View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12032_high_1 (Length: 1176)

Name: NF12032_high_1
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12032_high_1
NF12032_high_1
[»] chr3 (21 HSPs)
chr3 (461-1087)||(4170092-4170714)
chr3 (15-402)||(4170768-4171154)
chr3 (15-305)||(50518760-50519047)
chr3 (17-315)||(37123491-37123778)
chr3 (15-206)||(14194152-14194340)
chr3 (15-95)||(14893260-14893340)
chr3 (15-223)||(25647888-25648093)
chr3 (22-205)||(33143630-33143813)
chr3 (36-120)||(41039462-41039546)
chr3 (25-119)||(14280230-14280323)
chr3 (15-91)||(32010121-32010197)
chr3 (16-311)||(28937400-28937681)
chr3 (212-314)||(14879547-14879649)
chr3 (15-92)||(25594179-25594256)
chr3 (25-119)||(48893034-48893128)
chr3 (37-86)||(1652569-1652617)
chr3 (26-91)||(37998891-37998956)
chr3 (35-91)||(46358073-46358129)
chr3 (105-157)||(46358167-46358219)
chr3 (33-77)||(47946049-47946092)
chr3 (24-71)||(14754963-14755010)
[»] chr2 (27 HSPs)
chr2 (15-310)||(7696077-7696371)
chr2 (15-236)||(13337449-13337660)
chr2 (15-180)||(4974990-4975155)
chr2 (15-180)||(4992898-4993063)
chr2 (15-314)||(37770324-37770612)
chr2 (15-314)||(10173250-10173547)
chr2 (15-253)||(12342992-12343215)
chr2 (15-312)||(34230314-34230610)
chr2 (189-312)||(16952230-16952350)
chr2 (189-312)||(17022895-17023015)
chr2 (189-312)||(17060201-17060321)
chr2 (16-92)||(41113412-41113488)
chr2 (15-94)||(41086475-41086554)
chr2 (22-92)||(4472276-4472346)
chr2 (32-82)||(22884802-22884852)
chr2 (15-81)||(33788296-33788362)
chr2 (18-94)||(29139624-29139700)
chr2 (15-105)||(29997265-29997355)
chr2 (15-94)||(33533415-33533500)
chr2 (35-82)||(27740331-27740378)
chr2 (212-314)||(41086664-41086767)
chr2 (15-81)||(42802427-42802496)
chr2 (15-85)||(25504559-25504629)
chr2 (189-314)||(14106368-14106490)
chr2 (37-72)||(40360652-40360687)
chr2 (16-86)||(1269791-1269861)
chr2 (32-85)||(44594018-44594071)
[»] chr4 (23 HSPs)
chr4 (15-314)||(38636905-38637203)
chr4 (15-314)||(41117639-41117937)
chr4 (106-310)||(49528187-49528390)
chr4 (22-311)||(16832698-16832988)
chr4 (99-304)||(25753293-25753499)
chr4 (15-314)||(19814888-19815190)
chr4 (15-312)||(22810844-22811128)
chr4 (16-87)||(42719494-42719565)
chr4 (15-92)||(28967208-28967285)
chr4 (17-86)||(48098645-48098714)
chr4 (28-94)||(25754206-25754272)
chr4 (147-306)||(19673219-19673377)
chr4 (25-92)||(2061513-2061580)
chr4 (143-314)||(48098444-48098618)
chr4 (15-84)||(46487621-46487690)
chr4 (16-168)||(49747785-49747937)
chr4 (37-85)||(43077307-43077355)
chr4 (18-61)||(9262807-9262850)
chr4 (16-71)||(52009179-52009234)
chr4 (34-92)||(39420726-39420784)
chr4 (24-81)||(35947987-35948044)
chr4 (17-79)||(20632170-20632233)
chr4 (37-75)||(16502053-16502091)
[»] chr5 (23 HSPs)
chr5 (15-310)||(8297583-8297880)
chr5 (18-314)||(26405222-26405515)
chr5 (15-304)||(26045634-26045924)
chr5 (18-207)||(7682770-7682960)
chr5 (33-157)||(30097601-30097725)
chr5 (15-94)||(25992332-25992411)
chr5 (15-185)||(10174921-10175089)
chr5 (24-255)||(14302124-14302356)
chr5 (24-92)||(13953928-13953996)
chr5 (212-314)||(7195109-7195210)
chr5 (23-182)||(33109881-33110035)
chr5 (25-157)||(7194982-7195113)
chr5 (15-96)||(33258560-33258641)
chr5 (12-91)||(5187276-5187355)
chr5 (17-77)||(27713421-27713481)
chr5 (37-85)||(31742504-31742552)
chr5 (15-85)||(8731278-8731348)
chr5 (9-79)||(23426646-23426716)
chr5 (54-119)||(37108105-37108170)
chr5 (35-83)||(24071952-24072000)
chr5 (15-111)||(7391668-7391766)
chr5 (22-92)||(4914177-4914247)
chr5 (43-72)||(34345831-34345860)
[»] chr7 (22 HSPs)
chr7 (16-314)||(24324470-24324767)
chr7 (15-120)||(42532930-42533035)
chr7 (18-139)||(16828774-16828894)
chr7 (15-206)||(33719183-33719375)
chr7 (190-314)||(8745264-8745388)
chr7 (18-119)||(16954795-16954895)
chr7 (24-109)||(39013558-39013643)
chr7 (15-71)||(6726090-6726146)
chr7 (15-71)||(48058343-48058399)
chr7 (25-207)||(1321011-1321192)
chr7 (25-92)||(6716417-6716484)
chr7 (15-86)||(36674809-36674880)
chr7 (24-87)||(44755906-44755968)
chr7 (45-91)||(3478683-3478729)
chr7 (15-80)||(28534175-28534240)
chr7 (15-86)||(8745469-8745539)
chr7 (33-70)||(22567781-22567818)
chr7 (180-314)||(34390075-34390206)
chr7 (15-71)||(47456744-47456800)
chr7 (143-314)||(6716535-6716707)
chr7 (35-82)||(13312180-13312227)
chr7 (1117-1153)||(4999813-4999850)
[»] scaffold0050 (1 HSPs)
scaffold0050 (15-314)||(36820-37117)
[»] chr8 (8 HSPs)
chr8 (16-183)||(17656408-17656575)
chr8 (25-259)||(10248246-10248482)
chr8 (16-91)||(12197747-12197822)
chr8 (16-91)||(12442175-12442250)
chr8 (214-314)||(17656872-17656972)
chr8 (53-92)||(2273760-2273799)
chr8 (31-92)||(8862308-8862370)
chr8 (32-82)||(9831691-9831741)
[»] chr1 (27 HSPs)
chr1 (30-168)||(34775129-34775267)
chr1 (18-119)||(27102489-27102589)
chr1 (15-314)||(31290692-31290989)
chr1 (15-94)||(9313011-9313090)
chr1 (35-207)||(32882583-32882757)
chr1 (23-164)||(46768437-46768579)
chr1 (22-242)||(11439698-11439919)
chr1 (16-94)||(4431006-4431084)
chr1 (16-244)||(10785133-10785359)
chr1 (23-85)||(32863225-32863287)
chr1 (15-87)||(376477-376549)
chr1 (217-312)||(41126348-41126443)
chr1 (125-312)||(16577374-16577560)
chr1 (15-82)||(37200485-37200552)
chr1 (24-119)||(52278589-52278682)
chr1 (18-80)||(17033939-17034001)
chr1 (15-91)||(9557241-9557317)
chr1 (32-91)||(38544404-38544463)
chr1 (46-107)||(16149093-16149155)
chr1 (35-81)||(46603705-46603751)
chr1 (36-85)||(50588964-50589014)
chr1 (16-92)||(49820488-49820565)
chr1 (34-85)||(19598990-19599042)
chr1 (15-83)||(41126122-41126190)
chr1 (15-50)||(7451932-7451967)
chr1 (16-91)||(27905766-27905840)
chr1 (36-83)||(42374526-42374573)
[»] chr6 (8 HSPs)
chr6 (15-314)||(20701468-20701773)
chr6 (15-157)||(15120273-15120415)
chr6 (15-94)||(3880283-3880362)
chr6 (154-314)||(3880405-3880568)
chr6 (22-119)||(6860338-6860436)
chr6 (15-83)||(17278133-17278201)
chr6 (37-77)||(26534424-26534464)
chr6 (15-69)||(13423718-13423772)
[»] scaffold0063 (1 HSPs)
scaffold0063 (16-314)||(58238-58537)
[»] scaffold1613 (1 HSPs)
scaffold1613 (32-91)||(683-742)
[»] scaffold1384 (1 HSPs)
scaffold1384 (40-183)||(1347-1494)
[»] scaffold0119 (1 HSPs)
scaffold0119 (16-86)||(41841-41911)


Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 461 - 1087
Target Start/End: Complemental strand, 4170714 - 4170092
Alignment:
Q  461 aaagacatccattagggcatgtatgtctaatagatctaataatgcatcaccaatacataatttttgtttacctttcttcatcctttcgtgaaaaaattaa 560  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  4170714 aaagacatccattagggcatgtatgtctaatagatctaataatgcatcaccaatatgtaatttttgtttacctttcttcctcctttcgtgaaaaaattaa 4170615  T
Q  561 tatgatctaatgaagtctttggtgacaaaagtgaatgaaaatgaactac----------------taaatgtaacaacacttaatatggagcttgttcat 644  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||                |||||||||||||||||||||||||||||||||||    
T  4170614 tatgatctaatgaagtctttggtgacaaaagtgaatgaatatgaactacattacgttaagcgaactaaatgtaacaacacttaatatggagcttgttcat 4170515  T
