View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12031_low_7 (Length: 340)

Name: NF12031_low_7
Description: NF12031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12031_low_7
NF12031_low_7
[»] chr3 (3 HSPs)
chr3 (1-330)||(29555364-29555693)
chr3 (54-185)||(50295459-50295586)
chr3 (176-288)||(50706403-50706514)
[»] chr1 (2 HSPs)
chr1 (88-189)||(19825121-19825221)
chr1 (88-131)||(2072461-2072504)
[»] chr7 (2 HSPs)
chr7 (66-124)||(46963923-46963981)
chr7 (67-124)||(44338199-44338256)
[»] chr4 (2 HSPs)
chr4 (66-124)||(16870560-16870618)
chr4 (77-131)||(54147572-54147626)
[»] chr2 (3 HSPs)
chr2 (66-124)||(8986122-8986180)
chr2 (48-118)||(38584277-38584347)
chr2 (121-189)||(38584140-38584208)
[»] chr5 (3 HSPs)
chr5 (67-124)||(24136719-24136776)
chr5 (67-131)||(11335480-11335543)
chr5 (77-189)||(9511733-9511841)
[»] chr8 (3 HSPs)
chr8 (185-256)||(41694893-41694964)
chr8 (67-124)||(20241876-20241933)
chr8 (67-124)||(20251134-20251191)
[»] chr6 (2 HSPs)
chr6 (57-131)||(21861953-21862027)
chr6 (23-71)||(28063835-28063883)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 29555364 - 29555693
Alignment:
Q  1 gtattggttcgcattggtgttattcaatttgtcttggtttggttttgtttagattaatttggttcagtttggtccgatttatttggatgttgggtgagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555364 gtattggttcgcattggtgttattcaatttgtcttggtttggttttgtttagattaatttggttcagtttggtccgatttatttggatgttgggtgagtt 29555463  T
Q  101 aagatagtgctcacaattggtttgattgtttagttggtgagttaagtgctcacaatttaattgcttagtgagtcaagtgatcacaatttatttgtgaaga 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  29555464 aagatagtgctcacaattgatttgattgtttagttggtgagttaattgctcacaatttagttgcttagttagtcaagtgatcacaatttgtttgtgaaga 29555563  T
Q  201 gttctcattaaaggcatatttgaacattttggttacttctccctttattggctcttcggtttaattcgggttttgtttgatatggtttcctcccttcagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  29555564 gttctcattaaaggcatatttgaacattttggttacttctccctttattggctcttcggtttgattccggttttgtttgatatggtttcctcccttcagt 29555663  T
Q  301 tgctgctgctttggatgctcatctcctttg 330  Q
    || |||| ||||||||||||||||||||||    
T  29555664 tgttgctcctttggatgctcatctcctttg 29555693  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 185
Target Start/End: Original strand, 50295459 - 50295586
Alignment:
Q  54 ttaatttggttcagtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttgattgtttagttggtgagttaagtgctcac 153  Q
    ||||||| |||| ||||||| | |||| ||||| |||||| |||||| ||||||||| |||||||    |||||||||  || ||| || ||||||||||    
T  50295459 ttaatttcgttctgtttggttcaatttgtttggttgttggatgagttgagatagtgcacacaatt----tgattgtttgtttagtgggtcaagtgctcac 50295554  T
Q  154 aatttaattgcttagtgagtcaagtgatcaca 185  Q
    |||||  ||| || ||||||| |||| |||||    
T  50295555 aatttggttgtttcgtgagtcgagtgctcaca 50295586  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 288
Target Start/End: Original strand, 50706403 - 50706514
Alignment:
Q  176 agtgatcacaatttatttgtgaagagttctcattaaaggcatatttgaacattttggttacttctccctttattggctcttcggtttaattcgggttttg 275  Q
    |||| ||| ||||| ||||||||||||||||||| ||| |||||||||| ||||| | | |||||| || |||| |||||||  ||| |||  | ||| |    
T  50706403 agtgctcaaaatttgtttgtgaagagttctcattgaagacatatttgaatattttcg-tgcttctctctctatttgctcttctatttgatttcgatttgg 50706501  T
Q  276 tttgatatggttt 288  Q
    |||||||||||||    
T  50706502 tttgatatggttt 50706514  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 19825221 - 19825121
Alignment:
Q  88 tgttgggtgagttaagatagtgctcacaattggtttgattgtttagttggtgagttaagtgctcacaatttaattgcttagtgagtcaagtgatcacaat 187  Q
    |||| ||||||| |||||| ||||||||||| ||||| |||||| ||||||||| ||||||||||||||||  ||| || | ||||| |||| |||||||    
T  19825221 tgtttggtgagtcaagataatgctcacaatttgtttgtttgtttggttggtgag-taagtgctcacaatttggttgtttggcgagtcgagtgctcacaat 19825123  T
Q  188 tt 189  Q
    ||    
T  19825122 tt 19825121  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 2072504 - 2072461
Alignment:
Q  88 tgttgggtgagttaagatagtgctcacaattggtttgattgttt 131  Q
    |||||||||||| ||||||| |||||| ||||||||||||||||    
T  2072504 tgttgggtgagtcaagatagggctcaccattggtttgattgttt 2072461  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Complemental strand, 46963981 - 46963923
Alignment:
Q  66 agtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttg 124  Q
    |||||||| | |||| ||||| |||||||||||| || |||||||||||||||||||||    
T  46963981 agtttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttg 46963923  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 44338199 - 44338256
Alignment:
Q  67 gtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttg 124  Q
    ||||||| | |||| ||||| |||||||||||| || ||||||||||||||| |||||    
