View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12031_low_1 (Length: 631)
Name: NF12031_low_1
Description: NF12031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12031_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 591; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 20 - 626
Target Start/End: Complemental strand, 47262566 - 47261960
Alignment:
| Q |
20 |
ccaagtccttctcccaactctcaaaacccttcgttcattccctctccaagttaaaaaacactgctacaatattcctgtgtatcgcggtgcaaaatatatg |
119 |
Q |
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| T |
47262566 |
ccaagtccttctcccaactctcaaaacccttcgttcattccctctccaagttaaaaaacactgctacaatattcctgtgtatcgcggtgcaaaatatatg |
47262467 |
T |
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| Q |
120 |
atacgtactacttatttctacggtggagccaacggtgttgatcatcttacgccgccggtgtttgatcagatcgttgatggaacgttatggagtgtggtga |
219 |
Q |
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| T |
47262466 |
atacgtactacttatttctacggtggagtcaacggtgttgatcatcctacgccgccggtgtttgatcagatcattgatggaacgttatggagtgtggtga |
47262367 |
T |
|
| Q |
220 |
atactacggtggattatgctaatggaaactcgagtttttatgaaggggtatttttggctgtggggaagtttatgagtttttgtatcgggtcgaatagtta |
319 |
Q |
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| T |
47262366 |
atactacggtggattatgctaatggaaactcgagtttttatgaaggggtatttttggctgtggggaagtttatgagtttttgtatcgggtcgaatagtta |
47262267 |
T |
|
| Q |
320 |
tacggattctgacccgtttgtttctgctttggagtttttgattcttggagattccttgtataataccactgattttaacaactttgctattggtttggtt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262266 |
tacggattctgacccgtttgtttctgctttggagtttttgattcttggagattccttgtataataccactgattttaacaactttgctattggtttggtt |
47262167 |
T |
|
| Q |
420 |
gctagaaatagctttggttactccggaccaagcataaggttagttggacttggacactgttttcttcaacttttgtcaagttttgatgatattaatcttt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262166 |
gctagaaatagctttggttactccggaccaagcataaggttagttggacttggacactgttttcttcaacttttgtcaagttttgatgatattaatcttt |
47262067 |
T |
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| Q |
520 |
atgtggttggtacttggtagatatatagaatatagatcattatcatttagttgtggttatactgtatctgtaaaatttcctaagtttttgttgtcctatc |
619 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262066 |
atttggttggtacttggtagatatatagaatatagatcattatcatttagttgtggttatactgtatctgtaaaatttcctaagtttttgttgtcctatc |
47261967 |
T |
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| Q |
620 |
ctatgct |
626 |
Q |
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||||||| |
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| T |
47261966 |
ctatgct |
47261960 |
T |
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