Q  645 catttacacattttaaatatcacttggaaatggaataaagtagctcatttgatcgtttctttgtttgtttgacgtttattgagcaataggattctcaaga 744  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4170514 catttacacattttaaatatcacttggaaatggaataaagtagctcatttgatagtttctttgtttgtttgacgtttattgagcaataggattctcaaga 4170415  T
Q  745 cggataatttgtttgggcgtgtaagctattcatgtcagattttataatttgtttcagtgattgtggtttggaggaaagtgttgttcatatannnnnnn-g 843  Q
    |||||||||                     |||||||||||||||||||||| || |||| ||||||||| |||||||||||| |||||||        |    
T  4170414 cggataatt---------------------catgtcagattttataatttgtgtcggtgactgtggtttgaaggaaagtgttgatcatatattttttttg 4170336  T
Q  844 ggattgtgcatattttttctccttagatttctctttgtccttttatgcaactttcatttttaattggataagaaagcttcatcacagtgcacgaaagttt 943  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4170335 ggattgtgcatattttttctccttagatttctctttgtccttttatgcaactttcatttttaattggataagaaagcttcatcacagtgcacgaaagttt 4170236  T
Q  944 catagttattaatcgacaccaagtcttttgaaggtaccacgtcttaatcatatatgcaactttcgcttttatggttgaaaattgggtcactttaatgata 1043  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4170235 catagttattaatcgacaccaagtcttttgaaggtaccacgtcttaatcatatatgcaactttcgcttttatggttgaaaattgggtcactttaatgata 4170136  T
Q  1044 taccacaatcgtgtgacagtcactttaacgaaattggcttgctg 1087  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  4170135 taccacaatcgtgtgacagtcactttaacgaaattggcctgctg 4170092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 15 - 402
Target Start/End: Complemental strand, 4171154 - 4170768
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4171154 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 4171055  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
    ||||||||  | |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4171054 aaaaaatatacgtcatcacctaaaatagactccttcacgaaaatgaccattgtataaatgatatccaaccatccatcgtcactactcacccccttctaaa 4170955  T
Q  215 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 314  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| | |||||| |||||||||||||| ||||| |||| ||||||||||||||| |||    
T  4170954 aacacccctcaaagtaaaactctcagtccttaacaccaaagctgagccacatctccaaagctcctaccc-aaagatcattaagcttccaccacctcccga 4170856  T
Q  315 atcgttttcattaattaagttcatctatttctgttaatttttatcctcaatatctaagggggaccaacattgcaggtgatccaccaaa 402  Q
     |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  4170855 ctcgttttcattagttaagttcatctatttctgttaatttttatcctcaatgtctaagggggaccaacattgcaggtgatccatcaaa 4170768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 15 - 305
Target Start/End: Original strand, 50518760 - 50519047
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |  ||||||| |||||||     
T  50518760 cagagactggtgaaactgagaatacaaacaaaaggtgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacccatgaggaccacaccca- 50518858  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
    | ||||||| | ||| ||||||||| ||||||||||||| | |  ||||||||| ||| |||||| ||| ||| |||||||||||||||| ||    |||    
T  50518859 acaaaatacacctcaccatctaaaacagactccttcacg-ataccaccactgtaaaaacgatatctaacgatccatcgtcactactcacctccaaagaaa 50518957  T
Q  215 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccacc 305  Q
    ||||||||| |||   ||| ||   |||||||||||||||| ||| | |||  |  ||| |||||| || |||||||||||||||||||||    
T  50518958 aacacccctaaaaaataaattcctcgtcctgaacaccaaagctgagccaca-atcaaaaactcctaaccaaaagaccattcagcttccacc 50519047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 17 - 315
Target Start/End: Complemental strand, 37123778 - 37123491
Alignment:
Q  17 gagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaa 116  Q
    ||||||| ||||||||||||||||||||||||||||| || |||| ||||||||| ||||||||||||||           |||| ||||||||||||      
T  37123778 gagaccgatgaaactgagaatacaaacaaaaggcgtcctacatagtcggaacacccgaaaataaacaccc-----------ttgaagacaacacccac-c 37123691  T
Q  117 aaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaa 214  Q
    ||||||| ||||| ||| ||||||||||| ||||||||||| |||||||||| ||| ||||||||  |||| || | ||||||||||||| ||    |      
T  37123690 aaaatacacatcaccatataaaatagacttcttcacgaaaacgaccactgtaaaaacgatatccaacaccacctgttgtcactactcaccgccaaagatg 37123591  T
Q  215 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 314  Q
    |||||||||| || | ||||||||||||| ||||| ||||| ||| | ||||| | ||||||| |  | |||||| ||| ||||||||||||||| ||||    
T  37123590 aacacccctccaaattaaactctcagtccagaacatcaaagctgagccacatc-gaaaagctcatgtctgaaagatcatacagcttccaccacctatcga 37123492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 14194340 - 14194152
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca-tcattgaggacaacaccca 113  Q
    |||||||| ||||||||||||| |||||||||||| | | ||||||||||||||| | ||||||||||| |||||||||| ||| ||||||| |||||||    
T  14194340 cagagaccagtgaaactgagaacacaaacaaaaggtgccttatataggcggaacatccgaaaataaacatcctaaaaacactca-tgaggaccacaccca 14194242  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccc 206  Q
    |  ||||||| | ||| || |||||| ||||||| ||||| ||||  |||||| || || |||||||||||||| ||||||||||||||||||    
T  14194241 c-caaaatacacgtcaccacctaaaacagactccatcacg-aaatcgccactgaat-aacgatatccaaccatccatcgtcactactcacccc 14194152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 14893340 - 14893260
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacat 95  Q
    ||||||| |||||||| |||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  14893340 cagagactggtgaaaccgagagtacaaacaaaagacgccgtatataggcggaacacctgaaaataaacaccctaaaaacat 14893260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 25648093 - 25647888
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    |||||| |||||||||| |||||||||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||    ||||||| ||||||||    
T  25648093 cagagatcggtgaaactaagaatacaaacaaaaggcgcagtatatagacggaacacccgaaaataaacaccctaaaaacacacatgaggaccacacccac 25647994  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
     ||| | ||   ||| ||  ||||| | ||||| ||||| |||  ||||||| | ||| |||||||||||||| ||| |||||||||||||||   ||||    
T  25647993 caaata-acatgtcaccacataaaacatactccatcacg-aaaccaccactg-aaaaacgatatccaaccatccatcatcactactcacccccaaataaa 25647897  T
Q  215 aacacccct 223  Q
    |||||||||    
T  25647896 aacacccct 25647888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 33143630 - 33143813
Alignment:
Q  22 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaat 121  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| ||||||  |   ||||| |||| |||| | |||     
T  33143630 cggtgaaactgagaatacaaccaaaaggcgtcatatataggcggaacacccgaaaa-aaacacccaaaaaactcccaagaggataacatccaccataaa- 33143727  T
Q  122 acgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa--ccatctatcgtcactactcaccc 205  Q
    || | ||| || |||||| | |||||||||||||||  ||||||| | ||| |||||||||  |||||  ||||||||||||||||    
T  33143728 acacgtcaccacctaaaacaaactccttcacgaaaaccaccactgaacaaacgatatccaaccccatccgtcgtcactactcaccc 33143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 36 - 120
Target Start/End: Complemental strand, 41039546 - 41039462
