgtgggtgtca 47104586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 28480184 - 28480324
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| |||||||  |||||    ||||| ||||||||| | |||||| ||||||||| ||||| |||| ||| |||||| | || |||||    
T  28480184 aaggaaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtg 28480283  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     | ||||||| ||||||| ||||| |||||| |||| ||||    
T  28480284 tggggtccacatgactacatgtcagatttttgtgtgagtgt 28480324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 28481059 - 28481199
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| |||||||  |||||    ||||| ||||||||| | |||||| ||||||||| ||||| |||| ||| |||||| | || |||||    
T  28481059 aaggaaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtg 28481158  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     | ||||||| ||||||| ||||| |||||| |||| ||||    
T  28481159 tggggtccacatgactacatgtcagatttttgtgtgagtgt 28481199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 312
Target Start/End: Original strand, 28481934 - 28482074
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| |||||||  |||||    ||||| ||||||||| | |||||| ||||||||| ||||| |||| ||| |||||| | || |||||    
T  28481934 aaggaaaatgttacatagacaccctttataagaatacatccttgtacaactcatgcactaggaagagagaagaggagatgaaggagaaagtgtgtttgtg 28482033  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     | ||||||| ||||||| ||||| |||||| |||| ||||    
T  28482034 tggggtccacatgactacatgtcagatttttgtgtgagtgt 28482074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 55475373 - 55475233
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | ||| |||     
T  55475373 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttatgca 55475274  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||  || | || ||||| |||||| |||||||||||    
T  55475273 gggtccatatggccacatgtcagatttttgtgtgggtgtca 55475233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 56300086 - 56300169
Alignment:
Q  177 aaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 260  Q
    ||||||||||||||||   |||||||| |||||  |||||||||| ||| |||||| ||||| ||||| |||||||||||||||    
T  56300086 aaatgttacgtagacattctttattctcatacaatcttgtacatctcatacattagaaagagagaagaggagaggaaagagaaa 56300169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 18924407 - 18924512
Alignment:
Q  168 atcaaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgct 267  Q
    |||||||||||||||||| ||||||| ||||| |   |||||||||| |||| | |||| ||||||||||| |||||  ||| |||||||||| | | ||    
T  18924407 atcaaaggaaaatgttacatagacaccttttaattgcatacacccttttacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtact 18924506  T
Q  268 tgtgcg 273  Q
    ||||||    
T  18924507 tgtgcg 18924512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 29547876 - 29548017
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||| ||| | | ||| |||    
T  29547876 aggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagaaaaagtgtacttatgc 29547975  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | | ||||  || | || ||||| |||||| |||||||||||    
T  29547976 gggatccatatggccacatgtcagatttttgtgtgggtgtca 29548017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 29589655 - 29589798
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    |||||||||| |||| ||||||| ||||| |   |||||| |||||||| | |||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  29589655 aaaggaaaatattacatagacaccttttaattgcatacactcttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 29589754  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | | ||||||  || | || | ||| |||||| |||||||||||    
T  29589755 gtggggtccatatggccacatatcagatttttgtgtgggtgtca 29589798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 44536663 - 44536750
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 260  Q
    ||||||||||||| ||||||||||||| |   |||||  |||||||| || ||| ||||||||||| |||||  ||| ||||||||||    
T  44536663 aggaaaatgttacatagacacattttaattgcatacattcttgtacaccctatgtattaggaagagagaagagaagaagaaagagaaa 44536750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 32767141 - 32767000
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| ||||||||||||| |   |||||||||||||||  | ||| ||||| ||||| || ||  ||| |||||||||| | | |||||||    
T  32767141 aggaaaatgttacatagacacattttaattgcatacacccttgtacactctatgtattagaaagagagaggagaagaagaaagagaaagtgtacttgtgc 32767042  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
      ||||||  || | || ||||| |||||| | |||||||||    
T  32767041 agggtccatatggccacatgtcagatttttgtatgggtgtca 32767000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 8343129 - 8343221
Alignment:
Q  222 ccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||| ||||||||||| |||||  ||| |||||||||| ||| ||| |||| ||||||  || | || ||||| |||||||||| |||||||    
T  8343129 ccatgtattaggaagagagaagagaagaagaaagagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgtaggtgtca 8343221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 9474798 - 9474934
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | || ||||||| |||    
T  9474798 aatgatacatagacactctttattctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 9474897  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  9474898 ccacgtgactacgtgtcagatttttgtgtgggtgtca 9474934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 27564657 - 27564793
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  27564657 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 27564756  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||| ||||||||| |||||| |||||||||||    
T  27564757 ccacgtgattacgtgtcagatttttgtgtgggtgtca 27564793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 51898601 - 51898741
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| || ||||  ||||||  |||||||||||||||| |||||||| ||||||||| ||||| ||||||||| ||||| | ||||||||||    
T  51898601 ggaaaatgttacataaacaccctttatttctatacacccttgtacaccccatgcactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgcg 51898700  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     | ||||||||||||||||||| |||||| |||||||||||    
T  51898701 ggatccacgtgactacgtgtcagatttttgtgtgggtgtca 51898741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 187 - 310
Target Start/End: Complemental strand, 50630627 - 50630504
Alignment:
Q  187 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 286  Q
    |||||||  |||||||| ||||||||||||||| || ||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||    
T  50630627 tagacaccatttattctcatacacccttgtacaccctatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgac 50630528  T
Q  287 tacgtgtcaaatttttatgtgggt 310  Q
    ||||||||| |||||| |||||||    
T  50630527 tacgtgtcagatttttgtgtgggt 50630504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 32813429 - 32813291
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||||||  |||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | ||||||||||    
T  32813429 ggaaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcg 32813330  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     |||||| ||||| |||||||| |||||| |||||||||    
T  32813329 gggtccatgtgaccacgtgtcagatttttgtgtgggtgt 32813291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 41758983 - 41758847
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | || ||||||| |||    
T  41758983 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggt 41758884  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| |||||||||||||| |||||| ||||| |||||    
T  41758883 ccatgtgactacgtgtcagatttttgtgtggttgtca 41758847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 45044475 - 45044618
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||| ||||| |||||||||||| |||||  |||| ||||||||||| || ||||    
T  45044475 aaaggaaaatgttacgtagacatcatttattctcatacacccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaaatgtgtttgt 45044574  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| |||||| ||| |||| ||||| |||||| | |||||||||    
T  45044575 gcggggtccatgtggctacatgtcagatttttgtatgggtgtca 45044618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 43292 - 43174
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    ||||||||||||||| |||||||| |||||||||||| ||||| || || ||||| ||||||||| | ||||||||||  ||||||||||||||||||||    
