View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12031_low_2 (Length: 505)

Name: NF12031_low_2
Description: NF12031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12031_low_2
NF12031_low_2
[»] chr8 (39 HSPs)
chr8 (6-164)||(29022820-29022978)
chr8 (298-498)||(29023108-29023309)
chr8 (389-484)||(44926802-44926897)
chr8 (394-498)||(42148971-42149075)
chr8 (389-492)||(33627079-33627182)
chr8 (403-484)||(25698012-25698093)
chr8 (404-494)||(3097249-3097339)
chr8 (404-498)||(28425511-28425605)
chr8 (389-498)||(4941820-4941929)
chr8 (396-493)||(41289102-41289199)
chr8 (401-493)||(6399152-6399244)
chr8 (404-484)||(36114093-36114173)
chr8 (401-493)||(43550864-43550956)
chr8 (404-475)||(27649722-27649793)
chr8 (402-484)||(8124945-8125027)
chr8 (404-451)||(38152260-38152307)
chr8 (407-493)||(3467512-3467598)
chr8 (401-451)||(40742379-40742429)
chr8 (401-490)||(26125545-26125634)
chr8 (389-493)||(40742085-40742189)
chr8 (407-451)||(41981136-41981180)
chr8 (394-493)||(440233-440332)
chr8 (394-493)||(22936837-22936936)
chr8 (415-498)||(42143403-42143486)
chr8 (414-484)||(24897640-24897710)
chr8 (402-440)||(26243065-26243103)
chr8 (404-494)||(34342896-34342985)
chr8 (400-441)||(3619164-3619205)
chr8 (400-437)||(37458403-37458440)
chr8 (407-441)||(24297687-24297721)
chr8 (400-442)||(26575807-26575849)
chr8 (407-441)||(41408169-41408203)
chr8 (400-441)||(2026093-2026134)
chr8 (400-441)||(17073707-17073748)
chr8 (400-441)||(17574522-17574563)
chr8 (400-441)||(35801788-35801829)
chr8 (406-490)||(11126494-11126578)
chr8 (401-441)||(41891915-41891955)
chr8 (389-465)||(45147322-45147398)
[»] chr5 (41 HSPs)
chr5 (298-498)||(41740629-41740829)
chr5 (6-159)||(41740967-41741120)
chr5 (389-484)||(32454504-32454599)
chr5 (389-493)||(40885177-40885282)
chr5 (389-491)||(40495401-40495502)
chr5 (389-493)||(3667821-3667925)
chr5 (394-493)||(22482161-22482260)
chr5 (413-498)||(39988003-39988088)
chr5 (404-484)||(13253132-13253212)
chr5 (389-493)||(35760156-35760260)
chr5 (407-498)||(7385968-7386059)
chr5 (407-491)||(8049094-8049178)
chr5 (389-485)||(16158514-16158610)
chr5 (405-484)||(2430346-2430425)
chr5 (401-493)||(41834871-41834963)
chr5 (401-451)||(3060306-3060355)
chr5 (404-494)||(10058056-10058146)
chr5 (401-447)||(16843517-16843563)
chr5 (394-451)||(7714912-7714969)
chr5 (401-449)||(33953986-33954034)
chr5 (401-491)||(9275527-9275617)
chr5 (424-490)||(28869547-28869613)
chr5 (394-484)||(40791119-40791209)
chr5 (394-484)||(42146280-42146370)
chr5 (396-441)||(3747683-3747728)
chr5 (394-451)||(24045803-24045860)
chr5 (394-446)||(27021100-27021153)
chr5 (404-445)||(32030698-32030739)
chr5 (400-441)||(40979996-40980037)
chr5 (401-493)||(4292128-4292220)
chr5 (400-442)||(33082423-33082465)
chr5 (408-493)||(5710427-5710511)
chr5 (400-441)||(7071503-7071544)
chr5 (400-441)||(8957979-8958020)
chr5 (400-441)||(11017912-11017953)
chr5 (400-441)||(20069163-20069204)
chr5 (400-441)||(27738036-27738077)
chr5 (400-441)||(31906018-31906059)
chr5 (400-441)||(33386955-33386996)
chr5 (400-444)||(25256313-25256357)
chr5 (400-444)||(25320102-25320146)
[»] chr2 (38 HSPs)
chr2 (6-164)||(23357835-23357993)
chr2 (298-498)||(23358127-23358329)
chr2 (389-484)||(7472724-7472819)
chr2 (381-492)||(44619104-44619215)
chr2 (381-498)||(2215208-2215323)
chr2 (388-493)||(9988543-9988648)
chr2 (383-493)||(28127329-28127439)
chr2 (389-493)||(2213468-2213572)
chr2 (389-493)||(25940283-25940387)
chr2 (404-484)||(39141520-39141600)
chr2 (401-484)||(5916292-5916375)
chr2 (401-484)||(36312251-36312334)
chr2 (394-451)||(8170280-8170337)
chr2 (394-493)||(7296122-7296221)
chr2 (401-484)||(14821137-14821220)
chr2 (408-493)||(1945081-1945166)
chr2 (394-449)||(7295432-7295487)
chr2 (394-493)||(28261261-28261360)
chr2 (401-472)||(31562747-31562818)
chr2 (400-447)||(42516063-42516110)
chr2 (402-443)||(18511077-18511118)
chr2 (394-451)||(36548167-36548224)
chr2 (402-464)||(32501961-32502023)
chr2 (388-493)||(26207971-26208076)
chr2 (401-441)||(3853874-3853914)
chr2 (400-451)||(2234900-2234950)
chr2 (403-442)||(15283350-15283389)
chr2 (400-439)||(37640236-37640275)
chr2 (428-475)||(42089592-42089639)
chr2 (407-493)||(27911386-27911472)
chr2 (400-441)||(7474113-7474154)
chr2 (400-441)||(17481374-17481415)
chr2 (401-493)||(28641616-28641708)
chr2 (400-441)||(43341747-43341788)
chr2 (406-491)||(43436325-43436410)
chr2 (400-441)||(43695614-43695655)
chr2 (407-451)||(16467066-16467110)
chr2 (389-441)||(25747975-25748027)
[»] chr1 (37 HSPs)
chr1 (9-157)||(292096-292244)
chr1 (298-498)||(291757-291949)
chr1 (389-491)||(12468190-12468291)
chr1 (401-493)||(42850264-42850356)
chr1 (389-484)||(43728931-43729026)
chr1 (404-484)||(12247412-12247492)
chr1 (394-493)||(35569247-35569346)
chr1 (388-493)||(31223350-31223455)
chr1 (404-493)||(35536064-35536152)
chr1 (394-493)||(20800322-20800421)
chr1 (401-451)||(6464597-6464647)
chr1 (401-451)||(45710038-45710088)
chr1 (388-493)||(48510884-48510989)
chr1 (400-451)||(10470578-10470629)
chr1 (402-484)||(6166100-6166182)
chr1 (401-451)||(31933716-31933766)
chr1 (404-498)||(40229510-40229604)
chr1 (404-493)||(1199819-1199908)
chr1 (401-494)||(36205180-36205273)
chr1 (401-493)||(4369847-4369939)
chr1 (402-493)||(13055988-13056078)
chr1 (403-446)||(13931614-13931657)
chr1 (403-464)||(5410631-5410692)
chr1 (401-493)||(7826399-7826491)
chr1 (389-493)||(47123363-47123467)
chr1 (401-493)||(50977385-50977476)
chr1 (405-484)||(25230000-25230079)
chr1 (402-464)||(11023403-11023465)
chr1 (406-491)||(26058235-26058320)
chr1 (400-441)||(46033210-46033251)
chr1 (401-441)||(11051407-11051447)
chr1 (402-441)||(15884216-15884255)
chr1 (407-444)||(36118120-36118157)
chr1 (400-441)||(41512729-41512770)
chr1 (400-441)||(42137170-42137211)
chr1 (427-491)||(27801699-27801763)
chr1 (401-445)||(40821814-40821858)
[»] chr4 (51 HSPs)
chr4 (8-164)||(28987668-28987827)
chr4 (389-484)||(43781571-43781666)
chr4 (388-493)||(51922877-51922982)
chr4 (388-493)||(13183094-13183199)
chr4 (394-484)||(30842075-30842165)
chr4 (394-484)||(48407750-48407840)
chr4 (388-493)||(26651892-26651997)
chr4 (389-493)||(29149351-29149455)
chr4 (389-493)||(49136460-49136564)
chr4 (393-451)||(9893653-9893711)
chr4 (388-493)||(48550471-48550576)
chr4 (389-493)||(15603298-15603402)
chr4 (401-493)||(16566255-16566347)
chr4 (401-493)||(39636735-39636827)
chr4 (408-493)||(6138664-6138749)
chr4 (401-449)||(14072453-14072501)
chr4 (389-493)||(19592275-19592379)
chr4 (401-493)||(46830113-46830205)
chr4 (394-493)||(2175191-2175290)
chr4 (394-493)||(6505144-6505243)
chr4 (394-451)||(9889420-9889477)
chr4 (402-451)||(28986972-28987021)
chr4 (401-450)||(32238145-32238194)
chr4 (388-493)||(42944942-42945047)
chr4 (389-494)||(56241878-56241983)
chr4 (394-494)||(14564189-14564289)
chr4 (399-491)||(38693996-38694088)
chr4 (401-449)||(54152995-54153043)
chr4 (407-485)||(43772175-43772253)
chr4 (401-491)||(54735696-54735786)
chr4 (404-493)||(48908228-48908315)
chr4 (401-493)||(4954095-4954187)
chr4 (394-484)||(26426167-26426257)
chr4 (401-491)||(30887199-30887289)
chr4 (400-441)||(45106357-45106398)
chr4 (401-446)||(54655200-54655245)
chr4 (401-493)||(14054801-14054893)
chr4 (389-493)||(54150464-54150568)
chr4 (403-451)||(55638873-55638921)
chr4 (406-441)||(5025484-5025519)
chr4 (402-493)||(13167476-13167567)
chr4 (401-464)||(31520443-31520506)
chr4 (407-485)||(49519686-49519764)
chr4 (400-441)||(16202614-16202655)
chr4 (400-441)||(22605838-22605879)
chr4 (400-441)||(28963339-28963380)
chr4 (400-441)||(30417876-30417917)
chr4 (400-441)||(39733396-39733437)
chr4 (406-491)||(48550172-48550257)
chr4 (404-441)||(50523350-50523387)
chr4 (401-445)||(15619567-15619610)
[»] chr7 (37 HSPs)
chr7 (389-484)||(9456079-9456174)
chr7 (389-494)||(43737969-43738074)
chr7 (401-484)||(48134566-48134649)
chr7 (388-493)||(37562543-37562648)
chr7 (401-493)||(3622491-3622583)
chr7 (394-451)||(47301630-47301687)
chr7 (404-484)||(34010329-34010409)
chr7 (403-494)||(3342778-3342869)
chr7 (404-498)||(39391163-39391257)
chr7 (404-493)||(34366013-34366101)
chr7 (394-493)||(47217572-47217671)
chr7 (404-493)||(19095926-19096013)
chr7 (401-493)||(38230054-38230146)
chr7 (405-493)||(44967430-44967518)
chr7 (401-464)||(12632143-12632206)
chr7 (401-493)||(3375476-3375568)
chr7 (407-451)||(3750678-3750722)
chr7 (401-493)||(32205913-32206003)
chr7 (401-493)||(37639416-37639508)
chr7 (402-445)||(10372037-10372080)
chr7 (407-493)||(48459702-48459788)
chr7 (400-441)||(4035919-4035960)
chr7 (406-491)||(32186931-32187016)
chr7 (404-464)||(34011021-34011082)
chr7 (400-441)||(40903250-40903291)
chr7 (406-491)||(41715648-41715733)
chr7 (413-493)||(42904551-42904631)
chr7 (401-493)||(47021905-47021997)
chr7 (389-440)||(37886854-37886905)
chr7 (407-446)||(39977544-39977583)
chr7 (407-444)||(386560-386597)
chr7 (400-441)||(26826952-26826993)
chr7 (400-441)||(41065340-41065381)
chr7 (391-448)||(43631771-43631828)
chr7 (388-462)||(12964412-12964483)
chr7 (407-491)||(42740384-42740468)
chr7 (389-441)||(42752274-42752326)
[»] chr6 (13 HSPs)
chr6 (389-484)||(13739159-13739254)
chr6 (389-484)||(13744659-13744754)
chr6 (389-493)||(29409295-29409399)
chr6 (404-484)||(31132432-31132512)
chr6 (388-493)||(16442394-16442499)
chr6 (401-493)||(16548104-16548196)
chr6 (401-494)||(33899048-33899141)
chr6 (401-484)||(6208115-6208198)
chr6 (407-493)||(10826062-10826148)
chr6 (401-445)||(17830090-17830134)
chr6 (396-492)||(699518-699613)
chr6 (400-441)||(31745486-31745527)
chr6 (401-441)||(2935695-2935735)
[»] scaffold0369 (1 HSPs)
scaffold0369 (389-493)||(8402-8506)
[»] chr3 (44 HSPs)
chr3 (389-491)||(53179802-53179903)
chr3 (401-491)||(3348208-3348298)
chr3 (388-494)||(10334090-10334196)
chr3 (394-484)||(42318288-42318378)
chr3 (394-484)||(38125494-38125584)
chr3 (401-493)||(20813111-20813203)
chr3 (390-493)||(31618931-31619034)
chr3 (401-491)||(10853313-10853403)
chr3 (388-493)||(38172351-38172456)
chr3 (401-494)||(44224727-44224820)
chr3 (389-493)||(26519617-26519721)
chr3 (388-447)||(16246184-16246243)
chr3 (394-451)||(48189527-48189584)
chr3 (402-493)||(15511420-15511510)
chr3 (394-445)||(23496282-23496333)
chr3 (401-451)||(35425299-35425349)
chr3 (402-484)||(53074869-53074951)
chr3 (404-493)||(23207112-23207199)
chr3 (401-494)||(35930703-35930796)
chr3 (405-484)||(8424782-8424861)
chr3 (401-451)||(30811617-30811667)
chr3 (403-493)||(31084175-31084264)
chr3 (401-451)||(44939500-44939550)
chr3 (401-493)||(38340771-38340862)
chr3 (389-441)||(50664712-50664764)
chr3 (401-493)||(52966853-52966945)
chr3 (401-464)||(22736946-22737009)
chr3 (389-479)||(21224943-21225033)
chr3 (400-441)||(30811288-30811329)
chr3 (409-446)||(55087593-55087630)
chr3 (404-491)||(32357479-32357566)
chr3 (401-451)||(14959684-14959734)
chr3 (400-442)||(33329436-33329478)
chr3 (389-491)||(37117556-37117658)
chr3 (407-441)||(37698485-37698519)
chr3 (400-442)||(44610311-44610352)
chr3 (400-441)||(11264277-11264318)
chr3 (400-441)||(28884258-28884299)
chr3 (400-441)||(39252061-39252102)
chr3 (400-441)||(42074914-42074955)
chr3 (400-441)||(45423864-45423905)
chr3 (400-441)||(48253974-48254015)
chr3 (400-441)||(51230284-51230325)
chr3 (401-441)||(53078323-53078363)
[»] scaffold0983 (1 HSPs)
scaffold0983 (406-498)||(2307-2399)
[»] scaffold0007 (1 HSPs)
scaffold0007 (401-484)||(29175-29258)
[»] scaffold0381 (1 HSPs)
scaffold0381 (394-451)||(9069-9126)
[»] scaffold0005 (1 HSPs)
scaffold0005 (394-494)||(253086-253186)
[»] scaffold0217 (1 HSPs)
scaffold0217 (403-494)||(2070-2161)
[»] scaffold0041 (1 HSPs)
scaffold0041 (400-441)||(46727-46768)
[»] scaffold0394 (1 HSPs)
scaffold0394 (401-445)||(5918-5967)
[»] scaffold0184 (1 HSPs)
scaffold0184 (400-441)||(9254-9295)
[»] scaffold0097 (1 HSPs)
scaffold0097 (400-441)||(32541-32582)
[»] scaffold0003 (1 HSPs)
scaffold0003 (400-441)||(301745-301786)


Alignment Details
Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 29022820 - 29022978
Alignment:
Q  6 aagaagctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagaggaagaaattgcagctgagtattgagagatgagga 105  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  29022820 aagaagctttcagtttattcaataaggatggtagaaagaatggaatgaaattattgcgagatagaggaagaaatagcagctgcgtattgagagatgagga 29022919  T
Q  106 agtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaactgag 164  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||| || |||||||    
T  29022920 agtgtgtagaaacagtgaagaaggttgtggagaaatggaagggatatgtagcaactgag 29022978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 298 - 498
Target Start/End: Original strand, 29023108 - 29023309
Alignment:
Q  298 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnnnn-gacaaaatataagaaattctatatttaggggcgtttgatca 396  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||| |||||||| ||||| |||    
T  29023108 atcactacacgttaaaaaatacagctttggcaaatgtgatataattgttttttttttttgacaaaatataagaaattctatttttaggggtgtttggtca 29023207  T
Q  397 ttttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatct 496  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  29023208 ttttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataacaatcaattttaaacaagtgtatccaaatataaaccaattcatct 29023307  T
Q  497 ca 498  Q
    ||    
T  29023308 ca 29023309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 389 - 484
Target Start/End: Original strand, 44926802 - 44926897
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  44926802 tttggtcattttacattcaaaattaattttgattcaaactatccaaataacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 44926897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 498
Target Start/End: Original strand, 42148971 - 42149075
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||  ||  ||||||||| |||| |||||||| ||||| |||||||    
T  42148971 tcattttacattcaaaatcaattttgattcaaattatctaaacaacatcaactcatacgaatcacttttaaataagtctatccaaacataaatcaattca 42149070  T
Q  494 tctca 498  Q
     ||||    
T  42149071 cctca 42149075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 389 - 492
Target Start/End: Complemental strand, 33627182 - 33627079
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||||| ||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||| ||  |||||||   ||||||||||||| ||||| ||    
T  33627182 tttgataattttacattcaaaatcgattttgattcaaactatccaaacaacattaactcataagaatcacttttagtaaagtgtatccaaacataaatca 33627083  T