Alignment:
Q  36 atacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaa 120  Q
    ||||||| |||| || || ||||||||||||||||| |||||||||||||||||||||| |  ||| |||||||||||| |||||    
T  41039546 atacaaagaaaatgcatcatatataggcggaacaccagaaaataaacaccctaaaaacacccgtgaagacaacacccaccaaaaa 41039462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 14280230 - 14280323
Alignment:
Q  25 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 119  Q
    ||||||||| ||||||||  ||||||| ||||||||||||||||||| |||| ||||||| || |||| |||  |||||||||||||||| ||||    
T  14280230 tgaaactgataatacaaattaaaggcgccgtatataggcggaacacccgaaagtaaacactctgaaaatatc-ctgaggacaacacccactaaaa 14280323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 32010197 - 32010121
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    |||||| ||||||  | |||||||||| | ||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  32010197 cagagatcggtgattcagagaatacaacctaaaagcgtcgtatataggcggaatacctgaaaataaacaccttaaaa 32010121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 311
Target Start/End: Original strand, 28937400 - 28937681
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 115  Q
    |||||||||||||| ||||||||||||      ||| |||||||| |||||||||| |||||||||||||||||||||| |    | ||||||||||||     
T  28937400 agagaccggtgaaattgagaatacaaa------gcgccgtatataagcggaacacccgaaaataaacaccctaaaaacacccca-atgacaacacccacc 28937492  T
Q  116 aaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttct-a 212  Q
    ||||       ||  || |||||| |||| ||||||||||| ||||||||||| ||| ||||||||  |||| | |||| ||||||||||| ||   | |    
T  28937493 aaaa-------tc--cacctaaaacagaccccttcacgaaagtgaccactgtaaaaacgatatccaataccacccatcgccactactcacctccaagtaa 28937583  T
Q  213 aaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 311  Q
    ||||||||||| |||   ||||||  || |||||||| ||||| ||| | |||||   ||||||||| || |||| | |||||||||||||||| ||||    
T  28937584 aaaacacccctaaaaaacaaactcctagacctgaacatcaaag-tgagccacatccaaaaagctcctccctgaaacatcattcagcttccaccatctct 28937681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 314
Target Start/End: Complemental strand, 14879649 - 14879547
Alignment:
Q  212 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 311  Q
    |||||||||||||||| | |||||| ||| | |||||||||||   || | ||||| | |||||||||| | |||||| |||| ||||||||||||||||    
T  14879649 aaaaacacccctcaaaattaaactcccagacttgaacaccaaacccgagccacatccgaaaagctcctatctgaaagatcattaagcttccaccacctct 14879550  T
Q  312 cga 314  Q
    |||    
T  14879549 cga 14879547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 92
Target Start/End: Original strand, 25594179 - 25594256
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    |||||| ||||||  | ||||||| ||| |||| ||||||||||||||||||||||| |||| |||||||| ||||||    
T  25594179 cagagatcggtgattcagagaataaaaataaaatgcgtcgtatataggcggaacacccgaaagtaaacaccataaaaa 25594256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 119
Target Start/End: Original strand, 48893034 - 48893128
Alignment:
Q  25 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 119  Q
    |||||||||||||||||||||| |  | |||||||| | |||||| | ||||||||||||  |||||||| |  ||| |||||||||||| ||||    
T  48893034 tgaaactgagaatacaaacaaacgatgccgtatataagaggaacatccgaaaataaacactttaaaaacacccctgaagacaacacccaccaaaa 48893128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 86
Target Start/End: Original strand, 1652569 - 1652617
Alignment:
Q  37 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 86  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||||||    
T  1652569 tacaaactaaaggcgtcgtatataggcggaacacccg-aaataaacaccc 1652617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 37998891 - 37998956
Alignment:
Q  26 gaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    |||||||||||||||||||||| | | |||||||||||||||   | ||||||||||||| |||||    
T  37998891 gaaactgagaatacaaacaaaatgtgccgtatataggcggaatgtccgaaaataaacaccttaaaa 37998956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 46358073 - 46358129
Alignment:
Q  35 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    ||||||||| |||| ||  ||||||||||| |||||||||||||||||||| |||||    
T  46358073 aatacaaactaaagacgctgtatataggcgaaacacctgaaaataaacaccttaaaa 46358129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 157
Target Start/End: Original strand, 46358167 - 46358219
Alignment:
Q  105 caacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 157  Q
    ||||||||||||| ||||  |||||||| |||||| |||||||||||||||||    
T  46358167 caacacccacaaagaataaacatcatcacctaaaacagactccttcacgaaaa 46358219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 47946092 - 47946049
Alignment:
Q  33 agaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 77  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  47946092 agaatacaaacgaa-ggcgtcgtatataggcggaacacctgaaaa 47946049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 14754963 - 14755010
Alignment:
Q  24 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 71  Q
    |||||| ||||||||||||| ||||||| |||| ||||||||||||||    
T  14754963 gtgaaattgagaatacaaactaaaggcgccgtacataggcggaacacc 14755010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 6e-68; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 6e-68
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 7696371 - 7696077
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    ||||||||| ||||| |||||||||||||||||||   |||||||||||||||||||  |||||||||||| |||||||| |   |||||||||||||||    
T  7696371 cagagaccgatgaaattgagaatacaaacaaaaggaaccgtatataggcggaacacccaaaaataaacaccttaaaaacacccccgaggacaacacccac 7696272  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
     |||| ||| ||||| || |||||||| ||||||||||||||| ||||| |||| ||||||||| ||||||   ||||||||||||||| |||||  |||    
T  7696271 caaaa-tacacatcaccacctaaaataaactccttcacgaaaacgaccaatgtaaaaatgatattcaaccactcatcgtcactactcactcccttagaaa 7696173  T
Q  215 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctc 310  Q
    ||||||||| ||| ||||||||   |||||||||||||||||||| | |||||  |||| |||||| |||||||| ||||||||||||||||||||    
T  7696172 aacacccctaaaaataaaactcctggtcctgaacaccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctc 7696077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 13337660 - 13337449
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  ||||||||||||||||    
T  13337660 cagagaccggtgaaacagagaatacaaacaaaaggcgtcgtatataggtggaacacctgaaaataaacaccctaaaaacacccctgaggacaacacccac 13337561  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
       || ||| ||||  || |      ||||||| ||||||||| |||||| ||| ||| ||||||| | || | |||||||||||||||||||||  |||    
T  13337560 -ttaattacacatcgccacc------agactccctcacgaaaa-gaccacggta-aaacgatatcc-atcacccatcgtcactactcacccccttagaaa 13337471  T
Q  215 aacacccctcaaagtaaaactc 236  Q
    ||||||||||||| ||||||||    
T  13337470 aacacccctcaaaataaaactc 13337449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 4975155 - 4974990