T  43292 tttattcttatacactcttgtacaccccatgcattagaaagagagaggaggagagaaaagagaaagtgtgcttgtgcggagtccacgtgactacgtgtca 43193  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||| |||||||||||    
T  43192 gatttttgtgtgggtgtca 43174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 2582075 - 2581957
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| ||| ||||| | |||||||||| |||||||||||||||||||||    
T  2582075 tttattctaatacacccttgtacacctcatgtattaggaagagagaagaggagagaaaaaagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 2581976  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||| |||||||||||    
T  2581975 gatttttgtgtgggtgtca 2581957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 3000470 - 3000361
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| |||||  ||||||||||| ||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||| |||||| |    
T  3000470 atacacccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgt 3000371  T
Q  305 gtgggtgtca 314  Q
    ||||||||||    
T  3000370 gtgggtgtca 3000361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 38595305 - 38595196
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| |||||  ||||||||||| ||||||||||| ||||||||| | ||||||| || ||||||||||||||||||||| |||||| |    
T  38595305 atacacccttgtacaccccatatattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacggggtccacgtgactacgtgtcagatttttgt 38595206  T
Q  305 gtgggtgtca 314  Q
    ||||||||||    
T  38595205 gtgggtgtca 38595196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 196 - 308
Target Start/End: Original strand, 38632261 - 38632373
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||| ||| | |||||||||| |||||||||||||||||||||    
T  38632261 tttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagaaaaagtgtgcttgtgcggggtccacgtgactacgtgtca 38632360  T
Q  296 aatttttatgtgg 308  Q
     |||||| |||||    
T  38632361 gatttttgtgtgg 38632373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 48716204 - 48716340
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| || || ||||| ||| | |||||||||| |||    
T  48716204 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggt 48716303  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| ||||| |||||    
T  48716304 ccacgtgactacgtgtcagatttttgtgtggatgtca 48716340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 47452242 - 47452378
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||| ||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  47452242 aatgatacatagacactctttattcccatacatccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 47452341  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||| | |||||| |||||||||||    
T  47452342 ccacgtgactacgtgttagatttttgtgtgggtgtca 47452378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 207 - 314
Target Start/End: Complemental strand, 13414910 - 13414803
Alignment:
Q  207 acacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgt 306  Q
    ||||||| |||||  ||||||||||||||||| |||||||| || ||||||||||| |||||||| | ||||||||||||||||||| | |||||| |||    
T  13414910 acaccctagtacactccatgcattaggaagagagaagatgatagaaaagagaaaatgtgcttgtgtggggtccacgtgactacgtgttagatttttgtgt 13414811  T
Q  307 gggtgtca 314  Q
    ||||||||    
T  13414810 gggtgtca 13414803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 5958916 - 5959058
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| ||||||||||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | ||||||    
T  5958916 aaggaaaatgttacatagacacattttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtg 5959015  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    || ||||||  |||| || ||||| |||||| |||||||||||    
T  5959016 cggggtccatatgaccacatgtcagatttttgtgtgggtgtca 5959058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 37649376 - 37649240
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| |||| |||| | ||||||||||   |    
T  37649376 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagggaaagtgtgcttgtgcggaat 37649277  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     |||||||| |||||||| |||||| |||||||||||    
T  37649276 tcacgtgaccacgtgtcagatttttgtgtgggtgtca 37649240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 8346327 - 8346446
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaa-gatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtc 294  Q
    |||||||| ||||||| |||||||  |||||||||||||||||  || || ||||| ||||||||| | |||||||||  ||||||||||||||||||||    
T  8346327 tttattctcatacacctttgtacactccatgcattaggaagagaaaaagaggagagaaaagagaaagtgtgcttgtgcagggtccacgtgactacgtgtc 8346426  T
Q  295 aaatttttatgtgggtgtca 314  Q
    | |||||| |||||||||||    
T  8346427 agatttttgtgtgggtgtca 8346446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 223 - 310
Target Start/End: Original strand, 44548343 - 44548430
Alignment:
Q  223 catgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggt 310  Q
    |||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||||||||||| |||||| |||||||    
T  44548343 catgcattaggaagagagaagaagagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggt 44548430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 313
Target Start/End: Original strand, 11152293 - 11152435
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||  |||||||  |||||||| ||||| |||| |||| |||||||| | ||||||| ||||| ||||||||| |||||   |||||||    
T  11152293 aaaggaaaatgttatatagacaccatttattctcatacatccttctacaccccatgcactgggaagagagaagaggagaggaaaaagaaagcgtgcttgt 11152392  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtc 313  Q
    ||| |||| || ||||||||||||| |||||| ||||| ||||    
T  11152393 gcggggtctacatgactacgtgtcagatttttgtgtggatgtc 11152435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 44454165 - 44454025
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtac----atcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttg 269  Q
    |||||||||||| || ||||  ||||||||||||||||||| |||    | |||||||||||||||||| ||||||||||||||||| ||| | ||||||    
T  44454165 ggaaaatgttacataaacaccatttattcttatacacccttatactctgaccccatgcattaggaagagagaagatgagaggaaagaaaaagtgtgcttg 44454066  T
Q  270 tgcgaggtccacgtgactacgtgtcaaatttttatgtgggt 310  Q
    || | | ||||||| || || ||||| |||||| |||||||    
T  44454065 tgtgggatccacgtaaccacatgtcagatttttgtgtgggt 44454025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 49811447 - 49811585
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 275  Q
    |||||||||| |||||||  |||||||| |||||||||||| || | ||| |||||||||||| ||||| ||||| ||||||||| | ||||||||||      
T  49811447 aaaatgttacatagacaccctttattctcatacacccttgtgcaccacatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgga 49811546  T
Q  276 gtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| |  || |||||||||| |||||| ||||| |||||    
T  49811547 gtctatatggctacgtgtcagatttttgtgtggatgtca 49811585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 172 - 314
Target Start/End: Complemental strand, 47748626 - 47748484
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| ||||||| ||||| |   |||||| |||||||| |||||| ||||||||||| |||||  ||| |||||||||| ||| ||||||    
T  47748626 aaggaaaatgttacatagacaccttttaattgcatacactcttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtg 47748527  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    || | ||||  || | || ||||| |||||||| |||||||||    
T  47748526 cgggatccatatggccacatgtcagatttttatatgggtgtca 47748484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 50590918 - 50591058
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||| || ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  50590918 ggaaaatgttacatagataccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 50591017  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||  || | || ||||| |||||| |||||||||||    
T  50591018 gggtccatatggccacatgtcagatttttgtgtgggtgtca 50591058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 6261052 - 6260914
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| || ||||  |||||| | ||||||| ||||||| || ||  | ||| ||||| ||||| |||| |||| ||||||| ||||| ||||    
T  6261052 ggaaaatgttacatacacaccatttattttcatacacctttgtacaccctatatactagaaagagagaagaggagaagaaatagaaaatgtgcttatgcg 6260953  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     |||||||||||| || ||| | ||||||||||||||||    