Q  489 attc 492  Q
    ||||    
T  33627082 attc 33627079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 403 - 484
Target Start/End: Complemental strand, 25698093 - 25698012
Alignment:
Q  403 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||| |||| |||||||| ||||    
T  25698093 attcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtttatccaaacataa 25698012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 404 - 494
Target Start/End: Complemental strand, 3097339 - 3097249
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 494  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||   ||| |||||||| ||||| ||||||||    
T  3097339 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaagtgagtatatccaaacataaatcaattcat 3097249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 404 - 498
Target Start/End: Complemental strand, 28425605 - 28425511
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatctca 498  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||| ||  |||| |||  ||||||||||||| ||||| ||||||| ||||    
T  28425605 ttcaaaatcaattttgattcaaactatccaaacaacgtcaactcataagaatcacttgtaagaaagtgtatccaaacataaatcaattcacctca 28425511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 389 - 498
Target Start/End: Complemental strand, 4941929 - 4941820
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| ||||||||||||||||||||||||| ||| ||| ||| |||||||||||||||||||| ||   |||||||| || | |||||||| ||||| ||    
T  4941929 tttggtcattttacattcaaaatcaattttaattcaaattattcaaacaacatcaactcataagaatcgcttttaaataattttatccaaacataaatca 4941830  T
Q  489 attcatctca 498  Q
    ||||| ||||    
T  4941829 attcacctca 4941820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 396 - 493
Target Start/End: Complemental strand, 41289199 - 41289102
Alignment:
Q  396 attttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||  |||| ||  |||||||   ||||||||||||| ||||| |||||||    
T  41289199 attttgcattcaaaatcaattttgattcaaactatccaaacaacatcaacctataagaatcacttttagtaaagtgtatccaaacataaatcaattca 41289102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 6399244 - 6399152
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||  ||||||||   |||||||| ||| ||||| |||||||    
T  6399244 acattcaaaatcaattttgattaaaattatccaaacaacatcaactcataagaatcacttttaagtgagtgtatcgaaacataaatcaattca 6399152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 36114173 - 36114093
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||||||| ||  |||||||||| |||||||||||| ||||    
T  36114173 ttcaaaatcaattttgattcaaattatccaaacaatatcaactcataagaatcacttttaaacgagtgtatccaaacataa 36114093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 43550864 - 43550956
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||||||| ||| |||||||||||||||||| || || ||  ||||||||  ||||||||||||| ||||| |||||||    
T  43550864 acattcaaaatcaattttgattcaaattatccaaacaacatcaacccacaagaatcacttttaataaagtgtatccaaacataaatcaattca 43550956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 404 - 475
Target Start/End: Original strand, 27649722 - 27649793
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatc 475  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||  |||||||||  ||||||||    
T  27649722 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaatgagtgtatc 27649793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 484
Target Start/End: Original strand, 8124945 - 8125027
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| |||||||||||||||| |||||||||||||||| ||||||| ||| ||  |||||||||  |||||||||||| ||||    
T  8124945 catttaaaatcaattttgattcaaactatccaaacaacttcaactcctaagaatcacttttaaatgagtgtatccaaacataa 8125027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 404 - 451
Target Start/End: Complemental strand, 38152307 - 38152260
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  38152307 ttcaaaatcaattttgatttaaagtatccaaaccacatcaactcataa 38152260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 407 - 493
Target Start/End: Original strand, 3467512 - 3467598
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||| ||||||||||| ||||||||| |||||| ||  ||||||||| || | |||||||| | ||| |||||||    
T  3467512 aaaatcaattttgattcaaactatccaaccaacatcaattcataagaatcacttttaaataaatatatccaaacagaaatcaattca 3467598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 451
Target Start/End: Complemental strand, 40742429 - 40742379
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  40742429 acatttaaaatcaattttgatttaaaatatccaaacatcatcaactcataa 40742379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 490
Target Start/End: Original strand, 26125545 - 26125634
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaat 490  Q
    |||||||||||||||||||||||||||  ||||||||  |||||||||||| ||  | ||||| |  |||||||||||| ||||| ||||    
T  26125545 acattcaaaatcaattttgatttaaaccgtccaaacattatcaactcataagaatcatttttacattagtgtatccaaacataaatcaat 26125634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 40742085 - 40742189
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    ||||||||||  |||||||||||||| ||| ||| |||  |||||||||| |||||||||||| ||  | |||||   ||||||||||||| ||||| ||    
T  40742085 tttgatcattacacattcaaaatcaagtttcattcaaatcatccaaacaatatcaactcataagaatcaattttattaaagtgtatccaaacataaatca 40742184  T
Q  489 attca 493  Q
    |||||    
T  40742185 attca 40742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 41981136 - 41981180
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||||||||||||| ||| ||||||||||||||||||||||||    
T  41981136 aaaatcaattttgattcaaagtatccaaacaacatcaactcataa 41981180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 440332 - 440233
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||||| |||||||| || ||||||||||||| | ||||||||| ||  | ||||||   | |||||||||| ||||| |||||||    
T  440332 tcattatacattcaaaatcagttttgattcaatctatccaaacaacgttaactcataagaatcatttttaactgaatgtatccaaacataaatcaattca 440233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 22936936 - 22936837
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| || |||||||| ||| ||||||| |||||||||||||||||||||  || || ||  |||| |||  ||||||||||||| ||||| |||||||    
T  22936936 tcattatatattcaaaaccaaatttgattcaaactatccaaacaacatcaatccacaagaatcacttctaataaagtgtatccaaacataaatcaattca 22936837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 415 - 498
Target Start/End: Complemental strand, 42143486 - 42143403
Alignment:
Q  415 ttttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatctca 498  Q
    ||||| || ||| |||||||||||| ||||||||||| ||  ||||||||| |||| |||||||| ||||| ||||||| ||||    
T  42143486 ttttgtttcaaattatccaaacaacgtcaactcataagaatcacttttaaataagtttatccaaacataaatcaattcacctca 42143403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 414 - 484
Target Start/End: Complemental strand, 24897710 - 24897640
Alignment:
Q  414 attttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||| ||| |||||||||||||||||||||||| ||  | ||||||| || |||||||||| ||||    
T  24897710 attttgattcaaattatccaaacaacatcaactcataagaatcaattttaaataaatgtatccaaacataa 24897640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 440
Target Start/End: Original strand, 26243065 - 26243103
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaaca 440  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  26243065 cattcaaaatcaattttgattcaaactatccaaacaaca 26243103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 494
Target Start/End: Complemental strand, 34342985 - 34342896
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 494  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||| |||| ||  ||||||||| || | |||||||| | ||| ||||||||    
T  34342985 ttcaaaatcaattttgattcaaattatccaaacaacatccact-ataagaatcacttttaaataaatttatccaaacaaaaatcaattcat 34342896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 3619205 - 3619164
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  3619205 tacatttaaaatcaattttgattcaaactatccaaacaacat 3619164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 437
Target Start/End: Complemental strand, 37458440 - 37458403
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaaca 437  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  37458440 tacattcaaaatcaattttgattcaaactatccaaaca 37458403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 441
Target Start/End: Complemental strand, 24297721 - 24297687
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||||||||| ||||||||||||||||||    
T  24297721 aaaatcaattttgattcaaactatccaaacaacat 24297687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 442
Target Start/End: Original strand, 26575807 - 26575849
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacatc 442  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  26575807 tacattcaaaagcaattttgatcaaaactatccaaacaacatc 26575849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 441
Target Start/End: Original strand, 41408169 - 41408203
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||||||||||||||||| ||||||||||    
T  41408169 aaaatcaattttgatttaaactattcaaacaacat 41408203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 2026093 - 2026134
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||||||||||||  || ||||||||||||||||||    
T  2026093 tacattcaaaatcaattttttttaaaactatccaaacaacat 2026134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 17073748 - 17073707
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  17073748 tacattcaaaaacaattttgataaaaactatccaaacaacat 17073707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 17574522 - 17574563
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  17574522 tacattcaaaaacaattttgataaaaactatccaaacaacat 17574563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 35801829 - 35801788
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  35801829 tacattcaaaaacaattttgataaaaactatccaaacaacat 35801788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 406 - 490
Target Start/End: Original strand, 11126494 - 11126578
Alignment:
Q  406 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaat 490  Q
    |||| |||||||||||| |||||||||||||||||  ||||||| | ||  |||| |  | ||||||||||||| ||||| ||||    
T  11126494 caaactcaattttgattcaaactatccaaacaacacaaactcatgaaaatcacttatttataagtgtatccaaacataaatcaat 11126578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 41891955 - 41891915
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  41891955 acatccaaaatcaattttgattcaaactgtccaaacaacat 41891915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 465
Target Start/End: Complemental strand, 45147398 - 45147322
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaa 465  Q
    ||||||||||| |  ||||||||||||||||||| ||  ||| ||||||| ||||||| |||| ||  |||||||||    
T  45147398 tttgatcatttaatgttcaaaatcaattttgattcaagttattcaaacaatatcaacttataagaatcacttttaaa 45147322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 128; Significance: 6e-66; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 298 - 498
Target Start/End: Complemental strand, 41740829 - 41740629
Alignment:
Q  298 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnnnngacaaaatataagaaattctatatttaggggcgtttgatcat 397  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||            |||||||||||||||||||||| |||||||| ||||| ||||    
T  41740829 atcactacacgttaaaaaatacagctttgacaaatgtgatataattttttatttttttgacaaaatataagaaattctatgtttaggggtgtttggtcat 41740730  T
Q  398 tttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatctc 497  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||||||||    
T  41740729 tttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaatcacttttaaacaagtgtattcaaacataaaccaattcatctc 41740630  T
Q  498 a 498  Q
    |    
T  41740629 a 41740629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 6 - 159
Target Start/End: Complemental strand, 41741120 - 41740967
Alignment:
Q  6 aagaagctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagaggaagaaattgcagctgagtattgagagatgagga 105  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||    
T  41741120 aagaagctttcagtttattcaataaggatggtagaaagaatggaatgaaattattgtgagatagaggaagaaattgcagttgtgtattgagagatgagga 41741021  T
Q  106 agtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaa 159  Q
    ||||||||||||| ||||||||||||||||| |||| ||||| |||||||||||    
T  41741020 agtgtgtagaaaccgtgaagaaggttgtggagaaattgaagggatatgcagaaa 41740967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 389 - 484
Target Start/End: Original strand, 32454504 - 32454599
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  32454504 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 32454599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 40885177 - 40885282
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaact-acttttaaacaagtgtatccaaatataaacc 487  Q
    ||||||||||  | |||||||||||||||||||| ||||||||||||||| |||||||||||| |||| |||||||||||||||| |||||| ||||| |    
T  40885177 tttgatcattacatattcaaaatcaattttgattcaaactatccaaacaatatcaactcataaaaactcacttttaaacaagtgtgtccaaacataaatc 40885276  T
Q  488 aattca 493  Q
    ||||||    
T  40885277 aattca 40885282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 389 - 491
Target Start/End: Complemental strand, 40495502 - 40495401
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||  ||||||||| ||||||||||||| ||||| ||    
T  40495502 tttgatcattgtacattccaaatcaattttgatttaaactattcaaacaa-atcaactcataaaaatcacttttaaaaaagtgtatccaaacataaatca 40495404  T
Q  489 att 491  Q
    |||    
T  40495403 att 40495401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 3667821 - 3667925
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||||| ||    
T  3667821 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 3667920  T
Q  489 attca 493  Q
    |||||    
T  3667921 attca 3667925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 22482161 - 22482260
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  22482161 tcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 22482260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 413 - 498
Target Start/End: Complemental strand, 39988088 - 39988003
Alignment:
Q  413 aattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatctca 498  Q
    ||||||||||||||  ||||||||||||||||||||||| ||  ||||||||| ||||||||||||| ||||| ||||||| ||||    