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 113  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||| ||||||||    
T  4975155 cagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacaccca 4975056  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcc 180  Q
    |  ||| ||| || || || |||||| ||||| ||||||||||| |||||||||| ||| |||||||    
T  4975055 c-caaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4974990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 15 - 180
Target Start/End: Complemental strand, 4993063 - 4992898
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 113  Q
    |||||||  |||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||| ||||||||    
T  4993063 cagagactagtgaaactaagaatacaaactaaaggcgtcgtatataggctgaacacccgaaaataaacaccctgaaaaacatccttgaggataacaccca 4992964  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcc 180  Q
    |  ||| ||| || || || |||||| ||||| ||||||||||| |||||||||| ||| |||||||    
T  4992963 c-caaattacacaccaccacctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatatcc 4992898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 37770324 - 37770612
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    |||||| |||||||  |||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||| || |||||| | |||||||    
T  37770324 cagagatcggtgaatatgagaatacaaacaa---gcgtcgtatataggcggaacacccgaaaataaacaccctaaaaacacca-tgaggataccacccac 37770419  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttcta 212  Q
      ||||| | | ||| || |||||| |||||||||||||||||  |||||| ||        |||||  |||| |  |||||||||||| |||||    |    
T  37770420 -caaaatccacgtcaccacctaaaacagactccttcacgaaaaccaccactata--------atccaacaccacccgtcgtcactactcgcccccaaaga 37770510  T
Q  213 aaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 312  Q
    ||||  ||||||||| | |||||| ||| ||||||||||||||  || | || || | ||||||| || | |||||| ||||||||||||| ||||||||    
T  37770511 aaaaaccccctcaaaattaaactcacagacctgaacaccaaagccgagccacctcagaaaagctcatatctgaaagatcattcagcttccaacacctctc 37770610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 10173250 - 10173547
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacaccca 113  Q
    |||||| |||||||||  | ||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| | | |  ||||||||| |||||    
T  10173250 cagagatcggtgaaacatataatacaaactaaaagcgttgtatataggcggaacacctgaaaataaacaccctaaaagatacctctgaggacaataccca 10173349  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttct 211  Q
       |||||||   |||    |||||| ||||  ||||| ||||| ||| |||||| ||| ||||| ||  ||||   |||||||||||||||||    |     
T  10173350 -tcaaaatacatgtcacggcctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcaccc----ca 10173444  T
Q  212 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 311  Q
    || || || ||||||| | |||||||||||||| |||||||||| ||| | ||||| | ||||||| ||  | ||||| |||||| ||||||||||||||    
T  10173445 aagaatactcctcaaaattaaactctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctct 10173544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 15 - 253
Target Start/End: Complemental strand, 12343215 - 12342992
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    |||||||||  |||| ||||||||||||| |||| |||| || | |||||||||||| |||||||||||||||            |||||||||| |||     
T  12343215 cagagaccgacgaaattgagaatacaaactaaagacgtcttacaaaggcggaacacccgaaaataaacaccct------------gaggacaacatccat 12343128  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
     |||| ||| | ||| || |||||| ||||||||||||||||| |||| ||||| ||| ||||||||||||   |||||||||||||||||||  | | |    
T  12343127 caaaa-tacacgtcaccacctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatccaaccactcatcgtcactactcaccccc--caaga 12343031  T
Q  215 aacacccctcaaagtaaaactctcagtcctgaacaccaa 253  Q
    |||||||||||||   |||||| ||||||| ||||||||    
T  12343030 aacacccctcaaaaataaactcccagtcctcaacaccaa 12342992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 15 - 312
Target Start/End: Complemental strand, 34230610 - 34230314
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    |||||| ||||||| ||| ||||||||||||||| || |||||||||||||||||||  |||||||||| | |||||||| |  | || |||||| ||||    
T  34230610 cagagatcggtgaa-ctgcgaatacaaacaaaagacgccgtatataggcggaacaccaaaaaataaacatcgtaaaaacaccccttagaacaacatccac 34230512  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacc-cccttct 211  Q
      ||||||| | ||| ||||| ||| |||||| | |||||||| ||||||| || ||| ||||||||||  || |  |||  |||||||||| ||         
T  34230511 -caaaatacacgtcaccatct-aaacagactcttccacgaaaacgaccactataaaaacgatatccaacaacacccgtcgcaactactcacctccaaaga 34230414  T
Q  212 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 311  Q
    |||||||||| | |||  |||| | |||||||| |||||||||||||| | ||||||| ||||||| ||   |||||| |||||||||||||||||||||    
T  34230413 aaaaacacccataaaaaaaaaaat-tcagtcctaaacaccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctct 34230315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 189 - 312
Target Start/End: Original strand, 16952230 - 16952350
Alignment:
Q  189 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 288  Q
    |||||||||||||||||||    || |||||||||| || | |||||| ||||||| |||||||||||||| | ||||| | |||||||||| |||||||    
T  16952230 atcgtcactactcaccccca---aagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaag 16952326  T
Q  289 accattcagcttccaccacctctc 312  Q
    | | || |||||||||||||||||    
T  16952327 atcgtttagcttccaccacctctc 16952350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 189 - 312
Target Start/End: Original strand, 17022895 - 17023015
Alignment:
Q  189 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 288  Q
    |||||||||||||||||||    || |||||||||| || | |||||| ||||||| |||||||||||||| | ||||| | |||||||||| |||||||    
T  17022895 atcgtcactactcaccccca---aagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaag 17022991  T
Q  289 accattcagcttccaccacctctc 312  Q
    | | || |||||||||||||||||    
T  17022992 atcgtttagcttccaccacctctc 17023015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 189 - 312
Target Start/End: Original strand, 17060201 - 17060321
Alignment:
Q  189 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 288  Q
    |||||||||||||||||||    || |||||||||| || | |||||| ||||||| |||||||||||||| | ||||| | |||||||||| |||||||    
T  17060201 atcgtcactactcaccccca---aagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatccgaaaagctcctatccgaaag 17060297  T
Q  289 accattcagcttccaccacctctc 312  Q
    | | || |||||||||||||||||    
T  17060298 atcgtttagcttccaccacctctc 17060321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 41113412 - 41113488
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    |||||||||||||||||||||||||||| |||| | | |||||||||||||||| | ||||||||| ||||||||||    
T  41113412 agagaccggtgaaactgagaatacaaactaaagacattgtatataggcggaacatccgaaaataaataccctaaaaa 41113488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 41086475 - 41086554
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 94  Q