T  6260952 gggtccacgtgaccacatgttagatttttatgtgggtgt 6260914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 37926356 - 37926494
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    ||||||| |||  |||||||  |||||||  ||||| ||||||||| ||||| |||||||||||| |||||  |||| ||||||||| | | ||||| ||    
T  37926356 ggaaaatattatatagacaccatttattcacatacatccttgtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtacttgtacg 37926455  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     | |||| ||| | |||||||| ||||||||||||||||    
T  37926456 ggatccatgtggccacgtgtcagatttttatgtgggtgt 37926494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 44332289 - 44332429
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||| || ||||| |   |||||||||||||||  | ||| ||||||||||| |||||  ||| |||||||||| ||| ||||||||    
T  44332289 ggaaaatgttacatagataccttttaattgcatacacccttgtacactctatgtattaggaagagagaagagaagaagaaagagaaagtatacttgtgcg 44332388  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||   | | || ||||| ||||||||||||||||||    
T  44332389 gggtccatagggccacatgtcagatttttatgtgggtgtca 44332429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 7740893 - 7740775
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    ||||||||  |||| | ||||||||||||||||  |||||||| ||||| |||| |||| |||||||||  ||||| | ||||||| |  | ||||||||    
T  7740893 tttattctcgtacatctttgtacatcccatgcaacaggaagagagaagaggagatgaaaaagaaaatatatttgtgtggggtccacatagccacgtgtca 7740794  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||||||| |||||||    
T  7740793 tatttttatgtaggtgtca 7740775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 23597011 - 23597145
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 275  Q
    |||||||||| ||||||  ||||||||| ||||| ||||| ||| | |||| | |||||| || ||| | ||||| ||||| ||| | || |||||| ||    
T  23597011 aaaatgttacatagacattttttattctcatacatccttggacacctcatgaactaggaatagagaataggagagaaaagataaagtgtgtttgtgcaag 23597110  T
Q  276 gtccacgtgactacgtgtcaaatttttatgtgggt 310  Q
    ||| ||||| | |||||||| ||||||||||||||    
T  23597111 gtcaacgtggccacgtgtcagatttttatgtgggt 23597145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 26274607 - 26274474
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  |||||||||||| |||| ||||||||||||||||   ||| ||||| ||||| ||| | | |||||||  | |    
T  26274607 aatgatacatagacaccctttattcccatacacccttgtgcatctcatgcattaggaagag---agaagagagaaaagaaaaagtgtacttgtgcaggat 26274511  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||||| |||||| |||||| ||||| |||||    
T  26274510 ccacgtgactatgtgtcagatttttctgtggatgtca 26274474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 313
Target Start/End: Original strand, 3302482 - 3302590
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| || ||  ||| ||||||| |||||||||| |||| ||||| | |||||||  | ||||||  ||| ||||||||| |||||| |    
T  3302482 atacacccttgtacaccctatatatttggaagagagaagatgagatgaaaaagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgt 3302581  T
Q  305 gtgggtgtc 313  Q
    |||||||||    
T  3302582 gtgggtgtc 3302590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 41608411 - 41608551
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| || |||| ||||| |   ||||||||||||||| || ||| ||||||||||| |||||  ||| |||||||||| | | ||||| ||    
T  41608411 ggaaaatgttacataaacaccttttaattgcatacacccttgtacaccctatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtacg 41608510  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||  || | || ||||| |||||| |||| ||||||    
T  41608511 gggtccatatggccacatgtcagatttttgtgtgagtgtca 41608551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 238
Target Start/End: Complemental strand, 26440908 - 26440842
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 238  Q
    |||||||||||||| || |||   ||||||| ||||||||||||||||| |||| ||||| ||||||    
T  26440908 aaggaaaatgttacataaacatcctttattcctatacacccttgtacattccatacattacgaagag 26440842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 284
Target Start/End: Original strand, 34339968 - 34340075
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 275  Q
    |||||||||| ||||||| ||||||| | | |||| |||||||| || ||||| | ||||||| |||||  |||| ||| ||||| | ||||| | ||||    
T  34339968 aaaatgttacatagacaccttttattttca-acactcttgtacaccctatgcacttggaagagagaagagaagagaaaaaagaaactgtgcttatacgag 34340066  T
Q  276 gtccacgtg 284  Q
    |||||||||    
T  34340067 gtccacgtg 34340075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 11427796 - 11427660
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  11427796 aatgatacatagacaccctttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 11427697  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  11427696 ccacgtgactacgtgtcagatttttgtgtgggtgtca 11427660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 17598732 - 17598596
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| ||||||| |||||||   ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  17598732 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 17598633  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||| |||||||| |||||| |||||||||||    
T  17598632 ccacgtgacaacgtgtcagatttttgtgtgggtgtca 17598596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 32869856 - 32869720
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  32869856 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 32869757  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  32869756 ccacgtgactacgtgtcagatttttgtgtgggtgtca 32869720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 31976430 - 31976292
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||||||  |||||||| ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | ||||||||||    
T  31976430 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcg 31976331  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     ||| || ||||| |||||||| |||||| |||||||||    
T  31976330 gggttcatgtgaccacgtgtcagatttttgtgtgggtgt 31976292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 22880598 - 22880716
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||  ||||||||||||||| |||||| ||||||||||| ||||| ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  22880598 tttattcccatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 22880697  T
Q  296 aatttttatgtgggtgtca 314  Q
     | |||| |||||||||||    
T  22880698 gaattttgtgtgggtgtca 22880716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 23128076 - 23128185
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||||||||||||||||||||||  |||| ||||| ||||||||| | |||||||| | | ||||||||||||||||||| |||||| |    
T  23128076 atacacccttgtacatcccatgcattaggaagagaaaagaggagagaaaagagaaagtgtgcttgtgtgggatccacgtgactacgtgtcagatttttgt 23128175  T
Q  305 gtgggtgtca 314  Q
    ||||||||||    
T  23128176 gtgggtgtca 23128185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 15832755 - 15832619
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| |||||||||||  |||||||  ||||||||||||||| |||||||||||||||||  ||||| ||||  ||||||||||| |  ||||||  | |    
T  15832755 aatgatacgtagacaccctttattccaatacacccttgtacaccccatgcattaggaagatagaagaggagaaaaaagagaaaatgtatttgtgcaggat 15832656  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||||||||||||||||||| |||||||||||    
T  15832655 ccacgtgactacgtgtcaaatttttgtgtgggtgtca 15832619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 31952945 - 31953088
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| |||||||  |||||||| ||||| |||| |||| |||||||| ||||||||| |||||  ||| |||||||||| | || ||||    
T  31952945 aaaggaaaatgttacatagacaccatttattctcatacatccttctacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgtttgt 31953044  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||||||||| |||  || ||||| ||||||||||||||||||    
T  31953045 gtgaggtccacatgaacacatgtcagatttttatgtgggtgtca 31953088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 29858005 - 29857871
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| |||||  |||| ||||||||| | ||||| |||| | |    
T  29858005 aatgatacatagacaccatttattcccatacacccttgtacaccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggat 29857906  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    |||||| ||||||||||| |||||| |||||||||    
