View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12031_low_12 (Length: 245)
Name: NF12031_low_12
Description: NF12031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12031_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28593651 - 28593427
Alignment:
| Q |
1 |
caaagagaaagaaaattcaaagaagattagcattgattagggtttgcaagaaagttggaggaattgctcttgttacatcacatggtgctattcttattgc |
100 |
Q |
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| T |
28593651 |
caaagagaaagaaaattcaaagaagattagcattgattagggtttgcaagaaagttggaggaattgctcttgttacatcacatggtgccattcttattgc |
28593552 |
T |
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| Q |
101 |
tttattagtggtttcttttcatagtgtagtagggttagtggctgcaccaagtattgtaggtagtttagttggtttgttcataaagaaaatcaaaattagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28593551 |
tttattagtggtttcttttcatagtgtagtagggttagtggctgcaccaagtattgtaggtagtttggttggtttgttcataaagaaaatcaaaattagg |
28593452 |
T |
|
| Q |
201 |
ttaagaagaagttcttattgtgaaa |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
28593451 |
ttaagaagaagttcttattgtgaaa |
28593427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 8357934 - 8358128
Alignment:
| Q |
1 |
caaagagaaagaaaattcaaagaagattagcattgattagggtttgcaagaaagttggaggaattgctcttgttacatcacatggtgctattcttattgc |
100 |
Q |
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||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8357934 |
caaagagaaggaaaattcaaagaagattaacattgattagtgtttgcaagaaagttggaggaattgctcttgttacatcacatgctgctattcttattgc |
8358033 |
T |
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| Q |
101 |
tttattagtggtttcttttcatagtgtagtagggttagtggctgcaccaagtattgtaggtagtttagttggtttgttcataaagaaaatcaaaa |
195 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||| |
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| T |
8358034 |
tttattagtggtttcttttcatagtgttgttgggttagtggctgcaccaagtattgtaggtggtttagttggtttgttcataaagagaataaaaa |
8358128 |
T |
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