    |||||||| ||||||||||| ||||||| |||| || ||||||||||||| |||||| ||||||||| ||||||||||||    
T  41086475 cagagaccagtgaaactgagcatacaaagaaaaagcatcgtatataggcgaaacacccgaaaataaataccctaaaaaca 41086554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 4472346 - 4472276
Alignment:
Q  22 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    ||||||| | |||||||||||| ||||||||||||||||| ||||||| | ||||||||||||| ||||||    
T  4472346 cggtgaatcagagaatacaaactaaaggcgtcgtatatagacggaacatccgaaaataaacaccataaaaa 4472276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 22884802 - 22884852
Alignment:
Q  32 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 82  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22884802 gagaatacaaactaaaggcgtcgtatataggcggaacacccgaaaataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 33788296 - 33788362
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 81  Q
    ||||||||||||| || |||||||||||| ||||||| |||||||| |||||||||| |||||||||    
T  33788296 cagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacacccgaaaataaa 33788362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 29139624 - 29139700
Alignment:
Q  18 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 94  Q
    ||||||||||||||||| ||||||| ||||||||||||||||  | |||||||  ||||||||| ||| ||||||||    
T  29139624 agaccggtgaaactgaggatacaaataaaaggcgtcgtatattagtggaacactcgaaaataaataccttaaaaaca 29139700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 29997355 - 29997265
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggac 105  Q
    ||||||||| ||||| ||| |||| |||||||||||  |||||||| |||||||| | ||||||||||| ||||||| ||||  |||||||    
T  29997355 cagagaccgatgaaattgaaaataaaaacaaaaggcaccgtatataagcggaacatccgaaaataaacatcctaaaatcatccctgaggac 29997265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 33533415 - 33533500
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatatag------gcggaacacctgaaaataaacaccctaaaaaca 94  Q
    ||||||| ||||||||| || |||||||||||||||| | |||||||      ||||||||| |||||||||||||||||||||||    
T  33533415 cagagactggtgaaactaaggatacaaacaaaaggcgccatatataggcggaagcggaacacttgaaaataaacaccctaaaaaca 33533500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 27740378 - 27740331
Alignment:
Q  35 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 82  Q
    ||||||||| |||||||||||||||||| |||||||| ||||||||||    
T  27740378 aatacaaactaaaggcgtcgtatataggtggaacacccgaaaataaac 27740331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 41086664 - 41086767
Alignment:
Q  212 aaaaacacccctcaaagtaaaactctcagtcctgaa-caccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctc 310  Q
    |||||||||||||||| | |||||| || ||||||| | ||||||| ||   |||||   ||||||| || |||||||| ||||||||||||||||||||    
T  41086664 aaaaacacccctcaaaatcaaactcgcaatcctgaaactccaaagtagagtcacatccaaaaagctcttatccgaaagatcattcagcttccaccacctc 41086763  T
Q  311 tcga 314  Q
    ||||    
T  41086764 tcga 41086767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 81
Target Start/End: Complemental strand, 42802496 - 42802427
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatata---ggcggaacacctgaaaataaa 81  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||   |||||||||||  ||||||||    
T  42802496 cagagatcagtgaaactgagaatacaaacaaaaggtgtcgtatatatacggcggaacacccaaaaataaa 42802427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 25504559 - 25504629
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 85  Q
    |||| ||||||||  | |||||||||||||||||||| ||||||||| || ||||||  ||||||||||||    
T  25504559 cagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 25504629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 314
Target Start/End: Original strand, 14106368 - 14106490
Alignment:
Q  189 atcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaag 288  Q
    |||||||||||||||||||    || ||||||||||||| |||||||||||| | | |||||| ||| ||| | ||||  | ||||||| || ||||| |    
T  14106368 atcgtcactactcaccccca---aagaacacccctcaaaataaaactctcagacttcaacacccaagctgagccacattcgtaaagctcttaaccgaatg 14106464  T
Q  289 accattcagcttccaccacctctcga 314  Q
    | ||| || ||||||| |||||||||    
T  14106465 atcatacaacttccacaacctctcga 14106490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 72
Target Start/End: Original strand, 40360652 - 40360687
Alignment:
Q  37 tacaaacaaaaggcgtcgtatataggcggaacacct 72  Q
    |||||||||||| |||||||||||||||||||||||    
T  40360652 tacaaacaaaagacgtcgtatataggcggaacacct 40360687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 1269861 - 1269791
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 86  Q
    |||| ||||||||| ||||||||||||  |||||||||||| | ||||| ||||||  | |||||||||||    
T  1269861 agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacacccaagaataaacaccc 1269791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 85
Target Start/End: Complemental strand, 44594071 - 44594018
Alignment:
Q  32 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 85  Q
    |||||||||||||||||||||||| |||||  |||| | | |||||||||||||    
T  44594071 gagaatacaaacaaaaggcgtcgtgtatagatggaatatccgaaaataaacacc 44594018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 5e-59; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 38636905 - 38637203
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaa-aacatcattgaggacaacaccca 113  Q
    ||||||||||||||| ||||| ||||||||| ||||| ||||| ||||||||||||||||||||||||||| |||| || | |   ||||||||||||||    
T  38636905 cagagaccggtgaaaatgagactacaaacaagaggcgccgtat-taggcggaacacctgaaaataaacaccttaaataaaacccccgaggacaacaccca 38637003  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaa 213  Q
    | |||| |||   ||| || |||||| | |||||||||||||||  ||| ||||| |||||||||||||||| | |||||||||||||||||||||  ||    
T  38637004 cgaaaa-tacatgtcaccacctaaaacaaactccttcacgaaaacaaccgctgtaaaaatgatatccaaccacccatcgtcactactcacccccttagaa 38637102  T
Q  214 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 313  Q
    |||||||||| | | |||||||| || || ||||||||||||||||||  | || ||||||||| || | |||||| |||||||||||||||||||||||    
T  38637103 aaacaccccttatactaaaactcccaatcttgaacaccaaagttgaaccgcctcggcaaagctcttatctgaaagatcattcagcttccaccacctctcg 38637202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 41117639 - 41117937
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaa-aacatcattgaggacaacaccca 113  Q
    ||||||| ||||||| ||||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||    
T  41117639 cagagacaggtgaaattgagactacaaacaagaggcatcgtatataggcggaacacccgaaaataaacaccctaaataacaccat-gaggacaacaccca 41117737  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaa 213  Q
    | |||| |||  |||| || ||| || |||||| | ||||||||  |||  |||| ||| |||||||||||| | ||||||| |||||||||| ||  ||    
T  41117738 ccaaaa-tacatatcaccacctagaacagactcatgcacgaaaacaaccgttgtaaaaacgatatccaaccacccatcgtcattactcacccctttagaa 41117836  T
Q  214 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 313  Q
