View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12031_low_11 (Length: 252)
Name: NF12031_low_11
Description: NF12031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12031_low_11 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 252
Target Start/End: Complemental strand, 28593969 - 28593732
Alignment:
| Q |
15 |
atgaaatcataacaaacatgacacgaaactttaaggtgcatcatcttctagttaactatttcgacgctagcttagaagcaagtcgttgttgtgacacaat |
114 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28593969 |
atgaaatcataacaaacatgagacgaaactttaaggtgcatgatcttctagttaactatttcgatgctagcttagaagcaagtcgttgttgtgacacaat |
28593870 |
T |
|
| Q |
115 |
ccttgaaggaattcactcaacaagaatttcttatacaagaatcacacaagttgttaagttaagcaaaagggtgctaaatgaacaaacaaagaaagatatc |
214 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28593869 |
ccttgaaggaatccactcaacaagaatttcttatacaagaatcacacgagttgttaagttaagcaaaagggtgctaaatgaacaaacaaagaaagatatc |
28593770 |
T |
|
| Q |
215 |
tatagagagcttgcttcattttcatcaaaagtacaaaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28593769 |
tatagagagcttgcttcattttcatcaaaagtacaaaa |
28593732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 8357618 - 8357853
Alignment:
| Q |
17 |
gaaatcataacaaacatgacacgaaactttaaggtgcatcatcttctagttaactatttcgacgctagcttagaagcaagtcgttgttgtgacacaatcc |
116 |
Q |
| |
|
||||| |||||||||||||||| ||| |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8357618 |
gaaataataacaaacatgacacaaaattttaaggtgcatcatcttctagttgactatttcgaagctagcttagaagcatgtcgttgttgtgacacaatcc |
8357717 |
T |
|
| Q |
117 |
ttgaaggaattcactcaacaagaatttcttatacaagaatcacacaagttgttaagttaagcaaaagggtgctaaatgaacaaacaaagaaagatatcta |
216 |
Q |
| |
|
|||||||||| ||| |||||||| ||||||||||||||| | || | ||||||||||||||||||||||| | ||||||| |||||||||||||||||| |
|
|
| T |
8357718 |
ttgaaggaatccacgcaacaagactttcttatacaagaactaaacgatttgttaagttaagcaaaagggtgattaatgaaccaacaaagaaagatatcta |
8357817 |
T |
|
| Q |
217 |
tagagagcttgcttcattttcatcaaaagtacaaaa |
252 |
Q |
| |
|
|||||| ||||||| |||| |||||||| ||||||| |
|
|
| T |
8357818 |
tagagaacttgctttatttccatcaaaattacaaaa |
8357853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 123
Target Start/End: Original strand, 53447179 - 53447259
Alignment:
| Q |
43 |
ctttaaggtgcatcatcttctagttaactatttcgacgctagcttagaagcaagtcgttgttgtgacacaatccttgaagg |
123 |
Q |
| |
|
|||||||||||||||||||||||| |||| || || || |||||||||||| || |||||| |||| ||||||| |||| |
|
|
| T |
53447179 |
ctttaaggtgcatcatcttctagtggactactttgaagccagcttagaagcatatctttgttgcgacaaaatccttcaagg |
53447259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University