T  39988088 aattttgatttaaatcatccaaacaacatcaactcataagaatcacttttaaataagtgtatccaaacataaatcaattcacctca 39988003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 13253212 - 13253132
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||| ||  |||||||||  |||||||||||| ||||    
T  13253212 ttcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttttaaatgagtgtatccaaacataa 13253132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 35760156 - 35760260
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  | ||||||   |||||||||||| ||||| ||    
T  35760156 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcagttttaattgagtgtatccaaacataaatca 35760255  T
Q  489 attca 493  Q
    |||||    
T  35760256 attca 35760260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 407 - 498
Target Start/End: Complemental strand, 7386059 - 7385968
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatctca 498  Q
    |||| ||||||||||||||| |||||||||||||||||||||||| ||  ||||||||| ||||||||  ||| ||||| ||||||| ||||    
T  7386059 aaaagcaattttgatttaaattatccaaacaacatcaactcataagaatcacttttaaataagtgtatttaaacataaatcaattcacctca 7385968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 407 - 491
Target Start/End: Complemental strand, 8049178 - 8049094
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    |||| |||||||||||||||  |||||||||||| |||||||||| ||  ||||||||| ||||||||||||| ||||| |||||    
T  8049178 aaaagcaattttgatttaaatcatccaaacaacaacaactcataagaatcacttttaaataagtgtatccaaacataaatcaatt 8049094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 485
Target Start/End: Complemental strand, 16158610 - 16158514
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaa 485  Q
    ||||||||||  |||||||||||||||||||||| |||  ||||||| |||||||| || ||| ||  ||||||||| ||||| |||||||||||||    
T  16158610 tttgatcattacacattcaaaatcaattttgattcaaatcatccaaagaacatcaattcctaagaatcacttttaaaaaagtgcatccaaatataaa 16158514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 405 - 484
Target Start/End: Complemental strand, 2430425 - 2430346
Alignment:
Q  405 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||    
T  2430425 tcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctattgaagtgtatccaaacataa 2430346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 41834871 - 41834963
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||| ||| ||||||||||||||||||||| || ||| ||  |||| ||   ||||||||||||| ||||| |||||||    
T  41834871 acattcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatcacttctagtaaagtgtatccaaacataaatcaattca 41834963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 451
Target Start/End: Complemental strand, 3060355 - 3060306
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  3060355 acattcaaaatcaattttgattcaaactatccaaacaacat-aactcataa 3060306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 494
Target Start/End: Original strand, 10058056 - 10058146
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 494  Q
    ||||||||||||||| ||| ||||||||||||||||||||| || ||| ||  |||| ||   ||||||||||||| ||||| ||||||||    
T  10058056 ttcaaaatcaattttcattcaaactatccaaacaacatcaattcgtaagaatcacttctagtaaagtgtatccaaacataaatcaattcat 10058146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 447
Target Start/End: Original strand, 16843517 - 16843563
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactc 447  Q
    |||||||||||||||| | ||||||||||||||||||||||||||||    
T  16843517 acattcaaaatcaattatcatttaaactatccaaacaacatcaactc 16843563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 7714912 - 7714969
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||| ||||    
T  7714912 tcattatactttcaaaatcaattttaattcaaactatccaaacaacatcaacttataa 7714969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 449
Target Start/End: Complemental strand, 33954034 - 33953986
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 449  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||||||||    
T  33954034 acattcaaaattaattttgattcaaactatccgaacaacatcaactcat 33953986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 491
Target Start/End: Complemental strand, 9275617 - 9275527
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    |||||||||||||| ||| ||| |||  ||||||||||||||||||||||| ||  | |||||   ||||||||||||| ||||| |||||    
T  9275617 acattcaaaatcaagtttcattcaaatcatccaaacaacatcaactcataagaatcaattttattaaagtgtatccaaacataaatcaatt 9275527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 28869613 - 28869547
Alignment:
Q  424 aaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaat 490  Q
    |||||||||||||||||||||||||||| ||  ||||||||  |||||||| |||| ||||| ||||    
T  28869613 aaactatccaaacaacatcaactcataagaatcacttttaagtaagtgtattcaaacataaatcaat 28869547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 484
Target Start/End: Complemental strand, 40791209 - 40791119
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||| |||||||| |||||||||||||| ||  ||||||||||| ||||||||| || ||  ||||||||  ||| ||||||||| ||||    
T  40791209 tcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaattaagcgtatccaaacataa 40791119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 484
Target Start/End: Original strand, 42146280 - 42146370
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||| |||||||| |||||||||||||| ||  ||||||||||| ||||||||| || ||  ||||||||  ||| ||||||||| ||||    
T  42146280 tcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaattaagcgtatccaaacataa 42146370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 3747728 - 3747683
Alignment:
Q  396 attttacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||  |||||||||||||||| ||||||||||||||||||    
T  3747728 attttacatgtaaaatcaattttgattaaaactatccaaacaacat 3747683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 24045803 - 24045860
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| ||| ||||||||||||||| ||| ||| |||||||||||||||||| |||||    
T  24045803 tcattgtacgttcaaaatcaattttaattcaaattatccaaacaacatcaacccataa 24045860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 394 - 446
Target Start/End: Original strand, 27021100 - 27021153
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaac-tatccaaacaacatcaact 446  Q
    ||||| ||||||||||||||||||||||| || | |||||||||||||||||||    
T  27021100 tcattatacattcaaaatcaattttgattcaatcttatccaaacaacatcaact 27021153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 32030698 - 32030739
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaac 445  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  32030698 ttcaaaatcaattttgattcaaactattcaaacaacatcaac 32030739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 40979996 - 40980037
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  40979996 tacattcaaaatcaattttgatcaaaactatccaaacaacat 40980037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 4292128 - 4292220
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||| |||||||||| ||| ||||||||||| ||||||  | || ||  |||| |||  ||||||||||||| ||||| |||||||    
T  4292128 acattcaaaattaattttgattcaaattatccaaacaatatcaaccaacaagaatcacttctaattaagtgtatccaaacataaatcaattca 4292220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 442
Target Start/End: Complemental strand, 33082465 - 33082423
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacatc 442  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  33082465 tacattcaaaagcaattttgatcaaaactatccaaacaacatc 33082423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 493
Target Start/End: Complemental strand, 5710511 - 5710427
Alignment:
Q  408 aaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||| ||| ||||||||||||||| ||| |||||||| ||  |||| | || ||| ||||||||| ||||| |||||||    
T  5710511 aaatcaatttttattcaaactatccaaacaatatctactcataaaaatcacttgt-aataagcgtatccaaacataaagcaattca 5710427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 7071544 - 7071503
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  7071544 tacattcaaaaacaattttgatcaaaactatccaaacaacat 7071503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 8958020 - 8957979
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  8958020 tacattcaaaagcaattttgataaaaactatccaaacaacat 8957979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 11017953 - 11017912
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  11017953 tacattcaaaaacaattttgatgaaaactatccaaacaacat 11017912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 20069204 - 20069163
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  20069204 tacattcaaaaacaattttgatcaaaactatccaaacaacat 20069163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 27738077 - 27738036
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  27738077 tacattcaaaagcaattttgataaaaactatccaaacaacat 27738036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 31906018 - 31906059
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  31906018 tacattcaaaagcaattttgataaaaactatccaaacaacat 31906059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 33386996 - 33386955
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  33386996 tacattcaaaaacaattttgatcaaaactatccaaacaacat 33386955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 25256357 - 25256313
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacatcaa 444  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||    
T  25256357 tacattcaaaaacaattttgatcaaaactatctaaacaacatcaa 25256313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 444
Target Start/End: Complemental strand, 25320146 - 25320102
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacatcaa 444  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||    
T  25320146 tacattcaaaaacaattttgatcaaaactatctaaacaacatcaa 25320102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 6 - 164
Target Start/End: Original strand, 23357835 - 23357993
Alignment:
Q  6 aagaagctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagaggaagaaattgcagctgagtattgagagatgagga 105  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  || ||||| |||||||||||    
T  23357835 aagaagctttcagtttattcaataaggatggtagaaagaatggaatgaaattattgcgagatagaggaagaaattgcaattgtgtattaagagatgagga 23357934  T
Q  106 agtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaactgag 164  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  23357935 agtgtgtagaaacagtgaagaaggttgtggagaaatggaagggatatgccgaaactgag 23357993  T

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Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 298 - 498
Target Start/End: Original strand, 23358127 - 23358329
Alignment:
Q  298 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnnnn--gacaaaatataagaaattctatatttaggggcgtttgatc 395  Q
    |||||||||| ||||||||||||||||||| ||||||||||||||||             |  |||||| || ||||||||  |||||||| ||||| ||    
T  23358127 atcactacacgttaaaaaatacagctttggtaaatgtgatataattgttttttttttgttggaaaaatacaacaaattctacgtttaggggtgtttggtc 23358226  T
Q  396 attttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatc 495  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||  ||||||||||||||||||||||| |||||| | ||||||    
T  23358227 attttacattcaaaatcaattttgattcaaactatccaaacaacattaactcatcacaatcacttttaaacaagtgtatccaaacataaactatttcatc 23358326  T
Q  496 tca 498  Q
    |||    
T  23358327 tca 23358329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 389 - 484
Target Start/End: Complemental strand, 7472819 - 7472724
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||| ||||||||||||| ||||    
T  7472819 tttggtcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtgtatccaaacataa 7472724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 381 - 492
Target Start/End: Complemental strand, 44619215 - 44619104
Alignment:
Q  381 taggggcgtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaat 480  Q
    |||||| ||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||| ||  | |||||||||||||||||||||     
T  44619215 taggggtgtttggtcattttacattcaaaatcgattttaattcaaactatccaaacaacatcaactcataataatcatttttaaacaagtgtatccaaac 44619116  T
Q  481 ataaaccaattc 492  Q
    ||||| ||||||    
T  44619115 ataaatcaattc 44619104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 381 - 498
Target Start/End: Original strand, 2215208 - 2215323
Alignment:
Q  381 taggggcgtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaat 480  Q
    |||||| ||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||  || || || |||||||||||||||||||||     
T  2215208 taggggtgtttggtcattttacattcaaaatcaattctaatttaaattatccaaacaacatcaactc--aaaaattatttttaaacaagtgtatccaaac 2215305  T
Q  481 ataaaccaattcatctca 498  Q
    ||||| ||||||| ||||    
T  2215306 ataaatcaattcacctca 2215323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 9988648 - 9988543
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| |||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||  ||  ||||||||| ||||||||||||| ||||| |    
T  9988648 gtttggtcattacacattcaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaaataagtgtatccaaacataaatc 9988549  T
Q  488 aattca 493  Q
    ||||||    
T  9988548 aattca 9988543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 383 - 493
Target Start/End: Complemental strand, 28127439 - 28127329
Alignment:
Q  383 ggggcgtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatat 482  Q
    |||| ||||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||    
T  28127439 ggggtgtttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacat 28127340  T
Q  483 aaaccaattca 493  Q
    ||| |||||||    
T  28127339 aaatcaattca 28127329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 2213468 - 2213572
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||||| ||    
T  2213468 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 2213567  T
Q  489 attca 493  Q
    |||||    
T  2213568 attca 2213572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 389 - 493
Target Start/End: Complemental strand, 25940387 - 25940283
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| ||||| || |||||||||||||||||||| ||||| |||||||||||||| ||||||| ||  |||| || || ||||||| |||||||||| ||    
T  25940387 tttggtcattatatattcaaaatcaattttgattcaaactgtccaaacaacatcatctcataataatcacttctatacgagtgtattcaaatataaatca 25940288  T
Q  489 attca 493  Q
    |||||    
T  25940287 attca 25940283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 39141600 - 39141520