T  29857905 ccacgtaactacgtgtcagatttttgtgtgggtgt 29857871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 6209422 - 6209523
Alignment:
Q  213 ttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    |||||||||||||||||||||||||| ||||| ||||| ||||||||| | |||| ||||| |||||||||||||||||| || |||||| |||| ||||    
T  6209422 ttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgctagtgcggggtccacgtgactacgtgacagatttttgtgtgagtgt 6209521  T
Q  313 ca 314  Q
    ||    
T  6209522 ca 6209523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 311
Target Start/End: Complemental strand, 4231730 - 4231593
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  4231730 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 4231631  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtg 311  Q
     ||||||  || | |||||||| |||||| ||||||||    
T  4231630 gggtccatatggccacgtgtcagatttttgtgtgggtg 4231593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 314
Target Start/End: Original strand, 28536428 - 28536544
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||| | ||||||||||||||| |||||||| |||||||||||||||  |||  ||||||||| | |||||||| | ||||||| ||||  |||||||    
T  28536428 tttattttcatacacccttgtacaccccatgcagtaggaagagggaagagaagataaaagagaaagtgtgcttgtgtggggtccacatgac--cgtgtca 28536525  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||| |||||||||||    
T  28536526 gatttttgtgtgggtgtca 28536544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 314
Target Start/End: Original strand, 31109351 - 31109458
Alignment:
Q  207 acacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgt 306  Q
    ||||||||||| | ||||||||||||||||||  |||| ||||| ||||||||| | | ||| |||| |||| |||||||||||||||| |||||| |||    
T  31109351 acacccttgtataccccatgcattaggaagagaaaagaggagagaaaagagaaagtgtacttttgcggggtctacgtgactacgtgtcagatttttgtgt 31109450  T
Q  307 gggtgtca 314  Q
    || |||||    
T  31109451 ggatgtca 31109458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 30341277 - 30341418
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | |||||||    
T  30341277 aggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgc 30341376  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||||||  || | || ||||| |||||| |||||||||||    
T  30341377 ggggtccatatggccacatgtcagatttttgtgtgggtgtca 30341418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 15989960 - 15990100
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  15989960 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 15990059  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||  || | || ||||| |||||| |||||||||||    
T  15990060 gggtccatatggccacatgtcagatttttgtgtgggtgtca 15990100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 15507939 - 15508082
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| ||||||| ||||| |   ||||| ||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | |||||    
T  15507939 aaaggaaaatgttacatagacaccttttaattgcatacatccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgt 15508038  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||||||  || | || ||||| |||||| |||||||||||    
T  15508039 gcggggtccatatggccacatgtcagatttttgtgtgggtgtca 15508082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 312
Target Start/End: Complemental strand, 30870183 - 30870058
Alignment:
Q  187 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 286  Q
    |||||||  |||||| | ||||||| ||||||| || ||  | ||| ||||| ||||| ||||||||||||||||| |||||||||| |||||| |||||    
T  30870183 tagacaccctttattttcatacacctttgtacaccctatatactagaaagagagaagaggagaggaaagagaaaatgtgcttgtgcggggtccatgtgac 30870084  T
Q  287 tacgtgtcaaatttttatgtgggtgt 312  Q
     || ||| | |||||||| |||||||    
T  30870083 cacatgttagatttttatatgggtgt 30870058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 302
Target Start/End: Original strand, 31110679 - 31110807
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||   ||||||   ||||||| ||||||| ||||| |||||||||||| |||||  |||| ||||||||| | |||||||||     
T  31110679 ggaaaatgttacatagacatcctttatttccatacacctttgtacaccccatacattaggaagagagaagagtagagaaaagagaaagtgtgcttgtgca 31110778  T
Q  274 aggtccacgtgactacgtgtcaaattttt 302  Q
     |||||| |||  ||||||||| ||||||    
T  31110779 gggtccatgtggttacgtgtcagattttt 31110807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 946543 - 946430
Alignment:
Q  189 gacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgacta 288  Q
    ||||| ||||||| | |||||  |||||||||| |||||||||||||||| ||||| ||||| ||||||||| | |||| | ||| | |  |||||||||    
T  946543 gacactttttattgtcatacattcttgtacatctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgctagagcgggatttacgtgacta 946444  T
Q  289 cgtgtcaaattttt 302  Q
     |||||| ||||||    
T  946443 ggtgtcagattttt 946430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 9379680 - 9379770
Alignment:
Q  224 atgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||  ||||  ||| |||||||||||| || ||||| ||| ||||| || | ||||||||||||||| | |||||||||    
T  9379680 atgcattaggaagagaaaagagaagatgaaagagaaaatgtgtttgtgtgagatccacatggccacgtgtcaaatttttgtatgggtgtca 9379770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 22421997 - 22422042
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtaca 219  Q
    |||||||||||| |||||||  |||||||| |||||||||||||||    
T  22421997 ggaaaatgttacatagacaccatttattctcatacacccttgtaca 22422042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 33149560 - 33149696
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  ||||||||  |||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | |    
T  33149560 aatgatacatagacaccctttattctcgtacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggat 33149659  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||||||||||||||||||| |||||||||||    
T  33149660 ccacgtgactacgtgtcaaatttttgtgtgggtgtca 33149696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 2740452 - 2740316
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  |||||||||||||||||||||||||||||||||| ||||  ||||| ||||||||| | |||||||||| | |    
T  2740452 aatgatacatagacaccctttattcccatacacccttgtacatcccatgcattaggaagagagaaggggagagaaaagagaaagtgtgcttgtgcgggat 2740353  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  2740352 ccacgtgactacgtgtcagatttttgtgtgggtgtca 2740316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 187 - 314
Target Start/End: Complemental strand, 13811821 - 13811694
Alignment:
Q  187 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 286  Q
    |||||||  |||||||  ||||| |||||||||||||||||||||||||||| ||||| |||||  |||||||| | |||||||||| ||||||||||||    
T  13811821 tagacaccatttattcccatacatccttgtacatcccatgcattaggaagagagaagaggagagagaagagaaagtgtgcttgtgcggggtccacgtgac 13811722  T
Q  287 tacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||| |||||| |||||||||||    
T  13811721 tacgtgtcagatttttgtgtgggtgtca 13811694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 173 - 312
Target Start/End: Complemental strand, 31009171 - 31009032
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| |||||||  |||||||| ||||||| ||||||| |||||||| ||||||||| |||||  |||||||| ||||| | |||||||||    
T  31009171 aggaaaatgttacatagacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagagaagaggaaatagaaagtgtgcttgtgc 31009072  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    | | ||||||||||||||||||| |||||| |||||||||    
T  31009071 gggatccacgtgactacgtgtcagatttttgtgtgggtgt 31009032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 35943812 - 35943950
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 275  Q
    |||||||||| |||||||||||||||   ||||||||||||||| |||||||| |||||||||  |||| ||||||||||||||| | |||||||| | |    
T  35943812 aaaatgttacatagacacattttatttccatacacccttgtacaccccatgcactaggaagagaaaagaggagaggaaagagaaagtgtgcttgtgtggg 35943911  T
Q  276 gtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||| ||||||||||| |||||| |||||||||||    
T  35943912 atccacgtaactacgtgtcagatttttgtgtgggtgtca 35943950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 172 - 284
Target Start/End: Complemental strand, 2177548 - 2177436
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||| ||||||||    
T  2177548 aaggaaaatgttacagagacacattttattctcatacacccttgtacatccaatgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtg 2177449  T