    |||||||||||| | |||||||| |  || |||||||||||  ||| | || || ||||||||||||  ||||||| |||||||||||||||||||||||    
T  41117837 aaacacccctcagaataaaactcccgatcatgaacaccaaacctgagccacctccgcaaagctcctattcgaaagatcattcagcttccaccacctctcg 41117936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 106 - 310
Target Start/End: Complemental strand, 49528390 - 49528187
Alignment:
Q  106 aacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcaccc 205  Q
    ||||||||| ||||| || | |||||| |||||||||||||||||| || |  ||||||| |  ||| ||||| |||||||| ||| |||||||||||||    
T  49528390 aacacccaccaaaaa-acacgtcatcacctaaaatagactccttcatgacaccgaccactattaaaacgatattcaaccatccatcttcactactcaccc 49528292  T
Q  206 ccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccacc 305  Q
    ||||  |||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||| |||||||| ||| |||||||| |||||| ||||||||    
T  49528291 ccttagaaaaacacccctcaaaataaaactctcagtcttgaacaccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccacc 49528192  T
Q  306 acctc 310  Q
    |||||    
T  49528191 acctc 49528187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 22 - 311
Target Start/End: Original strand, 16832698 - 16832988
Alignment:
Q  22 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaat 121  Q
    ||||||||||||||||||||||||||||||  | ||||||||||||||||  ||||||||||||||||||||     |||||||||||||||| ||| |     
T  16832698 cggtgaaactgagaatacaaacaaaaggcgctgcatataggcggaacaccaaaaaataaacaccctaaaaactctcctgaggacaacacccaccaaataa 16832797  T
Q  122 acgcatcatcatctaaaatagactccttcacg-aaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaaaca 218  Q
    |||  ||| || |||||| | | |||| |||| |||| |||| ||||| ||| ||||||||  |||| |  |||||||||||||||||     |||||||    
T  16832798 acg--tcaccacctaaaacatattcctgcacgaaaaacgaccgctgtaaaaaagatatccaacaccacccgtcgtcactactcaccccaaagaaaaaaca 16832895  T
Q  219 cccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 311  Q
    ||||||||| | |||||| ||||| |||||||||||||||| | ||||| | ||||||| || || ||||| ||||||||||| | |||||||    
T  16832896 cccctcaaaattaaactcacagtcttgaacaccaaagttgagccacatccgaaaagctcatatcccaaagatcattcagcttcaatcacctct 16832988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 6e-28
Query Start/End: Original strand, 99 - 304
Target Start/End: Complemental strand, 25753499 - 25753293
Alignment:
Q  99 tgaggacaacacccacaaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcac 196  Q
    |||||||||||||||| |||| |||   |||||| |||||| | ||||||||||||||| | |||||||| ||  | ||||||||  |||  ||||||||    
T  25753499 tgaggacaacacccaccaaaa-tacaagtcatcacctaaaacaaactccttcacgaaaagggccactgtaaaatcggtatccaacatcattcatcgtcac 25753401  T
Q  197 tactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattca 296  Q
    |||||||||||    |||||||||||||||| | ||||| ||||||||||||| ||||||||||| |||||   |||||| ||  |||||||| ||||||    
T  25753400 tactcacccccaaagaaaaacacccctcaaaattaaactttcagtcctgaacatcaaagttgaaccacatccaaaaagcttctctccgaaagatcattca 25753301  T
Q  297 gcttccac 304  Q
    ||||||||    
T  25753300 gcttccac 25753293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 19814888 - 19815190
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaac-aaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacaccc 112  Q
    ||||||||| | |||| |||| ||||||| ||||||||| ||||||| || |||||||  |||||||||| | ||||| |||   |  ||||||||||||    
T  19814888 cagagaccgataaaacagagagtacaaactaaaaggcgttgtatataagcagaacacccaaaaataaacatcataaaagacactttcaaggacaacaccc 19814987  T
Q  113 ac-aaaaaatacg-catcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa--ccatctatcgtcactactcaccccct 208  Q
    || |||||| ||| || ||  | || ||| ||||  |||||||||||||||||| ||| |||||||||||||  |||||  | ||||||||||||||||     
T  19814988 accaaaaaacacgtcaccagtacctcaaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcaccccca 19815087  T
Q  209 tctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacc 308  Q
       || |||||  |||||  | |||||||||||||| |||||||||||| | | ||||| | |||| ||||| |||||||| |||| ||||||||||| |    
T  19815088 ---aagaacacttctcaagattaaactctcagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatc 19815184  T
Q  309 tctcga 314  Q
    ||||||    
T  19815185 tctcga 19815190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 15 - 312
Target Start/End: Original strand, 22810844 - 22811128
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    ||||||| ||||||| |||||||||||||||| |||| |||||||| |||||| | | |||| |||||||||||           ||||||  |||||||    
T  22810844 cagagactggtgaaattgagaatacaaacaaa-ggcgccgtatataagcggaatatccgaaagtaaacacccta-----------gaggacctcacccac 22810931  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
     |||| ||| | ||| |  |||||| ||||| ||||||||||  |||||||||| ||| ||||||| |||||| |||||||||||||||||||    |||    
T  22810932 caaaa-tacacgtcacctcctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcctaccatccatcgtcactactcacccccaaagaaa 22811030  T
Q  215 aacacccctcaaag-taaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 312  Q
    || ||| || |||| |||||| ||| |||||||||||||||| ||| | ||||| ||||| |||||| ||  |||||  |||| |||||||||||||||    
T  22811031 aa-acctctaaaagataaaaccctccgtcctgaacaccaaagctgagccacatccgcaaaactcctaaccagaagacatttcaacttccaccacctctc 22811128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 42719565 - 42719494
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 87  Q
    ||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||||||||||||||||    
T  42719565 agagaccggtgaaactgagaatacaaacaaaagacgccgtatataagcggaaaacctgaaaataaacaccct 42719494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 15 - 92
Target Start/End: Complemental strand, 28967285 - 28967208
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    |||||| ||||||||| || ||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||    
T  28967285 cagagatcggtgaaacagataatacaaacgaaaggcgctgtatataggcggaacacctgaaaataaacaccctaaaaa 28967208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 48098714 - 48098645
Alignment:
Q  17 gagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 86  Q
    |||| |||||||||||| |||||||||||||| ||  |||||||||||||||||| ||||||||||||||    
T  48098714 gagatcggtgaaactgaaaatacaaacaaaagacgcagtatataggcggaacacccgaaaataaacaccc 48098645  T

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Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 25754272 - 25754206
Alignment:
Q  28 aactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 94  Q
    ||||||||||||||| |||| ||| ||||||||| ||||||| ||||||||||||||| ||||||||    
T  25754272 aactgagaatacaaataaaaagcgccgtatatagacggaacatctgaaaataaacaccataaaaaca 25754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 306
Target Start/End: Complemental strand, 19673377 - 19673219
Alignment:
Q  147 cttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcct 244  Q
    |||||||||||||||||||||| ||   |||||||||  ||||  ||||||||||||||||||    || ||||| ||||||| | ||||||||||||||    
T  19673377 cttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcaccccca---aagaacactcctcaaaattaaactctcagtcct 19673281  T