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||  | |||||||  |||||||||||| ||||    
T  39141600 ttcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaaatgagtgtatccaaacataa 39141520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 401 - 484
Target Start/End: Complemental strand, 5916375 - 5916292
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |  ||  ||||||||  ||||||||||||| ||||    
T  5916375 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcacttttaataaagtgtatccaaacataa 5916292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 401 - 484
Target Start/End: Original strand, 36312251 - 36312334
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |  ||  ||||||||  ||||||||||||| ||||    
T  36312251 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcacatgaatcacttttaataaagtgtatccaaacataa 36312334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 8170280 - 8170337
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  8170280 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 8170337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 7296122 - 7296221
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| || |||||||||||||||||| |||||||||||||| |||||||| |||| | ||  ||||||| |  |||||||||||| ||||| |||||||    
T  7296122 tcattatatattcaaaatcaattttgacttaaactatccaaataacatcaagtcatgataatcacttttatatgagtgtatccaaacataaatcaattca 7296221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 401 - 484
Target Start/End: Original strand, 14821137 - 14821220
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||    
T  14821137 acattcaaaatcaattttgattcaaaatatccaaacaacatcaactcataagaatcacttctagtaaagtgtatccaaacataa 14821220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 408 - 493
Target Start/End: Complemental strand, 1945166 - 1945081
Alignment:
Q  408 aaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  1945166 aaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 1945081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 449
Target Start/End: Complemental strand, 7295487 - 7295432
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 449  Q
    ||||| || |||||||||||| ||||| ||||||||||||||||||||||||||||    
T  7295487 tcattatatattcaaaatcaagtttgacttaaactatccaaacaacatcaactcat 7295432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 28261261 - 28261360
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||| ||||| |||||||||| ||||||| |||||||||||||||||||| ||  |||| ||    || ||||||||||||||| |||||||    
T  28261261 tcattatacatttaaaattaattttgattcaaactattcaaacaacatcaactcataagaatcacttctatgtgagagtatccaaatataaatcaattca 28261360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 472
Target Start/End: Complemental strand, 31562818 - 31562747
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgt 472  Q
    |||||||||||||||||||||| ||| ||||||||||| || ||||||||| ||  |||||||||| |||||    
T  31562818 acattcaaaatcaattttgattcaaattatccaaacaatataaactcataagaatcacttttaaacgagtgt 31562747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 447
Target Start/End: Complemental strand, 42516110 - 42516063
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacatcaactc 447  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  42516110 tacattcaaaatcaattttaattcaaactatccaaacaacatcaactc 42516063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 443
Target Start/End: Original strand, 18511077 - 18511118
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatca 443  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  18511077 cattcaaaatcaattttgatttaaattatccaaacaacatca 18511118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 36548167 - 36548224
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| ||| ||||||||||||||| ||||||| |||||||||||||||||| |||||    
T  36548167 tcattgtacgttcaaaatcaattttaatttaaattatccaaacaacatcaacccataa 36548224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 464
Target Start/End: Original strand, 32501961 - 32502023
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 464  Q
    |||| |||||||||||||||| |||||| |||||||| |||||||| ||| || |||||||||    
T  32501961 catttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaa 32502023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 26208076 - 26207971
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| ||||| |||||| |||||||||||||||| | |  ||||||||||||||||||  ||| ||  | ||||||  ||||||||| ||| ||||| |    
T  26208076 gtttggtcattgtacatttaaaatcaattttgattcatataatccaaacaacatcaacttgtaagaatcaattttaattaagtgtatcaaaacataaatc 26207977  T
Q  488 aattca 493  Q
    ||||||    
T  26207976 aattca 26207971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 3853874 - 3853914
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  3853874 acattcaaaagcaattttgattcaaactatccaaacaacat 3853914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 2234900 - 2234950
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||| ||||| |||||||||| |||||||||||||||||| |||||||||    
T  2234900 tacatttaaaattaattttgattcaaactatccaaacaacat-aactcataa 2234950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 442
Target Start/End: Complemental strand, 15283389 - 15283350
Alignment:
Q  403 attcaaaatcaattttgatttaaactatccaaacaacatc 442  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  15283389 attcaaaatcaattttaatctaaactatccaaacaacatc 15283350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 439
Target Start/End: Complemental strand, 37640275 - 37640236
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaac 439  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  37640275 tacattcaaaatcaattttgataaaaactatccaaacaac 37640236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 475
Target Start/End: Complemental strand, 42089639 - 42089592
Alignment:
Q  428 tatccaaacaacatcaactcataacaactacttttaaacaagtgtatc 475  Q
    |||||||||||||||||||||||| ||  ||||||||| |||||||||    
T  42089639 tatccaaacaacatcaactcataagaatcacttttaaataagtgtatc 42089592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 493
Target Start/End: Original strand, 27911386 - 27911472
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||| ||||||| |||||||| ||||||||||   || ||  |||||||||  ||| |||||||| ||||| |||||||    
T  27911386 aaaatcaattttaatttaaagtatccaaataacatcaacttgaaataatcacttttaaatgagtatatccaaacataaatcaattca 27911472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 7474113 - 7474154
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  7474113 tacattcaaaagcaattttgataaaaactatccaaacaacat 7474154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 17481374 - 17481415
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  17481374 tacattcaaaagcaattttgataaaaactatccaaacaacat 17481415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 28641616 - 28641708
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaa-caagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||| ||| ||  ||||||||||||||||||| |||| ||  |||||||||  |||| || ||||||||||| |||||||    
T  28641616 acatttaaaatcaattttaattcaacatatccaaacaacatcaacttataataatcacttttaaatgaagt-tacccaaatataaatcaattca 28641708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 43341788 - 43341747
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  43341788 tacattcaaaagcaattttgataaaaactatccaaacaacat 43341747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 491
Target Start/End: Complemental strand, 43436410 - 43436325
Alignment:
Q  406 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    ||||||||||||| ||  || |||||||||||||||||| |||||  || ||||||||||  |||| ||| ||| ||||| |||||    
T  43436410 caaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatcaaaacataaatcaatt 43436325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 43695614 - 43695655
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  43695614 tacattcaaaaacaattttgatcgaaactatccaaacaacat 43695655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 16467066 - 16467110
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| ||||||||| |||||||||||||| |||||||| |||||    
T  16467066 aaaattaattttgatctaaactatccaaactacatcaacccataa 16467110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 25748027 - 25747975
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||| ||| ||| ||||||| ||||||||||| |||||| |||||||||||    
T  25748027 tttgataattatactttcaaaagcaattttgattcaaactacccaaacaacat 25747975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 5e-57; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 292244 - 292096
Alignment:
Q  9 aagctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagaggaagaaattgcagctgagtattgagagatgaggaagt 108  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  292244 aagctttcagtttatttaataaggatggtagaaagaatggaatgaaattattgcgagatagaggaagaaattgcaactgtgtattgagagatgagaaagt 292145  T
Q  109 gtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcaga 157  Q
    |||||||||| ||||||||| ||||||| |||||||||| |||||||||    
T  292144 gtgtagaaaccgtgaagaagtttgtggagaaatggaagggatatgcaga 292096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 298 - 498
Target Start/End: Complemental strand, 291949 - 291757
Alignment:
Q  298 atcactacacattaaaaaatacagctttggcaaatgtgatataattgnnnnnnnnnnn----gacaaaatataagaaattctatatttaggggcgtttga 393  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||               || ||||||||||||||||||| |||||||| |||||     
T  291949 atcactacaggttaaaaaatacagctttggcaaatgtgatataattgtttttttttttttttgataaaatataagaaattctatgtttaggggtgtttgg 291850  T
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||||||||||||||         |||||||   |||||||||||||  ||||||||||||||||||||||| |||||||||||||    
T  291849 tcattttacattcaaaatcaattttgatt---------caaacaa---caactcataacaatcacttttaaacaagtgtatccaaacataaaccaattca 291762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 389 - 491
Target Start/End: Original strand, 12468190 - 12468291
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||  ||||||||| ||||||||||||||||||| ||    
T  12468190 tttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaa-atcaactcataaaaatcacttttaaaaaagtgtatccaaatataaatca 12468288  T
Q  489 att 491  Q
    |||    
T  12468289 att 12468291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 42850356 - 42850264
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  42850356 acattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataagaatcacttttaaggaagtgtatccaaacataaatcaattca 42850264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 389 - 484
Target Start/End: Complemental strand, 43729026 - 43728931
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| |||||| | |||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||| |||| |||||||| ||||    
T  43729026 tttggtcatttaatattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaataagtttatccaaacataa 43728931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 12247412 - 12247492
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  12247412 ttcaaaatcaattttgattcaaattctccaaacaacatcaactcataaaaatcacttttaaacaagtgtatccaaacataa 12247492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 35569346 - 35569247
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  35569346 tcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 35569247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 493
Target Start/End: Original strand, 31223350 - 31223455
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| |||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||| |    
T  31223350 gtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatccaaacataaatc 31223449  T
Q  488 aattca 493  Q
    ||||||    
T  31223450 aattca 31223455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 404 - 493
Target Start/End: Original strand, 35536064 - 35536152
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||| ||  |||||||||| |||||||| ||| || ||||||||||    
T  35536064 ttcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcacttttaaacgagtgtatctaaacat-aaccaattca 35536152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 20800421 - 20800322
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  20800421 tcattatacattcaaaatcaatattgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 20800322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 6464597 - 6464647
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6464597 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 6464647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 45710038 - 45710088
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45710038 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataa 45710088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 493
Target Start/End: Original strand, 48510884 - 48510989
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    |||||||||||  ||| | |||||||||||||||  | ||||| ||||||||||||| |||||| ||  |||||||| |||||||||||||| ||||| |    
T  48510884 gtttgatcattacacacttaaaatcaattttgatacatactattcaaacaacatcaattcataagaatcacttttaagcaagtgtatccaaacataaatc 48510983  T
Q  488 aattca 493  Q
    ||||||    
T  48510984 aattca 48510989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 400 - 451
Target Start/End: Original strand, 10470578 - 10470629
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  10470578 tacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 10470629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 484
Target Start/End: Original strand, 6166100 - 6166182
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||| ||| ||  |||||||||  |||||||||||| ||||    
T  6166100 catttaaaatcaattttgattcaaactacccaaacaacatcaactcctaagaatcacttttaaatgagtgtatccaaacataa 6166182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 31933716 - 31933766
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  31933716 acattcaaaatcaattttgatgtaaaatatccaaacaacatcaactcataa 31933766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 404 - 498
Target Start/End: Complemental strand, 40229604 - 40229510
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatctca 498  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| || ||  || | |||  ||||||||||||| ||||| ||||||| ||||    
T  40229604 ttcaaaatcaattttgattcaaattatccaaacaacatcaactcagaagaatcacctgtaagaaagtgtatccaaacataaatcaattcacctca 40229510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 493
Target Start/End: Original strand, 1199819 - 1199908