Q  272 cgaggtccacgtg 284  Q
     | | ||||||||    
T  2177448 tgggatccacgtg 2177436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 18520806 - 18520942
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||| | ||||||||||||||| | |||||||||||||||| ||||| ||||  ||||||||| | |||||||||| |||    
T  18520806 aatgatacatagacaccctttattttcatacacccttgtacacctcatgcattaggaagagagaagaggagataaaagagaaagtgtgcttgtgcggggt 18520905  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  18520906 ccacgtgactacgtgtcagatttttgtgtgggtgtca 18520942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 35785377 - 35785241
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| ||||||| |||||||   ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| | || ||||||| | |    
T  35785377 aatgatacatagacaccttttatttccatacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtgtgattgtgcgggat 35785278  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||| ||||||||||| |||||| |||||||||||    
T  35785277 ccacgtaactacgtgtcagatttttgtgtgggtgtca 35785241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 187 - 314
Target Start/End: Original strand, 36732873 - 36733000
Alignment:
Q  187 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 286  Q
    |||||||  |||||||  ||||||||||||||| | |||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||    
T  36732873 tagacaccctttattcccatacacccttgtacacctcatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgac 36732972  T
Q  287 tacgtgtcaaatttttatgtgggtgtca 314  Q
    || |||||| |||||| |||||||||||    
T  36732973 tatgtgtcagatttttgtgtgggtgtca 36733000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 14831992 - 14831856
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| ||||| ||||  ||| ||||| | |||||||||| | |    
T  14831992 aatgatacatagacaccctttattcccatacatccttgtacaccccatgcattaggaagagagaagaggagaaaaaaaagaaagtgtgcttgtgcgggat 14831893  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| ||||||||||||||||||    
T  14831892 ccacgtgactacgtgtcagatttttatgtgggtgtca 14831856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 15409528 - 15409668
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| || ||||  |||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||| | | ||||||||||    
T  15409528 ggaaaatgttacataaacaccctttattcgcatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagagagtgtgcttgtgcg 15409627  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     |||||| ||| |||||||||| |||||| |||||||||||    
T  15409628 gggtccatgtggctacgtgtcagatttttgtgtgggtgtca 15409668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 175 - 314
Target Start/End: Complemental strand, 6679879 - 6679740
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 274  Q
    ||||||||||| ||||||   |||||| | ||||||||||||||| || || |||||||||||| ||||| ||||| ||||||||||| || |||||||     
T  6679879 gaaaatgttacatagacatcatttattgtcatacacccttgtacaccctatacattaggaagagagaagaggagagaaaagagaaaatgtgtttgtgcgg 6679780  T
Q  275 ggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||| ||||| |||||||| |||||| |||||||||||    
T  6679779 ggtccatgtgaccacgtgtcagatttttgtgtgggtgtca 6679740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 308
Target Start/End: Complemental strand, 40145585 - 40145455
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| ||| ||||||||||| | | |||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  40145585 aatgatacatagacaccctttattctcatatacccttgtacacctcgtgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 40145486  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgg 308  Q
    |||||||||||||||||| |||||| |||||    
T  40145485 ccacgtgactacgtgtcagatttttgtgtgg 40145455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 174 - 312
Target Start/End: Complemental strand, 21370186 - 21370048
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| || ||||  |||||| | ||||||| |||||||||  ||  | ||||||||  ||||||||||||||||||||||| || |||||||    
T  21370186 ggaaaatgttacataaacaccctttattttcatacacctttgtacatcttatatactaggaagaaagaagatgagaggaaagagaaaatgtgtttgtgcg 21370087  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
     |||||||||||| || ||||| ||||||  ||||||||    
T  21370086 gggtccacgtgaccacatgtcagatttttgagtgggtgt 21370048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 314
Target Start/End: Complemental strand, 28177910 - 28177817
Alignment:
Q  221 cccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||| |||||||||||||||||| ||||| ||||||||| | || ||||||| |||||| ||||| |||||||| |||||| |||||||||||    
T  28177910 cccatacattaggaagagggaagaggagagaaaagagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgtca 28177817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 26720700 - 26720560
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||  ||||||   |||||||| ||||||||| ||||| ||||| |||||||||||| |||||  |||| ||||||||| | ||||||||    
T  26720700 aaggaaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtg 26720601  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    || | |||| ||| | |||||||| |||||| ||| |||||    
T  26720600 cgggatccatgtggccacgtgtcagatttttttgtaggtgt 26720560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 172 - 312
Target Start/End: Complemental strand, 26990449 - 26990309
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||  ||||||   |||||||| ||||||||| ||||| ||||| |||||||||||| |||||  |||| ||||||||| | ||||||||    
T  26990449 aaggaaaatgttatatagacatcatttattctcatacaccctagtacaccccatacattaggaagagagaagagaagagaaaagagaaagtgtgcttgtg 26990350  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    || | |||| ||| | |||||||| |||||| ||| |||||    
T  26990349 cgggatccatgtggccacgtgtcagatttttttgtaggtgt 26990309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 33825243 - 33825382
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 274  Q
    ||||||||||| | |||||  |||||||| ||||| |||| |||| |||||||| ||||||||| |||||  |||  ||||||||| | ||||||||  |    
T  33825243 gaaaatgttacattgacaccatttattctcatacagccttctacaccccatgcactaggaagagagaagagaagataaaagagaaagtgtgcttgtgtaa 33825342  T
Q  275 ggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||| |||  |||||||| ||||||||||||||||||    
T  33825343 ggttcacatgaacacgtgtcagatttttatgtgggtgtca 33825382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 172 - 314
Target Start/End: Original strand, 3921181 - 3921323
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | ||||||    
T  3921181 aaggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtg 3921280  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    || ||||||  || | || ||||| |||||| |||||||||||    
T  3921281 cggggtccatatggccacatgtcagatttttgtgtgggtgtca 3921323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 2252085 - 2252226
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | |||||||    
T  2252085 aggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgc 2252184  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||||||  || | || ||||| |||||| |||||||||||    
T  2252185 ggggtccatatggccacatgtcagatttttgtgtgggtgtca 2252226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 171 - 312
Target Start/End: Original strand, 6259916 - 6260057
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| |||| |   ||||||| ||||||| |||||||||||||| ||||||  |||| ||||| |||| |||||||||| | ||||| |    
T  6259916 aaaggaaaatgttacatagatatcctttattcctatacacacttgtacatcccatacattagtgagagagaagaggagatgaaagagaaagtgtgcttct 6260015  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    | |||||||| ||||| | |||| | ||||||  ||||||||    
T  6260016 gtgaggtccatgtgaccatgtgttagatttttgcgtgggtgt 6260057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 20073433 - 20073574
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||  ||||||  ||||||||| ||||||| ||||| ||| |||| | ||||||||| ||||| ||||||||| ||||| | |||||||||    
T  20073433 aggaaaatgttagatagacattttttattctcatacacctttgtaaatctcatgaactaggaagagagaagaggagaggaaatagaaagtgtgcttgtgc 20073532  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
      ||||||||||   |||||  | ||||||||||| ||||||    
T  20073533 agggtccacgtggtcacgtgcaagatttttatgtgagtgtca 20073574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 229 - 314