Q  245 gaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccacca 306  Q
     |||||||||||| | | ||||| | |||| || || || ||| | |||| |||||||||||    
T  19673280 caacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccacca 19673219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 2061513 - 2061580
Alignment:
Q  25 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    ||||||||||||||||||||| |||  | |||||||||||||||| |||| ||||||||| |||||||    
T  2061513 tgaaactgagaatacaaacaagaggtcttgtatataggcggaacatctgataataaacacactaaaaa 2061580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 314
Target Start/End: Complemental strand, 48098618 - 48098444
Alignment:
Q  143 actccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaa-acacccctcaaagtaaaactctca 239  Q
    |||| ||||| |||| |||||||||| ||| ||||||||  || | |  ||||||||||||||||||    |||| |||||||| |||   |||||| ||    
T  48098618 actctttcacaaaaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaaaatacacccctaaaaaataaactccca 48098519  T
Q  240 gtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 314  Q
    ||| | |||||||||||||| | ||||| | |||||||||| | |||||| | |||| |||||||||||||||||    
T  48098518 gtcttaaacaccaaagttgagccacatccgaaaagctcctatctgaaagatcgttcatcttccaccacctctcga 48098444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 46487690 - 46487621
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacac 84  Q
    |||||||||||||    |||||||||||| |||||| |||||||||||||||||| | ||||||||||||    
T  46487690 cagagaccggtgatttagagaatacaaactaaaggcatcgtatataggcggaacatccgaaaataaacac 46487621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 49747937 - 49747785
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacacccac 114  Q
    |||||| ||||||| | || ||||||||||||| | ||||||||| |||||||| |  |||||||||||| | ||||||| |  ||||||||||||||||    
T  49747937 agagactggtgaaatttagcatacaaacaaaagacatcgtatatatgcggaacatccaaaaataaacaccataaaaaacacctctgaggacaacacccac 49747838  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgta 168  Q
      ||||| |   ||| || |||||| |||||| |||||||||| ||||| ||||    
T  49747837 -caaaattcatgtcaccacctaaaacagactctttcacgaaaacgaccattgta 49747785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 43077355 - 43077307
Alignment:
Q  37 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 85  Q
    |||||||||||  |||||||||||||| |||||||||||||||||||||    
T  43077355 tacaaacaaaatacgtcgtatataggcagaacacctgaaaataaacacc 43077307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 9262850 - 9262807
Alignment:
Q  18 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatatag 61  Q
    |||||| ||||||||||||||||||||||||||| |||||||||    
T  9262850 agaccgatgaaactgagaatacaaacaaaaggcgccgtatatag 9262807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 52009234 - 52009179
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 71  Q
    ||||| ||||||||||||| || |||||| |||||| |||||||||||||||||||    
T  52009234 agagatcggtgaaactgagcatgcaaacataaggcgccgtatataggcggaacacc 52009179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 39420726 - 39420784
Alignment:
Q  34 gaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    ||||| ||| |||||| ||||||||||||||||||||| |||||| |||||| ||||||    
T  39420726 gaatataaataaaaggtgtcgtatataggcggaacacccgaaaatgaacaccataaaaa 39420784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 35947987 - 35948044
Alignment:
Q  24 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 81  Q
    ||||| ||||||||||||||||||| || | |||||| |||||||||| |||||||||    
T  35947987 gtgaatctgagaatacaaacaaaagacgccatatataagcggaacacccgaaaataaa 35948044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 20632170 - 20632233
Alignment:
Q  17 gagaccggtgaaactgagaatacaaac-aaaaggcgtcgtatataggcggaacacctgaaaata 79  Q
    |||||||||||  | |||||||||||| ||||||||| |||||||||||||| ||| |||||||    
T  20632170 gagaccggtgattcagagaatacaaactaaaaggcgttgtatataggcggaatacccgaaaata 20632233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 16502091 - 16502053
Alignment:
Q  37 tacaaacaaaaggcgtcgtatataggcggaacacctgaa 75  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  16502091 tacaaacaaaaggcgctgtatataggcggaacacctgaa 16502053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 5e-53; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 15 - 310
Target Start/End: Complemental strand, 8297880 - 8297583
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    |||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||| |  |||||| |||| ||||    
T  8297880 cagagaccggtgaaactgagaatacaaa-aaaaggcgttgtacataggcggaacacctgaaaatacacaccctaaaaacacccctgaggataacatccac 8297782  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcac----ccccttc 210  Q
     |||| ||| ||||| || |||||| | ||||||||| ||||| ||||| |||| ||| ||| |||||||| |||||||||||||||||    ||||       
T  8297781 caaaa-tacacatcaccacctaaaacacactccttcaagaaaaagaccaatgtaaaaacgatttccaaccacctatcgtcactactcactcacccccaaa 8297683  T
Q  211 taaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctc 310  Q
     |||||||||||||||| | |||||| |  || |||||||||||   || | ||||| | |||||||||| ||||||||||||||| |||||||||||||    
T  8297682 gaaaaacacccctcaaaattaaactccccatcatgaacaccaaaaccgagccacatccgaaaagctcctatccgaaagaccattcaacttccaccacctc 8297583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 26405222 - 26405515
Alignment:
Q  18 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |  ||||||||||| ||||  |    
T  26405222 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatatagtcggaacacccgaaaataaacaccttaaaaacacccctgaggacaacaaccac-ca 26405320  T
Q  118 aaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaaaac 217  Q
    |||||| | ||| || |||||| ||||| ||||| | |||||| ||||||  |||  |||||||| || | |||||||||||||| || |    ||||||    
T  26405321 aaatacacgtcaccacctaaaacagacttcttcatggaaatga-cactgttaaaaccatatccaatcacccatcgtcactactca-cctcaaagaaaaac 26405418  T
Q  218 acccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 314  Q
    || | ||||| | ||||||   ||||||||||||||||| || | || || | ||||||| || ||||||||||| |||||||||||||||||||||    
T  26405419 actcatcaaaattaaactcctcgtcctgaacaccaaagtcgagccacctccgaaaagctcatatccgaaagaccaatcagcttccaccacctctcga 26405515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 15 - 304
Target Start/End: Original strand, 26045634 - 26045924
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacaccca 113  Q
    ||||||||||||||  |||| |||||||||||||||| ||||||||| ||||||| |  ||||||||||||||||||| |  |  |||||||||||||||    
T  26045634 cagagaccggtgaagttgagcatacaaacaaaaggcgccgtatatagacggaacatccaaaaataaacaccctaaaaaacgcccctgaggacaacaccca 26045733  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttct 211  Q
    | |||| | | | ||| || |||||| ||||| ||||| |||||||||||| ||| ||| || |||||||  |  | ||||||||||||||||||         
T  26045734 ccaaaatt-cacgtcaccacctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaag- 26045831  T