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||||||| |||||||||||||||||||||  || || ||  |||| |||  ||||||||||||| ||||| |||||||    
T  1199819 ttcaaaatcaattttgattcaaactatccaaacaacatcaatccacaagaatcacttctaataaagtgtatccaaacataaatcaattca 1199908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 494
Target Start/End: Original strand, 36205180 - 36205273
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 494  Q
    |||||||||||||||||||||| ||||||||||| ||||||  |||| ||| ||  ||||||||| |||| |||||||  | ||||||||||||    
T  36205180 acattcaaaatcaattttgattcaaactatccaagcaacattcactcgtaagaatcacttttaaataagtttatccaatcaaaaaccaattcat 36205273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 4369939 - 4369847
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||||||| || ||||||||||||||||||||||||| ||  ||||||||   || ||| ||||| ||||| |||||||    
T  4369939 acatttaaaatcaattttgattcaacctatccaaacaacatcaactcataagaatcacttttaagtgagggtacccaaacataaatcaattca 4369847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 493
Target Start/End: Original strand, 13055988 - 13056078
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||  |||||| || ||| |||| |||| ||||| |||||||    
T  13055988 cattcaaaatcaatttttattcaaactatccaaacaatatcaactcataaaaatcactttt-aataagcgtattcaaacataaatcaattca 13056078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 13931614 - 13931657
Alignment:
Q  403 attcaaaatcaattttgatttaaactatccaaacaacatcaact 446  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  13931614 attcaaaatcaattttgattcaaactatccaaacaacatcaact 13931657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 464
Target Start/End: Original strand, 5410631 - 5410692
Alignment:
Q  403 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 464  Q
    |||||||||||||| ||||| ||||||||||||||||||||| |||||| ||  ||||||||    
T  5410631 attcaaaatcaattatgattcaaactatccaaacaacatcaagtcataagaatcacttttaa 5410692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 7826491 - 7826399
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||||||| || |||||||||||||||||| |||||| ||  ||||||||   || ||| ||||| ||||| |||||||    
T  7826491 acatttaaaatcaattttgattcaacctatccaaacaacatcaattcataagaatcacttttaagtgagggtacccaaacataaatcaattca 7826399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 47123363 - 47123467
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||||| ||| |||||  |||| ||||||||||||||  ||||||||||||| ||||| |||| ||  ||||||||  ||||||||||||| | ||| ||    
T  47123363 tttgataattatacatctaaaagcaattttgatttaatgtatccaaacaacaccaacttataagaatcacttttaacgaagtgtatccaaacaaaaatca 47123462  T
Q  489 attca 493  Q
    |||||    
T  47123463 attca 47123467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 50977476 - 50977385
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||| ||| ||||||||||||||| ||| |||||||| ||  |||| | || ||| ||||||||| ||||| |||||||    
T  50977476 acattcaaaatcaatttttattcaaactatccaaacaatatctactcataaaaatcacttgt-aataagcgtatccaaacataaaacaattca 50977385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 484
Target Start/End: Original strand, 25230000 - 25230079
Alignment:
Q  405 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||| ||| ||||||||||||||||||||||| |||| ||  |||| ||   ||||||||||||| ||||    
T  25230000 tcaaaatcaattttcattcaaactatccaaacaacatcaactaataagaatcacttctattaaagtgtatccaaacataa 25230079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 464
Target Start/End: Complemental strand, 11023465 - 11023403
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 464  Q
    |||| |||||||||||||||| |||||| |||||||| |||||||| ||| || |||||||||    
T  11023465 catttaaaatcaattttgattcaaactacccaaacaatatcaactcgtaaaaattacttttaa 11023403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 491
Target Start/End: Original strand, 26058235 - 26058320
Alignment:
Q  406 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    ||||||||||||| ||  || |||||||||||||||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  26058235 caaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 26058320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 46033251 - 46033210
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  46033251 tacattcaaaatcaattttgataaaaactatccaaacaacat 46033210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 11051447 - 11051407
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  11051447 acattcaaaatcaatttttattcaaactatccaaacaacat 11051407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Original strand, 15884216 - 15884255
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  15884216 cattcaaaatcaattttgatccaaactatccaaacaacat 15884255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 444
Target Start/End: Original strand, 36118120 - 36118157
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaa 444  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  36118120 aaaatcaattttggtttaaactatccaaacaatatcaa 36118157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 41512729 - 41512770
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||||||||||  |||| |||||||||||||    
T  41512729 tacattcaaaatcaattttgatcaaaacaatccaaacaacat 41512770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 42137211 - 42137170
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  42137211 tacattcaaaagcaattttgatcaaaactatccaaacaacat 42137170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 427 - 491
Target Start/End: Complemental strand, 27801763 - 27801699
Alignment:
Q  427 ctatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    |||||||||||||||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  27801763 ctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 27801699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 40821814 - 40821858
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 445  Q
    ||||||||| |||||||||||| ||| |||||||| |||||||||    
T  40821814 acattcaaactcaattttgattcaaattatccaaataacatcaac 40821858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 28987827 - 28987668
Alignment:
Q  8 gaagctttcagtttattcaataaggatgatagaaagaatggaatgaaattattgcgagatagagga---agaaattgcagctgagtattgagagatgagg 104  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||   |||||||||| ||| ||||| ||||||||||    
T  28987827 gaagctttcagcttattcaataaggatggtagaaagaatggaatgaaattattgagagatagaggaagaagaaattgcaactgtgtattaagagatgagg 28987728  T
Q  105 aagtgtgtagaaacagtgaagaaggttgtggaaaaatggaaggaatatgcagaaactgag 164  Q
    ||| ||||||||||||||||||| |||||||| |||||||||| | |  |||||||||||    
T  28987727 aagggtgtagaaacagtgaagaaagttgtggagaaatggaagggaaacacagaaactgag 28987668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 389 - 484
Target Start/End: Complemental strand, 43781666 - 43781571
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  43781666 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 43781571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 388 - 493
Target Start/End: Original strand, 51922877 - 51922982
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||   ||||||||||||| ||||| |    
T  51922877 gtttggtcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaattacttttagtaaagtgtatccaaacataaatc 51922976  T
Q  488 aattca 493  Q
    ||||||    
T  51922977 aattca 51922982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 13183199 - 13183094
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| ||  | ||||||| ||||||||||||| ||||| |    
T  13183199 gtttggtcattttacattcaaaatcaattttgatttaaattatccaaaaaacatcaacttataaaaatcatttttaaataagtgtatccaaacataaatc 13183100  T
Q  488 aattca 493  Q
    ||||||    
T  13183099 aattca 13183094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 394 - 484
Target Start/End: Original strand, 30842075 - 30842165
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||| ||  ||||| ||||||||||||||||| ||||    
T  30842075 tcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataagaatcactttcaaacaagtgtatccaaacataa 30842165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 394 - 484
Target Start/End: Complemental strand, 48407840 - 48407750
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||||||||||||||||||||||| ||||||||||||  | |||||||||||| ||  ||||| ||||||||||||||||| ||||    
T  48407840 tcattttacattcaaaatcaattttgattcaaactatccaaatgaaatcaactcataagaatcactttcaaacaagtgtatccaaacataa 48407750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 26651997 - 26651892
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| ||||| ||||||||||||||||||||||| |||||||||||| |||||| |||||||| || ||||||||   ||||||||| ||| ||||| |    
T  26651997 gtttggtcattatacattcaaaatcaattttgattcaaactatccaaataacatcgactcataagaattacttttagtaaagtgtatctaaacataaatc 26651898  T
Q  488 aattca 493  Q
    ||||||    
T  26651897 aattca 26651892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 493
Target Start/End: Complemental strand, 29149455 - 29149351
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| |||||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||||| ||    
T  29149455 tttggtcattttacatttaaaatcaattttgattcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 29149356  T
Q  489 attca 493  Q
    |||||    
T  29149355 attca 29149351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 49136460 - 49136564
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| ||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||  ||||||||   |||||||||||| ||||| ||    
T  49136460 tttggtcattgtacattcaaaatcaattttgattaaaattattcaaacaacatcaactcataagaatcacttttaagtgagtgtatccaaacataaatca 49136559  T
Q  489 attca 493  Q
    |||||    
T  49136560 attca 49136564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 393 - 451
Target Start/End: Original strand, 9893653 - 9893711
Alignment:
Q  393 atcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9893653 atcattatacattcaaaatcaattttaatttaaactatccaaacaacatcaactcataa 9893711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 48550576 - 48550471
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    |||||||||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||| ||  |||| ||   |||| |||||||| ||||| |    
T  48550576 gtttgatcattacacatttaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtttatccaaacataaatc 48550477  T
Q  488 aattca 493  Q
    ||||||    
T  48550476 aattca 48550471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 15603298 - 15603402
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||||||||| ||  | |||||| ||||| |||| ||| | ||| ||    
T  15603298 tttgatcattgtgcattcaaaatcaattttgacttaaattatccaaacaacatcaactcataagaatcatttttaagcaagtatatctaaacacaaatca 15603397  T
Q  489 attca 493  Q
    |||||    
T  15603398 attca 15603402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 16566255 - 16566347
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  16566255 acattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 16566347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 39636735 - 39636827
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||| ||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  39636735 acatttaaaatcaattttgattcatactatccaaacaacatcaactcgtaagaatcacttttaagtaagtgtatccaaacataaatcaattca 39636827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 408 - 493
Target Start/End: Complemental strand, 6138749 - 6138664
Alignment:
Q  408 aaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||| ||| |||||||||||||||||||||||||||  ||  | ||||||| ||||||||||||| ||||| |||||||    
T  6138749 aaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcatttttaaataagtgtatccaaacataaatcaattca 6138664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 14072453 - 14072501
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 449  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14072453 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcat 14072501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 389 - 493
Target Start/End: Complemental strand, 19592379 - 19592275
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| ||||| ||||||||||||||||||| ||| |||||||||||||||| |||| || ||| ||  |||||||   ||||||||||||| ||||| ||    
T  19592379 tttggtcattgtacattcaaaatcaattttcattcaaactatccaaacaacgtcaattcgtaagaatcacttttagtaaagtgtatccaaacataaatca 19592280  T
Q  489 attca 493  Q
    |||||    
T  19592279 attca 19592275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 46830205 - 46830113
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| ||||||||||||||| || | |||||||||||||||||||||||| ||  | ||||||  ||||||||||||| ||||| |||||||    
T  46830205 acatttaaaatcaattttgatgtagaatatccaaacaacatcaactcataagaatcaattttaagaaagtgtatccaaacataaatcaattca 46830113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 2175290 - 2175191
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| ||| ||||||||||||||| ||| |||||||||||||||||||||| ||| | ||  |||||||| | |||| ||||||| ||||| |||||||    
T  2175290 tcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcacttttaagcgagtgcatccaaacataaatcaattca 2175191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 493
Target Start/End: Original strand, 6505144 - 6505243
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| || |||||||||||||||||| ||||||||||||||||||||||| |||| | ||  ||||||| |  |||||||| ||| ||||| |||||||    
T  6505144 tcattatatattcaaaatcaattttgacttaaactatccaaacaacatcaagtcatgataatcacttttatatgagtgtatctaaacataaatcaattca 6505243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 9889477 - 9889420
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  9889477 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatctactcataa 9889420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 402 - 451
Target Start/End: Original strand, 28986972 - 28987021
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  28986972 catttaaaatcaattttgattcaaactatccaaacaacatcaactcataa 28987021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 450
Target Start/End: Complemental strand, 32238194 - 32238145
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcata 450  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  32238194 acattcaaaatcagttttgattcaaactatccaaacaacatcaactcata 32238145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 42945047 - 42944942
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| ||||| |||||| |||||||||||||||  | |||||||||||||||||||| ||||| ||  ||||||||  |||| |||| ||| ||||| |    