T  44338199 gtttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttg 44338256  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 16870560 - 16870618
Alignment:
Q  66 agtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttg 124  Q
    |||||||| | |||| ||||| |||||||||||| || |||||||||||||||||||||    
T  16870560 agtttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttg 16870618  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 54147572 - 54147626
Alignment:
Q  77 atttatttggatgttgggtgagttaagatagtgctcacaattggtttgattgttt 131  Q
    |||| ||||| |||| ||||||| |||||||| ||||||||||||||| ||||||    
T  54147572 atttgtttggttgttaggtgagtcaagatagtcctcacaattggtttgtttgttt 54147626  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 8986122 - 8986180
Alignment:
Q  66 agtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttg 124  Q
    |||||||| | |||| ||||| |||||||||||| || |||||||||||||||||||||    
T  8986122 agtttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttg 8986180  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 38584347 - 38584277
Alignment:
Q  48 tttagattaatttggttcagtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaatt 118  Q
    ||||| || ||| |||| |||||||| | |||| ||||| |||||||||||| || |||||||||||||||    
T  38584347 tttagttttattcggtttagtttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaatt 38584277  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 38584208 - 38584140
Alignment:
Q  121 tttgattgtttagttggtgagttaagtgctcacaatttaattgcttagtgagtcaagtgatcacaattt 189  Q
    |||| |||||| |||||||||| |||||||||||||||  | | || |||||| ||||| |||||||||    
T  38584208 tttggttgtttggttggtgagtcaagtgctcacaatttggtagtttggtgagttaagtgctcacaattt 38584140  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 24136719 - 24136776
Alignment:
Q  67 gtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttg 124  Q
    ||||||| | |||| ||||| |||||||||||| || |||||||||||||||||||||    
T  24136719 gtttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattggtttg 24136776  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 11335543 - 11335480
Alignment:
Q  67 gtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttgattgttt 131  Q
    ||||||| | |||| ||||| |||||| ||||| |||||||||||||||||||||||| ||||||    
T  11335543 gtttggttcaatttgtttggttgttgg-tgagtcaagatagtgctcacaattggtttgtttgttt 11335480  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 189
Target Start/End: Original strand, 9511733 - 9511841
Alignment:
Q  77 atttatttggatgttgggtgagttaagatagtgctcacaattggtttgattgtttagttggtgagttaagtgctcacaatttaattgcttagtgagtcaa 176  Q
    |||| ||||| |||| |||||||||||||||| ||||||||| ||||| ||||    |||||||||  |||||||||| ||   ||| || ||||||| |    
T  9511733 atttgtttggttgttaggtgagttaagatagtcctcacaattcgtttgtttgt----ttggtgagtcgagtgctcacacttcggttgtttggtgagtcga 9511828  T
Q  177 gtgatcacaattt 189  Q
    ||| |||||||||    
T  9511829 gtgctcacaattt 9511841  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 41694964 - 41694893
Alignment:
Q  185 aatttatttgtgaagagttctcattaaaggcatatttgaacattttggttacttctccctttattggctctt 256  Q
    ||||| ||||||||||||| ||||||||| |||||||||||| ||| |||  |||||| | ||| |||||||    
T  41694964 aatttgtttgtgaagagttatcattaaagacatatttgaacaatttagttggttctccttctataggctctt 41694893  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 20241876 - 20241933
Alignment:
Q  67 gtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttg 124  Q
    ||||||| | |||| ||||| |||||||||||| || ||||||||||||||| |||||    
T  20241876 gtttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttg 20241933  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 20251191 - 20251134
Alignment:
Q  67 gtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttg 124  Q
    ||||||| | |||| ||||| |||||||||||| || ||||||||||||||| |||||    
T  20251191 gtttggttcaatttgtttggttgttgggtgagtcaaaatagtgctcacaattagtttg 20251134  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 21861953 - 21862027
Alignment:
Q  57 atttggttcagtttggtccgatttatttggatgttgggtgagttaagatagtgctcacaattggtttgattgttt 131  Q
    ||||||||  ||||||| | |||||||||| | ||| |||||| || ||||| ||||||||||||||| ||||||    
T  21861953 atttggtttcgtttggttcaatttatttggtttttgagtgagtcaaaatagttctcacaattggtttgtttgttt 21862027  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 28063883 - 28063835
Alignment:
Q  23 ttcaatttgtcttggtttggttttgtttagattaatttggttcagtttg 71  Q
    |||||||||| |||||||| |||||||  | ||||||||||||||||||    
T  28063883 ttcaatttgtattggtttgattttgttcggtttaatttggttcagtttg 28063835  T

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