Target Start/End: Original strand, 42414275 - 42414360
Alignment:
Q  229 ttaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||| ||||| || || ||||| ||| | |||||||||| ||||||| ||||||||||||| |||||| |||||||||||    
T  42414275 ttaggaagagagaagaggaaagaaaagataaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgtca 42414360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 260
Target Start/End: Complemental strand, 9603993 - 9603909
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaa 260  Q
    ||||||||||||||||||  |||||||| ||||||| |||||||||||| ||| || |||||| ||||| || | ||||||||||    
T  9603993 aaaatgttacgtagacaccatttattctcatacacctttgtacatcccaagcactaagaagagagaagacgaaatgaaagagaaa 9603909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 36875564 - 36875644
Alignment:
Q  208 cacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgacta 288  Q
    |||||||||||| |||||| ||||||||||| ||||| ||||  ||||||||| | |||||||||| | ||||||||||||    
T  36875564 cacccttgtacaccccatgtattaggaagagagaagaggagaaaaaagagaaagtgtgcttgtgcgggatccacgtgacta 36875644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 31132454 - 31132392
Alignment:
Q  246 gagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgg 308  Q
    ||||| ||||| ||| |||||||||||| ||||||||||||||| ||||| |||||| |||||    
T  31132454 gagagaaaagaaaaagtatgcttgtgcggggtccacgtgactacttgtcagatttttgtgtgg 31132392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 314
Target Start/End: Original strand, 39688814 - 39688955
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| ||||||| ||||| |   ||||||| ||||||| || ||| ||||||||||| |||||  ||| |||||||||| | | ||| |||    
T  39688814 aggaaaatgttacatagacaccttttaattgcatacacctttgtacaccctatgtattaggaagagagaagaaaagaagaaagagaaagtgtacttatgc 39688913  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||| ||  |||| || | ||| |||||| |||||||||||    
T  39688914 ggggttcatatgaccacatatcagatttttgtgtgggtgtca 39688955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 304
Target Start/End: Original strand, 41470425 - 41470464
Alignment:
Q  265 gcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  41470425 gcttgtgcggggtccacgtgactacgtgtcagatttttat 41470464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 174 - 312
Target Start/End: Original strand, 46033719 - 46033857
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| |||||||  |||||||| ||||||||||||||| ||||| ||||||||| || ||||| ||||| ||||||||||||||||||||||    
T  46033719 ggaaaatgttacatagacaccatttattctcatacacccttgtacaccccatacattaggaatagagaagaggagagaaaagagaaaatatgcttgtgcg 46033818  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
      || || ||||| |||||||| ||||||||||||||||    
T  46033819 gagttcatgtgaccacgtgtcagatttttatgtgggtgt 46033857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 4999436 - 4999572
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||  ||||||||| | || ||||||| |||    
T  4999436 aatgatacatagacaccttttattctcatacacccttgtacaccccatgcattaggaagagagaagaggagataaaagagaaagtgtgtttgtgcggggt 4999535  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||| ||| |||||| |||||||||||    
T  4999536 ccacgtgactacgtatcagatttttgtgtgggtgtca 4999572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Original strand, 8080305 - 8080441
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||| ||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  8080305 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcaataggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 8080404  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||||||| |||||||    
T  8080405 ccacgtgactacgtgtcagatttttatgtaggtgtca 8080441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 19330020 - 19329884
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| |||    
T  19330020 aatgatacatagacaccctttattcccatacacccttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggt 19329921  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||| ||||||||| |||||| |||||||||||    
T  19329920 ccacgtgattacgtgtcagatttttgtgtgggtgtca 19329884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 205 - 312
Target Start/End: Complemental strand, 38837368 - 38837261
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||||||||||| |||||| |    
T  38837368 atacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgt 38837269  T
Q  305 gtgggtgt 312  Q
    || |||||    
T  38837268 gtaggtgt 38837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 200 - 314
Target Start/End: Complemental strand, 35137689 - 35137575
Alignment:
Q  200 ttcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatt 299  Q
    |||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| | || ||||||| ||||||||||||||||||| | |||    
T  35137689 ttctcatacacccttgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgtttgtgcggggtccacgtgactacgtgttagatt 35137590  T
Q  300 tttatgtgggtgtca 314  Q
    ||| |||||||||||    
T  35137589 tttgtgtgggtgtca 35137575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 314
Target Start/End: Complemental strand, 21234584 - 21234443
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||| ||||||| ||||||||| ||||||| ||||||| ||||| |||||||||||| | | | |||||| |||||||||| |||||||||    
T  21234584 aggaaaatgttacatagacaccttttattctcatacaccattgtacaccccatacattaggaagagaggaaaggagaggtaagagaaaatgtgcttgtgc 21234485  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||| || ||| ||||||||||||||||| |||| ||||||    
T  21234484 ggggtacatgtggctacgtgtcaaatttttgtgtgagtgtca 21234443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 205 - 314
Target Start/End: Complemental strand, 38267191 - 38267082
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||| | |||||||||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||||||||||| |||||| |    
T  38267191 atacaccttcgtacatcccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgt 38267092  T
Q  305 gtgggtgtca 314  Q
    ||||||||||    
T  38267091 gtgggtgtca 38267082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 40957858 - 40957753
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||| | ||||||| || | ||||||||||||||||||| |||||| |    
T  40957858 atacacccttgtacaccccatgcattaggaagagagaagatgagagaaaagagaaagtgtgcttgtacgggatccacgtgactacgtgtcagatttttgt 40957759  T
Q  305 gtgggt 310  Q
    ||||||    
T  40957758 gtgggt 40957753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 187 - 314
Target Start/End: Original strand, 19436118 - 19436245
Alignment:
Q  187 tagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgac 286  Q
    |||||||  |||||||| ||||||||||||||| ||||||||||||||||||  ||||  |||| ||||||||| | ||||| |||| | ||||||||||    
T  19436118 tagacaccatttattctcatacacccttgtacaccccatgcattaggaagagaaaagagaagagaaaagagaaagtgtgcttatgcgggatccacgtgac 19436217  T
Q  287 tacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||| |||||| |||||||||||    
T  19436218 tacgtgtcagatttttgtgtgggtgtca 19436245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 197 - 308
Target Start/End: Original strand, 32951434 - 32951545
Alignment:
Q  197 ttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaa 296  Q
    ||||||| ||||||||||||||| |||||| ||||||||||| ||||| ||||| ||||||||| | |||||||||| ||||||||||||||||||| |     
T  32951434 ttattctcatacacccttgtacaccccatgtattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgttag 32951533  T
Q  297 atttttatgtgg 308  Q
    |||||| |||||    
T  32951534 atttttgtgtgg 32951545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 3784139 - 3784037
Alignment:
Q  212 cttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtg 311  Q
    |||||||| |||||||||||||||||| ||||| ||||| ||||||||| | |||||||||| | ||||||||||||||||||| |||||| ||||||||    
T  3784139 cttgtacaccccatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacgtgactacgtgtcagatttttgtgtgggtg 3784040  T
Q  312 tca 314  Q
    |||    
T  3784039 tca 3784037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 178 - 295
Target Start/End: Complemental strand, 11044356 - 11044239
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||| | ||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||| | | |||||||| |||    
T  11044356 aatgatacatagacactctttattttcatacacctttgtacacctcatgcattaggaagagagaagatgagaggaaagagaaagtgtacttgtgcggggt 11044257  T