T  42945047 gtttggtcattatacatttaaaatcaattttgatacatactatccaaacaacatcaacacataagaatcacttttaagtaagtatatctaaacataaatc 42944948  T
Q  488 aattca 493  Q
    ||||||    
T  42944947 aattca 42944942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 494
Target Start/End: Complemental strand, 56241983 - 56241878
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| ||||| |||||||||||||||||||||||||||  ||| |||||  |||||||||||| ||  ||||||| |  | |||||||||| ||||| ||    
T  56241983 tttggtcattatacattcaaaatcaattttgatttaaatcatctaaacattatcaactcataagaatcacttttacattaatgtatccaaacataaatca 56241884  T
Q  489 attcat 494  Q
    ||||||    
T  56241883 attcat 56241878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 494
Target Start/End: Complemental strand, 14564289 - 14564189
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| || |||||||||||||||||||| || ||||||||||||||| ||||||||| ||  ||||||||   |  ||||||||| ||||| |||||||    
T  14564289 tcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaacataaatcaattca 14564190  T
Q  494 t 494  Q
    |    
T  14564189 t 14564189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 491
Target Start/End: Original strand, 38693996 - 38694088
Alignment:
Q  399 ttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    ||||||||||||| |||||||||||||| ||| ||| ||| |||||| ||||| ||  |||||||| | |||||||||||| |||||| ||||    
T  38693996 ttacattcaaaattaattttgatttaaattattcaagcaagatcaacccataagaatcacttttaagcgagtgtatccaaacataaactaatt 38694088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 449
Target Start/End: Original strand, 54152995 - 54153043
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcat 449  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  54152995 acattcaaaatcaattttgattcaaactattcaaacaacatcaactcat 54153043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 407 - 485
Target Start/End: Complemental strand, 43772253 - 43772175
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaa 485  Q
    |||||||||||||||| | | |||||||||||||||||||| ||| ||  |||| |||| ||||||||||||| |||||    
T  43772253 aaaatcaattttgattcatattatccaaacaacatcaactcgtaagaatcacttctaaaaaagtgtatccaaacataaa 43772175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 491
Target Start/End: Complemental strand, 54735786 - 54735696
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    |||||||| ||||||||||||||||| ||  |||||||||||||||||||| ||  ||||||||  |  ||| |||||| |||||||||||    
T  54735786 acattcaagatcaattttgatttaaaatactcaaacaacatcaactcataagaatcacttttaagtatatgtttccaaacataaaccaatt 54735696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 404 - 493
Target Start/End: Original strand, 48908228 - 48908315
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||  || ||||||||| | || ||||||||| || ||||||||||    
T  48908228 ttcaaaatcaattttgattcaagctatccaaacaacatcaacttatatgaattacttttaagcgag-gtatccaaacat-aaccaattca 48908315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 4954187 - 4954095
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| ||||| |||||||||| || ||||||||||||||||||||||||| ||  ||||||||   || ||| ||||| ||||| |||||||    
T  4954187 acatttaaaattaattttgattcaacctatccaaacaacatcaactcataagaatcacttttaagtgagggtacccaaacataaatcaattca 4954095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 484
Target Start/End: Complemental strand, 26426257 - 26426167
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||| |||||||| |||||||||||||| ||  ||||||||||| ||||||||| || ||  ||||||||  ||| ||||||||| ||||    
T  26426257 tcattatacattcacaatcaattttgattcaatgtatccaaacaatatcaactcaaaagaatcacttttaattaagcgtatccaaacataa 26426167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 491
Target Start/End: Complemental strand, 30887289 - 30887199
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    |||||||||||||||||||||  |||| ||||||||| ||| ||||||||| ||  ||||||| |   ||||||||||| ||||| |||||    
T  30887289 acattcaaaatcaattttgatacaaaccatccaaacatcattaactcataagaatcacttttatattggtgtatccaaacataaatcaatt 30887199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 45106357 - 45106398
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  45106357 tacattcaaaatcaattttgataaaaactatccaaacaacat 45106398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 446
Target Start/End: Original strand, 54655200 - 54655245
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaact 446  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||    
T  54655200 acatccaaaatcaattttaatttaaagtatccaaacaacatcaact 54655245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 14054801 - 14054893
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||   || ||  ||||||| | |||| |||||||| ||||| |||||||    
T  14054801 acatccaaaatcaattttaatttaaagtattcaaacaacatcaacttgaaataatcacttttatataagtttatccaaacataaatcaattca 14054893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 54150464 - 54150568
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||||| ||| |||||  |||| ||||||||||||||  ||||||||||||| ||||| |||| ||  | ||||||  ||||||||||||| | ||| ||    
T  54150464 tttgataattatacatctaaaagcaattttgatttaatgtatccaaacaacaccaacttataagaatcatttttaacgaagtgtatccaaacaaaaatca 54150563  T
Q  489 attca 493  Q
    |||||    
T  54150564 attca 54150568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 55638921 - 55638873
Alignment:
Q  403 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||||||||||||||||| | | ||||||||||| ||||||||||||    
T  55638921 attcaaaatcaattttgattcatattatccaaacaatatcaactcataa 55638873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 441
Target Start/End: Original strand, 5025484 - 5025519
Alignment:
Q  406 caaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||||| ||||||||||||||||||    
T  5025484 caaaatcaattttgattcaaactatccaaacaacat 5025519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 493
Target Start/End: Original strand, 13167476 - 13167567
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||| |||| ||||||||||| || ||||||||||| ||| ||  ||||| ||  |||||||||   ||||||||||||||||| |||||||    
T  13167476 catttaaaagcaattttgattcaatctatccaaacatcattaatacataagaatcacttttaaatgggtgtatccaaatataaatcaattca 13167567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 464
Target Start/End: Complemental strand, 31520506 - 31520443
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 464  Q
    ||||| |||||||||||| ||| |||||| ||||| ||||||||||||||| ||  ||||||||    
T  31520506 acatttaaaatcaatttttattcaaactacccaaaaaacatcaactcataaaaatcacttttaa 31520443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 485
Target Start/End: Original strand, 49519686 - 49519764
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaa 485  Q
    |||||||||||| ||  | ||||||||||||| ||||| |||||| ||  | |||||| |||||||||||||| |||||    
T  49519686 aaaatcaattttaatacatactatccaaacaatatcaattcataagaatcatttttaagcaagtgtatccaaacataaa 49519764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 16202655 - 16202614
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  16202655 tacattcaaaagcaattttgatcaaaactatccaaacaacat 16202614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 22605879 - 22605838
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  22605879 tacattcaaaagcaattttgataaaaactatccaaacaacat 22605838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 28963380 - 28963339
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  28963380 tacattcaaaagcaattttgataaaaactatccaaacaacat 28963339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 30417917 - 30417876
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  30417917 tacattcaaaagcaattttgataaaaactatccaaacaacat 30417876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 39733396 - 39733437
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||||| |||||||||  ||||||||||||||||||    
T  39733396 tacattcaaaattaattttgatcaaaactatccaaacaacat 39733437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 491
Target Start/End: Original strand, 48550172 - 48550257
Alignment:
Q  406 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    ||||||||||||| ||  || |||||||||||| ||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  48550172 caaaatcaattttaatccaatctatccaaacaatatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 48550257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 50523387 - 50523350
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  50523387 ttcaaaatcaattttgatcaaaactatccaaacaacat 50523350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 445
Target Start/End: Original strand, 15619567 - 15619610
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 445  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||    
T  15619567 acattcaagatca-ttttgattcaaactatccaaacaacatcaac 15619610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 389 - 484
Target Start/End: Original strand, 9456079 - 9456174
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||  ||||||||||||||||||||||| ||||    
T  9456079 tttggtcattttacattcaaaatcaattttgattcaaactatccaaacaagatcaactcataagaatcacttttaaacaagtgtatccaaacataa 9456174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 389 - 494
Target Start/End: Complemental strand, 43738074 - 43737969
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| |||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||  ||||||||| |||| |||||||| | ||| ||    
T  43738074 tttggtcatttcacattcaaaatcaattttgattcaaactatccaaacaacatccactcataagaatcacttttaaataagtttatccaaacaaaaatca 43737975  T
Q  489 attcat 494  Q
    ||||||    
T  43737974 attcat 43737969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 401 - 484
Target Start/End: Original strand, 48134566 - 48134649
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||  |||||||||||||| |||||||| ||||    
T  48134566 acattcaaaatcaattttgattcaaactatccaaacaacatcaacttataaaaatcacttttaaacaagtttatccaaacataa 48134649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 388 - 493
Target Start/End: Original strand, 37562543 - 37562648
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| |||||  |||| ||||||||||||| ||| |||||||||||||||||||||||||||  ||  ||||||||| ||||||||||||| ||||| |    
T  37562543 gtttggtcattacacatacaaaatcaattttcattcaaactatccaaacaacatcaactcatatgaatcacttttaaataagtgtatccaaacataaatc 37562642  T
Q  488 aattca 493  Q
    ||||||    
T  37562643 aattca 37562648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 3622583 - 3622491
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  3622583 acatttaaaatcaattttgatttatactatccaaacaacatcaactcgtaagaatcacttttaagtaagtgtatccaaacataaatcaattca 3622491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 47301687 - 47301630
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  47301687 tcattttacattcaaaatcaattttgattcaaactatccaaacaacatcaacccataa 47301630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 34010329 - 34010409
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||| ||| |||||||||  ||||||| |||| ||||    
T  34010329 ttcaaaattaattttgattcaaactatccaaacaacatcaactcataagaaccacttttaaatgagtgtattcaaacataa 34010409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 403 - 494
Target Start/End: Original strand, 3342778 - 3342869
Alignment:
Q  403 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 494  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||| ||||||||    
T  3342778 attcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttctattaaagtgtatccaaacataaatcaattcat 3342869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 498
Target Start/End: Complemental strand, 39391257 - 39391163
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatctca 498  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||| ||  |||| |||  ||||||||||||| ||||| ||||||| ||||    
T  39391257 ttcaaaatcaattttgattcaaactattcaaacaacatcaattcataagaatcacttgtaagaaagtgtatccaaacataaatcaattcacctca 39391163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 404 - 493
Target Start/End: Complemental strand, 34366101 - 34366013
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||| ||  |||||| || ||| ||||||||| ||||| |||||||    
T  34366101 ttcaaaatcaatttttattcaaactatccaaacaacatcaactcataaaaatcactttt-aataagcgtatccaaacataaatcaattca 34366013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 47217671 - 47217572
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| ||| ||||||||||||||| ||| |||||||||||||||||||||| ||| | ||  |||||||| | |||| ||||||| ||||| |||||||    
T  47217671 tcattgtacgttcaaaatcaattttaattcaaactatccaaacaacatcaacccatcaaaatcacttttaagcgagtgcatccaaacataaatcaattca 47217572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 493
Target Start/End: Original strand, 19095926 - 19096013
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||||| ||  | |||||||| |||||||||||| || ||||||||||    
T  19095926 ttcaaaatcaattttgattcaaattatccaaacaacat-aactcataagaatcatttttaaacgagtgtatccaaacat-aaccaattca 19096013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 38230054 - 38230146
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  || |||||||||| ||||| |||||||    
T  38230054 acatttaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaaatgtatccaaacataaatcaattca 38230146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 405 - 493
Target Start/End: Complemental strand, 44967518 - 44967430
Alignment:
Q  405 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||| ||  |||| ||   |||||||| |||| ||||| |||||||    
T  44967518 tcaaaatcaattttgattcaaattatccaaacaacatcaactcataagaatcacttctattaaagtgtattcaaacataaatcaattca 44967430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 464
Target Start/End: Complemental strand, 12632206 - 12632143
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 464  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||||| ||  ||||||||    
T  12632206 acattcaaaatcaattttgattcaaacaattcaaacaacatcaactcataagaatcacttttaa 12632143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 3375476 - 3375568
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||||||  |||  |||||||||||||| |||||||| ||  ||||||||   |||||||||||| | ||| |||||||    
T  3375476 acattcaaaatcaattttgatccaaatcatccaaacaacatcgactcataagaatcacttttaagtgagtgtatccaaacacaaatcaattca 3375568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 3750678 - 3750722
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  3750678 aaaattaattttgatttaaactatccaaacaacatcaattcataa 3750722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 32205913 - 32206003
