View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12031_low_14 (Length: 208)
Name: NF12031_low_14
Description: NF12031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12031_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31543248 - 31543063
Alignment:
| Q |
1 |
tcaatgccatgcctacctttttattgatgagtggaggaactccagtggagaaagctgttggtgcaaatcctgatgaaattaggaaaaggatggaccattt |
100 |
Q |
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| T |
31543248 |
tcaatgccatgcctacctttttattgatgagtggaggaactccagtggagaaagctgttggtgcaaatcctgatgaaattaggaaaaggatggaccattt |
31543149 |
T |
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| Q |
101 |
tattaaccaaactcattcctccaaatcactctgatgcatgatgagcacattgaacagagtttgactaagatgtaaataagatctac |
186 |
Q |
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| T |
31543148 |
tattaaccaaactcattcctccaaatcactctgatgcatgatgagcacattgaacagagtttgactaagatgtaaataagatctac |
31543063 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 104
Target Start/End: Original strand, 34658927 - 34659019
Alignment:
| Q |
12 |
cctacctttttattgatgagtggaggaactccagtggagaaagctgttggtgcaaatcctgatgaaattaggaaaaggatggaccattttatt |
104 |
Q |
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| T |
34658927 |
cctacctttctatttttgaatggtggaactcttgtggacaaaattgtgggtgcaaatcctgatgaaataaggaaaagggtagatcattttatt |
34659019 |
T |
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