Q  278 ccacgtgactacgtgtca 295  Q
    ||||||||||||||||||    
T  11044256 ccacgtgactacgtgtca 11044239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 312
Target Start/End: Complemental strand, 35523061 - 35522920
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| || ||||  |||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | |||||||    
T  35523061 aaaggaaaatgttacataaacaccatttattcccatacacccttgtacaccccatacattaggaagagagaagaagagagaaaagagaaagtgtgcttgt 35522962  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    ||| | ||||  || | |||||||| |||||| |||||||||    
T  35522961 gcgggatccatatggccacgtgtcagatttttgtgtgggtgt 35522920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 41423864 - 41423736
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| || ||||  |||||||| ||||||| ||||||| |||||||| ||||||||| ||||| |||| |||||||||||||||||||| ||    
T  41423864 ggaaaatgttacataaacaccctttattctcatacacctttgtacaccccatgcactaggaagagagaagaggagatgaaagagaaaatatgcttgtacg 41423765  T
Q  274 aggtccacgtgactacgtgtcaaattttt 302  Q
     | || ||||||| || ||||| ||||||    
T  41423764 ggatctacgtgaccacatgtcagattttt 41423736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 205 - 312
Target Start/End: Complemental strand, 3694518 - 3694411
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    |||||| |||||||| |||||||||| ||||||| ||||| ||||| ||||||||| | |||||||||| | ||||| ||||||||||||| |||||| |    
T  3694518 atacactcttgtacaccccatgcattgggaagagagaagaggagagaaaagagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgt 3694419  T
Q  305 gtgggtgt 312  Q
    ||||||||    
T  3694418 gtgggtgt 3694411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 314
Target Start/End: Complemental strand, 8238398 - 8238255
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| ||||| | ||||| |   ||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||| | | |||||    
T  8238398 aaaggaaaatgttacatagacgccttttaattgcatacacccttgtacaccccatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgt 8238299  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||||||  ||||||| ||||| |||||| |||||||||||    
T  8238298 gcggggtccatatgactacatgtcagatttttgtgtgggtgtca 8238255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 16374743 - 16374882
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 274  Q
    ||||||||||| |||||||  |||||||| ||||||| |||||||  |||| |||||||||||| ||| | |||| |||||||||  | |||||||| ||    
T  16374743 gaaaatgttacatagacaccctttattctcatacacctttgtacactccatacattaggaagagagaaaaagagatgaaagagaatgtgtgcttgtgtga 16374842  T
Q  275 ggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | |||||||||| |||||||| |||||| ||||| |||||    
T  16374843 gatccacgtgaccacgtgtcagatttttgtgtggatgtca 16374882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 7389548 - 7389431
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||||  ||||||||| ||||| |||||| ||||||||||| ||  | ||||| ||||||||| | |||||||||| |||||||||||||||||||||    
T  7389548 tttattcccatacaccct-gtacaccccatgtattaggaagagagagtaggagagaaaagagaaagtgtgcttgtgcggggtccacgtgactacgtgtca 7389450  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||| |||||||||||    
T  7389449 gatttttgtgtgggtgtca 7389431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 173 - 273
Target Start/End: Complemental strand, 31736060 - 31735960
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||||  |||| || ||||||||  ||||||||||||||| ||||| |||||||||||| ||||| ||||| ||||||||| | |||||||||    
T  31736060 aggaaaatgttagatagataccttttattcccatacacccttgtacaccccatacattaggaagagagaagaggagagaaaagagaaagtgtgcttgtgc 31735961  T
Q  273 g 273  Q
    |    
T  31735960 g 31735960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 36208306 - 36208215
Alignment:
Q  223 catgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||| ||||||||| ||||| ||||||||||||||||| |||||||||  |||||||||||| || |||||  ||||| |||||||||||    
T  36208306 catgcactaggaagagagaagaggagaggaaagagaaaatgtgcttgtgcagggtccacgtgaccacatgtcagctttttgtgtgggtgtca 36208215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 174 - 308
Target Start/End: Complemental strand, 26296826 - 26296692
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    ||||||||||||||||||||  | ||||   ||||||||||||||| | ||| ||||| |||||| ||||| ||||| |||||||||||  |||||||||    
T  26296826 ggaaaatgttacgtagacaccatatatttccatacacccttgtacacctcatacattaagaagagagaagaggagagaaaagagaaaatgcgcttgtgcg 26296727  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgg 308  Q
     ||||||  || | |||| ||| ||||||||||||    
T  26296726 gggtccatatggccacgtatcagatttttatgtgg 26296692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 172 - 310
Target Start/End: Original strand, 27744225 - 27744363
Alignment:
Q  172 aaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtg 271  Q
    |||||||||||||  || ||||  |||||||  ||| | |||||||||||||||||| ||||||||| ||||| ||||||| ||||||||| ||||| ||    
T  27744225 aaggaaaatgttatataaacaccatttattcccatatatccttgtacatcccatgcactaggaagagagaagaggagaggatagagaaaatgtgcttatg 27744324  T
Q  272 cgaggtccacgtgactacgtgtcaaatttttatgtgggt 310  Q
     | | |||||||| | || ||||| |||||| |||||||    
T  27744325 agggatccacgtggccacatgtcagatttttgtgtgggt 27744363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 314
Target Start/End: Original strand, 2318160 - 2318301
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattag-ga-agagggaagatgagaggaaagagaaaatatgcttgtgc 272  Q
    ||||||||||| |||||||| ||||||   ||||||| |||||||  ||||||||||| || |||| |||||||||| |||||||||| ||||||| ||     
T  2318160 gaaaatgttacatagacacactttatttccatacacctttgtacactccatgcattagagagagagagaagatgagatgaaagagaaagtatgcttatgt 2318259  T
Q  273 gaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
      |||||||||||| ||  |||| |||||| |||||||||||    
T  2318260 cgggtccacgtgaccacacgtcagatttttgtgtgggtgtca 2318301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 38044379 - 38044239
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| |||||| |||||||||||  ||||  ||| |||||||||| | | ||||||||    
T  38044379 ggaaaatgttacatagacaccttttaattgcatacacccttgtacaccccatgtattaggaagagaaaagagaagaagaaagagaaagtgtacttgtgcg 38044280  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||  || |||| ||||| |||||| ||||| |||||    
T  38044279 gggtccatatggctacatgtcagatttttgtgtggatgtca 38044239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 36362192 - 36362068
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||| |||||||||||||||||||||| |||||||||||             ||||||||| | |||||||| | |||    
T  36362192 aatgatacatagacaccctttattctcatacacccttgtacatcccatgtattaggaagaga------------aaagagaaagtgtgcttgtgtggggt 36362105  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||||||||||||||| |||||| |||||||||||    
T  36362104 ccacgtgactacgtgtcagatttttgtgtgggtgtca 36362068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 314
Target Start/End: Complemental strand, 22343543 - 22343403
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| ||||||| ||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| |||||||||| | | ||||||||    
T  22343543 ggaaaatgttacatagacaccttttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcg 22343444  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||  ||   || ||||| |||||| |||||||||||    
T  22343443 gggtccatatggtcacatgtcagatttttgtgtgggtgtca 22343403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 174 - 314
Target Start/End: Original strand, 35468773 - 35468913
Alignment:
Q  174 ggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcg 273  Q
    |||||||||||| || |||| ||||||||| ||||| |||| |||||| |||| | ||||||||| ||||| || |||||||||||| | || ||||||     
T  35468773 ggaaaatgttacatatacaccttttattctcatacatccttatacatctcatgaactaggaagagagaagaggataggaaagagaaagtgtgtttgtgca 35468872  T
Q  274 aggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
     ||||||| ||   || | | | ||||||||||||||||||    
T  35468873 gggtccacatggtcacatattagatttttatgtgggtgtca 35468913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 36361904 - 36361971
Alignment:
Q  247 agaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||| ||||||||| | |||||||| | ||||||||||||||||||||| |||||| |||||||||||    