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||||||| | |||||| ||||||||| ||||||||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  32205913 acatttaaaatcaattttgattcatactatc-aaacaacat-aactcataagaatcacttttaagtaagtgtatccaaacataaatcaattca 32206003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 37639416 - 37639508
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| ||||| |||||||||| |||||||||||||||||||||| || || ||  ||||||||  |||| | |||||| ||||| |||||||    
T  37639416 acatttaaaattaattttgattcaaactatccaaacaacatcaacccacaagaatcacttttaataaagtttctccaaacataaatcaattca 37639508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 445
Target Start/End: Complemental strand, 10372080 - 10372037
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaac 445  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||    
T  10372080 cattcaaaatcaattttgattcaaactatccgaacaacatcaac 10372037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 407 - 493
Target Start/End: Original strand, 48459702 - 48459788
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||| ||  | ||||||||||||||||| | |||||| ||  ||||||||  ||||||||||||| ||||| |||||||    
T  48459702 aaaatcaattttaatacatactatccaaacaacatccattcataagaatcacttttaagtaagtgtatccaaacataaatcaattca 48459788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 4035919 - 4035960
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  4035919 tacattcaaaagcaattttgattaaaactatccaaacaacat 4035960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 491
Target Start/End: Original strand, 32186931 - 32187016
Alignment:
Q  406 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    ||||||||||||| ||  || |||||||||||||||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  32186931 caaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 32187016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 404 - 464
Target Start/End: Complemental strand, 34011082 - 34011021
Alignment:
Q  404 ttcaaaatcaattttgatttaaacta-tccaaacaacatcaactcataacaactacttttaa 464  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||||| ||  ||||||||    
T  34011082 ttcaaaatcaattttgatttaaagtaccccaaacaacatcaactcataagaatcacttttaa 34011021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 40903291 - 40903250
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  40903291 tacatccaaaatcaattttgatttgaactatccaaacaacat 40903250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 491
Target Start/End: Original strand, 41715648 - 41715733
Alignment:
Q  406 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    ||||||||||||| ||  || |||||||||||||||||| |||||  || ||||||||||  |||| ||||||| ||||| |||||    
T  41715648 caaaatcaattttaatccaatctatccaaacaacatcaattcatatgaattacttttaaatgagtgcatccaaacataaatcaatt 41715733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 493
Target Start/End: Original strand, 42904551 - 42904631
Alignment:
Q  413 aattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||| ||| ||||||| || || |||||| ||  |||||||||| |||||||| ||| ||||| |||||||    
T  42904551 aattttgatttaaaatatacaaacaaaattaattcataagaatcacttttaaacgagtgtatcaaaacataaatcaattca 42904631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 47021905 - 47021997
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||| ||| ||| ||||||||||||||||| || ||| ||  || | ||   ||||||||||||| ||||| |||||||    
T  47021905 acattcaaaatcaattttcattcaaattatccaaacaacatcaattcgtaagaatcacatctagtaaagtgtatccaaacataaatcaattca 47021997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Complemental strand, 37886905 - 37886854
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaaca 440  Q
    |||||| ||| || ||| |||||||||||||||| |||||||||||||||||    
T  37886905 tttgataattatatatttaaaatcaattttgattcaaactatccaaacaaca 37886854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 446
Target Start/End: Original strand, 39977544 - 39977583
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaact 446  Q
    |||||||||||| ||||||| |||||||||||||||||||    
T  39977544 aaaatcaattttaatttaaagtatccaaacaacatcaact 39977583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 444
Target Start/End: Complemental strand, 386597 - 386560
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaa 444  Q
    |||||||||||||||| || ||||||||||||||||||    
T  386597 aaaatcaattttgattcaatctatccaaacaacatcaa 386560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 26826952 - 26826993
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  26826952 tacattcaaaagcaattttgataaaaactatccaaacaacat 26826993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 41065340 - 41065381
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  41065340 tacattcaaaagcaattttgatcaaaactatccaaacaacat 41065381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 43631828 - 43631771
Alignment:
Q  391 tgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactca 448  Q
    |||| ||| |||||||| |||||||||||||| ||  ||||||||||| |||||||||    
T  43631828 tgataattatacattcacaatcaattttgattcaatatatccaaacaatatcaactca 43631771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 12964412 - 12964483
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactactttt 462  Q
    |||||||||||  |||||||||||   | |||| | |||||||||||||||||| ||||||||| || |||||||    
T  12964412 gtttgatcattacacattcaaaat---tgttgactcaaactatccaaacaacattaactcataataattactttt 12964483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 491
Target Start/End: Original strand, 42740384 - 42740468
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    |||||||||||||||  | ||||||||||||| |||||| ||||| ||  ||||||||  |||| |||| ||| ||||| |||||    
T  42740384 aaaatcaattttgatacatactatccaaacaatatcaacacataagaatcacttttaagtaagtatatctaaacataaatcaatt 42740468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 441
Target Start/End: Complemental strand, 42752326 - 42752274
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||| ||| | |||||||||||||||||||| |||  ||||||||||||||    
T  42752326 tttgataattatgcattcaaaatcaattttgatctaagttatccaaacaacat 42752274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 389 - 484
Target Start/End: Original strand, 13739159 - 13739254
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  13739159 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 13739254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 389 - 484
Target Start/End: Original strand, 13744659 - 13744754
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  ||||||||||||||||||||||| ||||    
T  13744659 tttggtcattttacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaaacaagtgtatccaaacataa 13744754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 389 - 493
Target Start/End: Complemental strand, 29409399 - 29409295
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  | ||||||| || |||||||||| ||||| ||    
T  29409399 tttggtcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcatttttaaaaaactgtatccaaacataaatca 29409300  T
Q  489 attca 493  Q
    |||||    
T  29409299 attca 29409295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 31132432 - 31132512
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||| ||  ||||||||| ||||||||||||| ||||    
T  31132432 ttcaaaatcaattttgattcaaactatccaaacaacatcaacccataagaatcacttttaaataagtgtatccaaaaataa 31132512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 16442499 - 16442394
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| |||||  |||||||||||||||||| ||| ||| ||||||||||| |||||||||||  ||  ||||||||| ||||||||||||| ||||| |    
T  16442499 gtttggtcattacacattcaaaatcaattttcattcaaattatccaaacaatatcaactcatatgaatcacttttaaataagtgtatccaaacataaatc 16442400  T
Q  488 aattca 493  Q
    ||||||    
T  16442399 aattca 16442394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 16548104 - 16548196
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||||||| |||||||||||||||||||||| || |  ||  ||||||||  ||||||||||||| ||||| |||||||    
T  16548104 acattcaaaatcaattttgattcaaactatccaaacaacatcaacccacatgaatcacttttaataaagtgtatccaaacataaatcaattca 16548196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 401 - 494
Target Start/End: Complemental strand, 33899141 - 33899048
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 494  Q
    ||||||||||||||||||||||||||| |||||||||  || ||||||||| ||  ||||||| |  |||||||||||| ||||| ||||||||    
T  33899141 acattcaaaatcaattttgatttaaaccatccaaacattattaactcataagaatcacttttacattagtgtatccaaacataaatcaattcat 33899048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 401 - 484
Target Start/End: Complemental strand, 6208198 - 6208115
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||||| |||||||||| |||||||| ||||||||||||||||||| ||  |||||||   ||||||||||||| ||||    
T  6208198 acattcaaaattaattttgattcaaactatctaaacaacatcaactcataagaatcacttttagtaaagtgtatccaaacataa 6208115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 407 - 493
Target Start/End: Original strand, 10826062 - 10826148
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||| ||||||||||||||| |||||||||||| ||  ||||||||| |||| |||||||| | ||| |||||||    
T  10826062 aaaattaattttgattcaaactatccaaacaaaatcaactcataagaatcacttttaaataagtatatccaaacaaaaatcaattca 10826148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 445
Target Start/End: Complemental strand, 17830134 - 17830090
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaac 445  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  17830134 acattcaaaatcaattttgattcaaactatccaaacaacatcaac 17830090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 492
Target Start/End: Original strand, 699518 - 699613
Alignment:
Q  396 attttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattc 492  Q
    |||||| |||||||||| ||||||||| ||||||||| |||||||| |||| |||| || ||||||||   ||||| ||||||| ||||| ||||||    
T  699518 attttatattcaaaatcgattttgattcaaactatcc-aacaacattaacttataagaattacttttagtaaagtgcatccaaacataaatcaattc 699613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 31745527 - 31745486
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  31745527 tacattcaaaagcaattttgatcaaaactatccaaacaacat 31745486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Complemental strand, 2935735 - 2935695
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||| |||||||||| |||| ||||||||||||||    
T  2935735 acattcaaaaacaattttgatctaaattatccaaacaacat 2935695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 8402 - 8506
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||  | ||||||| ||||||||||||| ||||| ||    
T  8402 tttggtcattgtacattcaaaatcaattttgattcaaactatccaaacaacatcaactcataaaaatcatttttaaaaaagtgtatccaaacataaatca 8501  T
Q  489 attca 493  Q
    |||||    
T  8502 attca 8506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 389 - 491
Target Start/End: Original strand, 53179802 - 53179903
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  ||||||||| ||||||||||||| ||||| ||    
T  53179802 tttggtcattgtacattcaaaatcaattttgatttaaactatccaaacaa-atcaactcataaaaatcacttttaaaaaagtgtatccaaacataaatca 53179900  T
Q  489 att 491  Q
    |||    
T  53179901 att 53179903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 401 - 491
Target Start/End: Original strand, 3348208 - 3348298
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||||||||  ||||||||||||| ||||| |||||    
T  3348208 acattcaaaatcaattttgatataaaatatccaaacaacatcaactcataagaattacttttaaggaagtgtatccaaacataaatcaatt 3348298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 388 - 494
Target Start/End: Original strand, 10334090 - 10334196
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| ||||| || |||||||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||   ||||||||||||| ||||| |    
T  10334090 gtttggtcattataaattcaaaatcaattttgattcaaactatccaaacaacgtcaactcataagaattacttttagtaaagtgtatccaaacataaatc 10334189  T
Q  488 aattcat 494  Q
    |||||||    
T  10334190 aattcat 10334196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 394 - 484
Target Start/End: Original strand, 42318288 - 42318378
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||  ||||| ||||||||||||||||| ||||    
T  42318288 tcattttacattcaaaatcaattttgattcaaactatccaaacgaaatcaactcataagaatcactttcaaacaagtgtatccaaacataa 42318378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 394 - 484
Target Start/End: Complemental strand, 38125584 - 38125494
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||||||| |||||||||| ||||||||||||| | |||||||||||| ||  ||||| ||||||||||||||||| ||||    
T  38125584 tcattttacattcaaaattaattttgattcaaactatccaaacgaaatcaactcataagaatcactttcaaacaagtgtatccaaacataa 38125494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 20813111 - 20813203
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||  |||||| || |||| |||||||| | ||| |||||||    
T  20813111 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttgaataagtatatccaaacaaaaatcaattca 20813203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 390 - 493
Target Start/End: Complemental strand, 31619034 - 31618931
Alignment:
Q  390 ttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaa 489  Q
    ||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| ||  |||| |||   || ||||||||| ||||| |||    
T  31619034 ttgatcattatacattcaaaattaattttgattcaaactatccaaacaacatcaactcataagaatcacttctaagtgagagtatccaaacataaatcaa 31618935  T
Q  490 ttca 493  Q
    ||||    
T  31618934 ttca 31618931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 401 - 491
Target Start/End: Complemental strand, 10853403 - 10853313
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||  ||||||||   ||| |||||||| ||||| |||||    
T  10853403 acattcaaaatcaattttgattcaaactatccaaacaacatcaactcataagaatcacttttaagtgagtatatccaaacataaatcaatt 10853313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 388 - 493
Target Start/End: Complemental strand, 38172456 - 38172351
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacc 487  Q
    ||||| |||||  |||||||||||||||||| ||| |||||||||||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||| |    
T  38172456 gtttggtcattacacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataagaatcacttctattaaagtgtatccaaacataaatc 38172357  T
Q  488 aattca 493  Q
    ||||||    
T  38172356 aattca 38172351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 401 - 494
