View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12031_low_4 (Length: 373)
Name: NF12031_low_4
Description: NF12031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12031_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 3470765 - 3470382
Alignment:
| Q |
1 |
tcttctgtaaggcatcaaagaggaagttttggaacagcaatggctaaacatgaagtcacattcaaggatgatgttgaaaggttgaagaaatggaaaaaag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3470765 |
tcttctgtaaggcatcaaagaggaagttttggaacagcaatggctaaacatgaagtcacattcaaggatgatgttgaaaggttgaagaagtggaaaaaag |
3470666 |
T |
|
| Q |
101 |
ccttgtttgatgcagccaatttttcaggttggagcttagaaaatgggtatgtaacaatatattatatatctttcttccttttgtttatgtacctattgat |
200 |
Q |
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| T |
3470665 |
ccttgtttgatgcagccaatttttcaggttggagcttagaaaatgggtatgtaacaatatattatatatctttcttccttttgtttatgtacctattgat |
3470566 |
T |
|
| Q |
201 |
tctattcttatttacata----------------------tagccagggacggacccaggatttttaagtagtgtaggcaaacatttcattttgaaaaac |
278 |
Q |
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| T |
3470565 |
tctattcttatttacatatagatcaatactattatacatatagccagggacggacccaggatttttaagtagtgtaggcaaacatttcattttgaaaaac |
3470466 |
T |
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| Q |
279 |
ataaatatatattactataattattctttacggttttttagattttaaaaacattaaatgattttctcacttttaattcatctc |
362 |
Q |
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| T |
3470465 |
ataaatatatattactataattattctttaccgttttttaaattttaaaaacattaaatgattttttcacttttaattcatctc |
3470382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 31152508 - 31152440
Alignment:
| Q |
294 |
tataattattctttacggttttttagattttaaaaacattaaatgattttctcacttttaattcatctc |
362 |
Q |
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| T |
31152508 |
tataattgttctttacggtttttcagattttaaaaacattgaatgattttctcacttttaattcatctc |
31152440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 31152604 - 31152539
Alignment:
| Q |
222 |
ccagggacggacccaggatttttaagtagtgtaggcaaacatttcattttgaaaaacataaatata |
287 |
Q |
| |
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| T |
31152604 |
ccagggacggacccaaaatttttaagcagtgtaggcaaacatttcattcttaaaaacataaatata |
31152539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 17366365 - 17366304
Alignment:
| Q |
221 |
gccagggacggacccaggatttttaagtagtgtaggcaaacatttcattttgaaaaacataa |
282 |
Q |
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| T |
17366365 |
gccagggacggatccaggatttttaagtagtgtagacaaacatttcatttttaaaaacataa |
17366304 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 17366269 - 17366201
Alignment:
| Q |
294 |
tataattattctttacggttttttagattttaaaaacattaaatgattttctcacttttaattcatctc |
362 |
Q |
| |
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||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||| |||| |
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| T |
17366269 |
tataattgttctttatggttttttagattttaaaaatattgaatgattttctcacttttaattcttctc |
17366201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 294 - 362
Target Start/End: Complemental strand, 8760513 - 8760445
Alignment:
| Q |
294 |
tataattattctttacggttttttagattttaaaaacattaaatgattttctcacttttaattcatctc |
362 |
Q |
| |
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||||||| ||||||||| ||||| | |||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
8760513 |
tataattgttctttacgatttttcaaattttaaaaatattgaatgattttctcacttttaattcatctc |
8760445 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 8760608 - 8760539
Alignment:
| Q |
223 |
cagggacggacccaggatttttaagtagtgtaggcaaacatttcattttgaaaaacataaatatatatta |
292 |
Q |
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|||||| ||| ||| ||||||||| ||||||||||||||||||||| | ||||||||||||||| |||| |
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| T |
8760608 |
cagggatggatccatgatttttaaacagtgtaggcaaacatttcattcttaaaaacataaatatacatta |
8760539 |
T |
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