T  36361904 agagaaaagagaaagtgtgcttgtgtggggtccacgtgactacgtgtcagatttttgtgtgggtgtca 36361971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 41915921 - 41915783
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 275  Q
    |||||||||| ||||||| ||||| |   ||||||||||||||| |||||  ||||||||||| |||||  ||| |||||||||| | | |||||||| |    
T  41915921 aaaatgttacatagacaccttttaattgcatacacccttgtacaccccatatattaggaagagagaagagaagaagaaagagaaagtgtacttgtgcggg 41915822  T
Q  276 gtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    |||||  || | || ||||| |||||| ||| |||||||    
T  41915821 gtccatatggccacatgtcagatttttgtgtaggtgtca 41915783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 314
Target Start/End: Complemental strand, 3434730 - 3434604
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||| ||||||||| |||||||||||||||||| |||          |||||||| | |||||||||| | |    
T  3434730 aatgatacatagacaccctttattcccatacagccttgtacaccccatgcattaggaagagagaa----------aagagaaagtgtgcttgtgcgggat 3434641  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||||||||||||||||||  ||||| |||||||||||    
T  3434640 ccacgtgactacgtgtcagttttttgtgtgggtgtca 3434604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 46374741 - 46374806
Alignment:
Q  173 aggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 238  Q
    ||||||||||||| |||||||  |||||||  ||||||||||||||| ||||| ||||||||||||    
T  46374741 aggaaaatgttacatagacaccatttattcccatacacccttgtacaccccatacattaggaagag 46374806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 307
Target Start/End: Complemental strand, 7728086 - 7727955
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 275  Q
    |||||||||| ||||||| ||||| |   ||||| ||||||||| |||||  ||||||||||| |||||  ||| |||| ||||| | | |||||||| |    
T  7728086 aaaatgttacatagacaccttttaattgcatacatccttgtacaccccatatattaggaagagagaagagaagaagaaacagaaagtgtacttgtgcggg 7727987  T
Q  276 gtccacgtgactacgtgtcaaatttttatgtg 307  Q
    |||||  |||| || ||||| |||||||||||    
T  7727986 gtccatatgaccacatgtcagatttttatgtg 7727955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 32564341 - 32564484
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||| ||||||| |||||| |||||| |   ||||||||||||||| | |||| ||||||||||| |||||  ||| |||||||||| | |  ||||    
T  32564341 aaaggaagatgttacatagacatattttaattgcatacacccttgtacacctcatgtattaggaagagagaagagaagaagaaagagaaagtgtatttgt 32564440  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||||||  |  | || ||||| |||||| |||||||||||    
T  32564441 gcggggtccatatagccacatgtcagatttttgtgtgggtgtca 32564484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 313
Target Start/End: Complemental strand, 32046018 - 32045880
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 274  Q
    ||||||||||| ||||||   ||||||   ||||||||||||||||| |||  ||| | ||||| |||||||||| |||| ||||| |||||| ||  |     
T  32046018 gaaaatgttacatagacattctttatttacatacacccttgtacatctcatatatttgaaagagagaagatgagatgaaaaagaaagtatgctagtatgg 32045919  T
Q  275 ggtccacgtgactacgtgtcaaatttttatgtgggtgtc 313  Q
    |||| |  ||  ||||||||| |||||||||||||||||    
T  32045918 ggtctatatggttacgtgtcagatttttatgtgggtgtc 32045880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 36361847 - 36361907
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagag 238  Q
    |||| ||| |||||||  |||||||| |||||||||||||||| ||||| |||||||||||    
T  36361847 aatgatacatagacaccctttattctcatacacccttgtacattccatgtattaggaagag 36361907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 40846028 - 40846171
Alignment:
Q  171 aaaggaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgt 270  Q
    ||||||||||||||| |||| || ||||| |   ||||||||||||||||| |||   |||||||||| |||||  ||| |||||||||| | |  ||||    
T  40846028 aaaggaaaatgttacatagataccttttaattgcatacacccttgtacatctcatcttttaggaagagagaagagaagaagaaagagaaagtgtatttgt 40846127  T
Q  271 gcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    ||| ||||||  | ||||| ||| | |||||| ||||| |||||    
T  40846128 gcggggtccatataactacatgttagatttttgtgtggatgtca 40846171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 314
Target Start/End: Complemental strand, 18207339 - 18207222
Alignment:
Q  196 tttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtca 295  Q
    |||||| | |||||||||||||||  | || || ||||||||| ||||| |||| |||||||||| | |||||||| | ||| |||||| | |||||| |    
T  18207339 tttattatcatacacccttgtacactctatccactaggaagagagaagaggagatgaaagagaaagtgtgcttgtgtggggttcacgtg-ccacgtgtta 18207241  T
Q  296 aatttttatgtgggtgtca 314  Q
     |||||| | |||||||||    
T  18207240 gatttttgtatgggtgtca 18207222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 302
Target Start/End: Original strand, 39255844 - 39255969
Alignment:
Q  176 aaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgag 275  Q
    |||||||||| |||||||  |||||| | |||||||||||||||| | || ||   ||||||| ||||| |||| |||||||||| | | |||||| |      
T  39255844 aaaatgttacatagacaccctttattatcatacacccttgtacattctatccaccgggaagagagaagaggagatgaaagagaaagtgttcttgtgtgga 39255943  T
Q  276 gtccacgtgactacgtgtcaaattttt 302  Q
    ||||||||| | |||||||| ||||||    
T  39255944 gtccacgtg-ccacgtgtcagattttt 39255969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 205 - 314
Target Start/End: Original strand, 10058 - 10167
Alignment:
Q  205 atacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttat 304  Q
    ||||||||||||||| || ||||||||||||||| ||||| ||||| ||||||||| | ||||||| || ||||||||||||||||||||| ||||||||    
T  10058 atacacccttgtacaccctatgcattaggaagagagaagaggagagaaaagagaaagtgtgcttgtacgcggtccacgtgactacgtgtcagatttttat 10157  T
Q  305 gtgggtgtca 314  Q
    |||| |||||    
T  10158 gtggatgtca 10167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 178 - 312
Target Start/End: Complemental strand, 4207 - 4073
Alignment:
Q  178 aatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcgaggt 277  Q
    |||| ||| |||||||  |||||||  ||||||||||||||| |||||||||||||||||| |||||  |||| ||||||||| | ||||| |||| | |    
T  4207 aatgatacatagacaccatttattcccatacacccttgtacaccccatgcattaggaagagagaagagaagagaaaagagaaagtgtgcttatgcgggat 4108  T
Q  278 ccacgtgactacgtgtcaaatttttatgtgggtgt 312  Q
    |||||| ||||||||||| |||||| |||||||||    
T  4107 ccacgtaactacgtgtcagatttttgtgtgggtgt 4073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 848 - 981
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 274  Q
    ||||||||||| || ||||  |||||||  |||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||| | ||||||||||     
T  848 gaaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcgg 947  T
Q  275 ggtccacgtgactacgtgtcaaatttttatgtgg 308  Q
    | | |||||||||||||||||  ||||| |||||    
T  948 gattcacgtgactacgtgtcagttttttgtgtgg 981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 308
Target Start/End: Original strand, 848 - 981
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 274  Q
    ||||||||||| || ||||  |||||||  |||||| |||||||| |||||||| ||||||||| ||||| ||||||||||||||| | ||||||||||     
T  848 gaaaatgttacataaacaccctttattcccatacactcttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcgg 947  T
Q  275 ggtccacgtgactacgtgtcaaatttttatgtgg 308  Q
    | | |||||||||||||||||  ||||| |||||    
T  948 gattcacgtgactacgtgtcagttttttgtgtgg 981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 175 - 314
Target Start/End: Complemental strand, 152679 - 152540
Alignment:
Q  175 gaaaatgttacgtagacacattttattcttatacacccttgtacatcccatgcattaggaagagggaagatgagaggaaagagaaaatatgcttgtgcga 274  Q
    ||||||||||| ||||||| ||||| |   |||||||||||||||||||||| ||||| ||||| |||||  ||| |||||||||| | |  |||||||     
T  152679 gaaaatgttacatagacaccttttaattgcatacacccttgtacatcccatgtattagaaagagagaagagaagaagaaagagaaagtgtatttgtgcgg 152580  T
Q  275 ggtccacgtgactacgtgtcaaatttttatgtgggtgtca 314  Q
    | ||||  |||| || ||||| |||||| |||||||||||    
T  152579 gatccatatgaccacatgtcagatttttgtgtgggtgtca 152540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 313
Target Start/End: Complemental strand, 17163 - 17097
Alignment:
Q  247 agaggaaagagaaaatatgcttgtgcgaggtccacgtgactacgtgtcaaatttttatgtgggtgtc 313  Q
    |||||||||||||||| |||||||||| |||||| ||||| || ||||| |||||| ||||| ||||    
T  17163 agaggaaagagaaaatgtgcttgtgcggggtccatgtgaccacatgtcagatttttgtgtggatgtc 17097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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