Target Start/End: Original strand, 44224727 - 44224820
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 494  Q
    |||||||||||||||||||| | ||| |||||||||||||||||||||||| ||  ||||||||   |||||||||||| ||||| ||||||||    
T  44224727 acattcaaaatcaattttgactaaaattatccaaacaacatcaactcataagaatcacttttaagtgagtgtatccaaacataaatcaattcat 44224820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 389 - 493
Target Start/End: Original strand, 26519617 - 26519721
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| |||||||||||| ||||||||||||| || ||||||||||||||| ||||||| |||| ||  ||||||||   |||||||||||| ||||| ||    
T  26519617 tttggtcattttacatttaaaatcaattttgtttcaaactatccaaacaatatcaactaataaaaatcacttttaattgagtgtatccaaacataaatca 26519716  T
Q  489 attca 493  Q
    |||||    
T  26519717 attca 26519721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 388 - 447
Target Start/End: Complemental strand, 16246243 - 16246184
Alignment:
Q  388 gtttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactc 447  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||    
T  16246243 gtttgatcattacacattcaaaatcaattttgattcaaactatccaaacaacatcaactc 16246184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 451
Target Start/End: Complemental strand, 48189584 - 48189527
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  48189584 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatcaactcataa 48189527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 402 - 493
Target Start/End: Complemental strand, 15511510 - 15511420
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||||||||||||||| ||| ||||||||||||||| |||||||||||| ||  |||||| || ||| ||||||||| ||||| |||||||    
T  15511510 cattcaaaatcaatttttattcaaactatccaaacaatatcaactcataaaaatcactttt-aataagcgtatccaaacataaatcaattca 15511420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 445
Target Start/End: Original strand, 23496282 - 23496333
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaac 445  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  23496282 tcattatacattcaaaatcaattttgattcaaactatccaaacaacatcaac 23496333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 35425299 - 35425349
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  35425299 acattcaaaatcaattttgattcaaactatccaaacaatatcaactcataa 35425349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 402 - 484
Target Start/End: Original strand, 53074869 - 53074951
Alignment:
Q  402 cattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||||| ||  ||||||||   |||||||||||| ||||    
T  53074869 catttaaaatcaattttgattcaaactatccaaacaacatccactcataagaatcacttttaagtgagtgtatccaaacataa 53074951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 404 - 493
Target Start/End: Complemental strand, 23207199 - 23207112
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||||| | | |||| |||| ||||||||||||| ||||| |||||||    
T  23207199 ttcaaaattaattttgattcaaactatc-aaacaacatcaactcataaaatc-acttgtaaaaaagtgtatccaaacataaatcaattca 23207112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 494
Target Start/End: Original strand, 35930703 - 35930796
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 494  Q
    ||||||||||||||||||||||||||| |||||||||  |||||||||||| ||  |||| || |  |||||||||||  ||||| ||||||||    
T  35930703 acattcaaaatcaattttgatttaaaccatccaaacattatcaactcataagaatgacttatacattagtgtatccaagcataaatcaattcat 35930796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 484
Target Start/End: Complemental strand, 8424861 - 8424782
Alignment:
Q  405 tcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||| ||  |||| ||   ||||||||||||| ||||    
T  8424861 tcaaaatcaattttgattcaaactattcaaacaacatcaactcataagaatcacttctattgaagtgtatccaaacataa 8424782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 451
Target Start/End: Complemental strand, 30811667 - 30811617
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  30811667 acattcaaaatcaattttgattcaaactatccaaacaatatcaagtcataa 30811617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 403 - 493
Target Start/End: Original strand, 31084175 - 31084264
Alignment:
Q  403 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    |||||||||||||| ||||| |||||||||||| || ||||| |||||| ||  |||||| || ||||||||||||| ||||| |||||||    
T  31084175 attcaaaatcaattatgattcaaactatccaaataatatcaagtcataagaatcactttt-aagaagtgtatccaaacataaatcaattca 31084264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 401 - 451
Target Start/End: Complemental strand, 44939550 - 44939500
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||    
T  44939550 acattcaaaattaattttgattaaaactattcaaacaacatcaactcataa 44939500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 493
Target Start/End: Original strand, 38340771 - 38340862
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||| ||| |||||||||||||||| |||||| |||| || ||||||| || |||  |||||||| ||||| |||||||    
T  38340771 acatttaaaatcaatttttattcaaactatccaaacaacgtcaacttataaaaattactttt-aataagcatatccaaacataaatcaattca 38340862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 441
Target Start/End: Original strand, 50664712 - 50664764
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||  |||||||||||||||||| |||||||||||| |||||||||    
T  50664712 tttgatcattacacattcaaaatcaattttaatttaaactatctaaacaacat 50664764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 493
Target Start/End: Complemental strand, 52966945 - 52966853
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| |||||||||||||||| || ||||| ||||||||||||||||||| ||  ||||||||   || ||| ||||| ||||| |||||||    
T  52966945 acatttaaaatcaattttgattcaacctatctaaacaacatcaactcataagaatcacttttaagtgagggtacccaaacataaatcaattca 52966853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 464
Target Start/End: Original strand, 22736946 - 22737009
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaa 464  Q
    |||||||||||||||||||||| |||| |||| |||||||| ||||||||| ||  ||||||||    
T  22736946 acattcaaaatcaattttgattcaaaccatcccaacaacattaactcataataatcacttttaa 22737009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 479
Target Start/End: Original strand, 21224943 - 21225033
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaa 479  Q
    |||| ||||| |||| ||| |||||||||||||| |||||||| |||| |||||||||| ||| ||   |||||||  |||||||||||||    
T  21224943 tttggtcattatacactcataatcaattttgattcaaactatcaaaacgacatcaactcgtaagaatcgcttttaagaaagtgtatccaaa 21225033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 30811288 - 30811329
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  30811288 tacattcaaaatcaattttgatcaaaactatccaaacaacat 30811329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 446
Target Start/End: Complemental strand, 55087630 - 55087593
Alignment:
Q  409 aatcaattttgatttaaactatccaaacaacatcaact 446  Q
    |||||||||||||| |||||||||||||||||||||||    
T  55087630 aatcaattttgattcaaactatccaaacaacatcaact 55087593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 491
Target Start/End: Original strand, 32357479 - 32357566
Alignment:
Q  404 ttcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaatt 491  Q
    ||||||||||||||| ||| ||| || ||||||||||||||| ||||| ||  |||||||||  ||||| | |||| ||||| |||||    
T  32357479 ttcaaaatcaattttaattcaaagtacccaaacaacatcaacacataagaatcacttttaaatgagtgttttcaaacataaatcaatt 32357566  T

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Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 451
Target Start/End: Original strand, 14959684 - 14959734
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    |||||||||||||| ||||||| |||  ||| |||||||||||||||||||    
T  14959684 acattcaaaatcaagtttgattcaaatcatctaaacaacatcaactcataa 14959734  T

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Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 442
Target Start/End: Complemental strand, 33329478 - 33329436
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacatc 442  Q
    ||||||||||| ||||||||||  |||||||||||||||||||    
T  33329478 tacattcaaaagcaattttgatcgaaactatccaaacaacatc 33329436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 491
Target Start/End: Original strand, 37117556 - 37117658
Alignment:
Q  389 tttgatcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaacca 488  Q
    |||| |||||||||||| ||||| |||||| ||||||||||| |||| || || || | |||| ||| | |||||||  ||| ||| |||||||||| ||    
T  37117556 tttgctcattttacatttaaaattaattttaatttaaactattcaaataatattaaattataataaccatttttaaatgagtatattcaaatataaatca 37117655  T
Q  489 att 491  Q
    |||    
T  37117656 att 37117658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 407 - 441
Target Start/End: Complemental strand, 37698519 - 37698485
Alignment:
Q  407 aaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||||||||| ||||||||||||||||||    
T  37698519 aaaatcaattttgattcaaactatccaaacaacat 37698485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 400 - 442
Target Start/End: Complemental strand, 44610352 - 44610311
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacatc 442  Q
    ||||||||||||||||||||| | |||||||||||||||||||    
T  44610352 tacattcaaaatcaattttga-tcaaactatccaaacaacatc 44610311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 11264277 - 11264318
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  11264277 tacattcaaaagcaattttgataaaaactatccaaacaacat 11264318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 28884258 - 28884299
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||||||||  |||||||||| ||||||||||||||||||    
T  28884258 tacattcaaaaataattttgattaaaactatccaaacaacat 28884299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 39252061 - 39252102
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  39252061 tacattcaaaagcaattttgataaaaactatccaaacaacat 39252102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 42074914 - 42074955
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||||||||||   |||||||||||||||||    
T  42074914 tacattcaaaatcaattttgataagaactatccaaacaacat 42074955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 45423905 - 45423864
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||| ||||||||||||||||| || |||||||||||||||    
T  45423905 tacatccaaaatcaattttgattcaagctatccaaacaacat 45423864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 48254015 - 48253974
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  48254015 tacattcaaaagcaattttgataaaaactatccaaacaacat 48253974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 51230284 - 51230325
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||||||| ||||||  ||||||||||||||||||    
T  51230284 tacattcaaaatcaaatttgataaaaactatccaaacaacat 51230325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 441
Target Start/End: Original strand, 53078323 - 53078363
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||| ||||||||||||||||| ||||| ||||||||||||    
T  53078323 acatccaaaatcaattttgattcaaactgtccaaacaacat 53078363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 406 - 498
Target Start/End: Complemental strand, 2399 - 2307
Alignment:
Q  406 caaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcatctca 498  Q
    ||||||||||||||||| |||||||| ||||||| ||||||  ||| ||| |||||||||||||||| |||||| ||||| ||||||| ||||    
T  2399 caaaatcaattttgattcaaactatctaaacaacgtcaacttgtaaaaaccacttttaaacaagtgtgtccaaacataaatcaattcacctca 2307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 401 - 484
Target Start/End: Complemental strand, 29258 - 29175
Alignment:
Q  401 acattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataa 484  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||  |||| ||   ||||||||||||| ||||    
T  29258 acattcaaaatcaattttgattcaaactatccaaacaacatcaattcataagaataacttctattaaagtgtatccaaacataa 29175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 394 - 451
Target Start/End: Original strand, 9069 - 9126
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataa 451  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  9069 tcattatacattcaaaatcaattttaattcaaactatccaaacaacatctactcataa 9126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 394 - 494
Target Start/End: Original strand, 253086 - 253186
Alignment:
Q  394 tcattttacattcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattca 493  Q
    ||||| || |||||||||||||||||||| || ||||||||||||||| ||||||||| ||  ||||||||   |  ||||||||| ||||| |||||||    
T  253086 tcattatatattcaaaatcaattttgattcaatctatccaaacaacattaactcataagaatcacttttaactgaaggtatccaaacataaatcaattca 253185  T
Q  494 t 494  Q
    |    
T  253186 t 253186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 494
Target Start/End: Complemental strand, 2161 - 2070
Alignment:
Q  403 attcaaaatcaattttgatttaaactatccaaacaacatcaactcataacaactacttttaaacaagtgtatccaaatataaaccaattcat 494  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||| | ||  ||||||| |  |||| ||||||| ||||| ||||||||    
T  2161 attcaaaatcaattttgacttaaactatccaaacaacatcaagccatgataatcacttttatatgagtgcatccaaacataaatcaattcat 2070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 400 - 441
Target Start/End: Original strand, 46727 - 46768
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||| |||||||||||||||||| |||||||||||||||||    
T  46727 tacatccaaaatcaattttgatttgaactatccaaacaacat 46768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 445
Target Start/End: Complemental strand, 5967 - 5918
Alignment:
Q  401 acattcaaaatcaattttgatt-----taaactatccaaacaacatcaac 445  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||    
T  5967 acattcaaaatcaattttgattcaaattaaactatccaaacaacatcaac 5918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 9295 - 9254
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    |||||| |||||||||||||||  ||||||||||||||||||    
T  9295 tacatttaaaatcaattttgatcaaaactatccaaacaacat 9254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 32582 - 32541
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  32582 tacattcaaaagcaattttgataaaaactatccaaacaacat 32541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 441
Target Start/End: Complemental strand, 301786 - 301745
Alignment:
Q  400 tacattcaaaatcaattttgatttaaactatccaaacaacat 441  Q
    ||||||||||| ||||||||||  ||||||||||||||||||    
T  301786 tacattcaaaaacaattttgatcaaaactatccaaacaacat 301745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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