Q  212 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccac 304  Q
    |||||||||||||||| | ||||||||| |||| ||||||||||||||   || || | ||||||| || | |||||| || |||||||||||    
T  26045832 aaaaacacccctcaaaattaaactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatatctgaaagatcaatcagcttccac 26045924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 7682960 - 7682770
Alignment:
Q  18 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 117  Q
    |||| ||||||||||||||||||||  ||||||||||||||||||||||||| | |||||||| ||||| ||||| |    |||| |||||||||||  |    
T  7682960 agacgggtgaaactgagaatacaaattaaaggcgtcgtatataggcggaacatccgaaaataagcacccaaaaaatacttatgagaacaacacccac-ca 7682862  T
Q  118 aaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaa--tgatatccaaccatctatcgtcactactcaccccc 207  Q
    |||||| ||||| || ||||||||||||| ||||| |||| |||||| ||| |||  | || ||  |||||| |||||||||||||| ||||    
T  7682861 aaatacacatcaccacctaaaatagactctttcacaaaaacgaccaccgtaaaaactttatctcgcaccatccatcgtcactactcaacccc 7682770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 30097725 - 30097601
Alignment:
Q  33 agaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacccta-aaaacatcattgaggacaacacccacaaaaaatacgcatcatc 131  Q
    ||||||||||| |||| || ||||||||||||||||||| |||||||||||||||| ||||||||  ||| ||||||||||||  ||||||| | ||| |    
T  30097725 agaatacaaactaaagacgccgtatataggcggaacacccgaaaataaacaccctaaaaaacatccatgatgacaacacccac-caaaatacacgtcacc 30097627  T
Q  132 atctaaaatagactccttcacgaaaa 157  Q
    | |||||| |||||||||||||||||    
T  30097626 acctaaaacagactccttcacgaaaa 30097601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 25992411 - 25992332
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 94  Q
    ||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||    
T  25992411 cagagaccggtgaaaatgataatacaaacaaaaggcgccgtatatatgcggaacacccgacaataaacaccctaaaaaca 25992332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 15 - 185
Target Start/End: Complemental strand, 10175089 - 10174921
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||||||  |||||||| ||||||||| |||||||||| |   |||||||||||||||    
T  10175089 cagagaccggtgaaattaagaatacaaacaaaaggcatcgtatataggcaaaacacctg-aaataaacatcctaaaaacacctccgaggacaacacccac 10174991  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaacca 185  Q
      ||| ||| | | | || |||||| ||||||||||   |||| |||||| ||| ||| ||||||||||||    
T  10174990 -caaagtacacgtaaccacctaaaacagactccttctaaaaaacgaccacggtaaaaacgatatccaacca 10174921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 24 - 255
Target Start/End: Original strand, 14302124 - 14302356
Alignment:
Q  24 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatac 123  Q
    |||||| ||| |||| |||||| || || |||||||||  ||||||||  |||||||| | |||||||||| |  ||| ||||||||||||  |||||||    
T  14302124 gtgaaattgaaaatataaacaagagacgccgtatatagaaggaacacccaaaaataaaaatcctaaaaacacccctgatgacaacacccac-caaaatac 14302222  T
Q  124 gcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaaacaccc 221  Q
     | ||| || |||||| ||| |||||| |||||| ||||| |||| ||| ||||||||  |||| || ||||||||||||| ||||    ||||| ||||    
T  14302223 acgtcaccacctaaaacagattccttcgcgaaaacgaccaatgtaaaaacgatatccaacaccacctgtcgtcactactcatccccaaagaaaaataccc 14302322  T
Q  222 ctcaaagtaaaactctcagtcctgaacaccaaag 255  Q
    |||||| | |||||| || |||||||||||||||    
T  14302323 ctcaaaattaaactcccactcctgaacaccaaag 14302356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 13953928 - 13953996
Alignment:
Q  24 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    |||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  13953928 gtgaaactgagagtacaaactaaaggcgccgtatataggcggaacacctgaaaataaacaccttaaaaa 13953996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 212 - 314
Target Start/End: Original strand, 7195109 - 7195210
Alignment:
Q  212 aaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctct 311  Q
    ||||||| |||||||| |||||||| |||||||||| ||||||| ||| | ||||| |||||||||||| || |||||  ||||||||||||| ||||||    
T  7195109 aaaaacaaccctcaaaataaaactc-cagtcctgaataccaaagctgagccacatccgcaaagctcctatccaaaagattattcagcttccacgacctct 7195207  T
Q  312 cga 314  Q
    |||    
T  7195208 cga 7195210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 33109881 - 33110035
Alignment:
Q  23 ggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaata 122  Q
    |||||||||||||||||||||||||| ||  |||||  | || |||||| ||||||||||||  |||||||| | |  | |||||||||||| |||| ||    
T  33109881 ggtgaaactgagaatacaaacaaaagacgctgtata--gccgaaacacccgaaaataaacactttaaaaacaccct--atgacaacacccaccaaaa-ta 33109975  T
Q  123 cgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaa 182  Q
    | | |||||| |||||| | || |||||||||||| |||||||||| ||| |||||||||    
T  33109976 cacgtcatcacctaaaacaaaccccttcacgaaaacgaccactgtaaaaacgatatccaa 33110035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 7194982 - 7195113
Alignment:
Q  25 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacg 124  Q
    |||||||||||||| | |||||| | ||||| |||| |||||||| |  ||||||||||||||||||||| |  || |||||||||||||  |||||||     
T  7194982 tgaaactgagaatatagacaaaatgagtcgtttatatgcggaacatccaaaaataaacaccctaaaaacaccgctgcggacaacacccac-caaaataca 7195080  T
Q  125 catcatcatctaaaatagactccttcacgaaaa 157  Q
    | ||| || |||||| |||||||||||| ||||    
T  7195081 cgtcaccacctaaaacagactccttcacaaaaa 7195113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 33258560 - 33258641
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatc 96  Q
    ||||||||||||||| ||  |||||||| |||||||| |||||||| | | |||||| ||||||||||||| ||||||||||    
T  33258560 cagagaccggtgaaattggaaatacaaataaaaggcgccgtatatatgtgaaacacccgaaaataaacaccataaaaacatc 33258641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 5187355 - 5187276
Alignment:
Q  12 gagcagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    ||||||||| |||||||| ||||||||||||||||||||| || ||||||  | | |||| ||||||||||||| |||||    
T  5187355 gagcagagatcggtgaaattgagaatacaaacaaaaggcgccgcatatagatgaagcacccgaaaataaacaccataaaa 5187276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 27713481 - 27713421
Alignment:
Q  17 gagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 77  Q
    |||||| ||||||||||| |||||||| ||||||| | ||||||||||||||||| |||||    
T  27713481 gagaccagtgaaactgaggatacaaacgaaaggcgccatatataggcggaacacccgaaaa 27713421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 31742552 - 31742504
Alignment:
Q  37 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 85  Q
    ||||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  31742552 tacaaacaaaaggcgccgtatataggcggaacacccgaaaacaaacacc 31742504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 8731348 - 8731278
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 85  Q
    |||| ||||||||  | |||||||||||||||||||| ||||||||| || ||||||  ||||||||||||    
T  8731348 cagaaaccggtgattcagagaatacaaacaaaaggcgccgtatatagacgaaacacccaaaaataaacacc 8731278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 79
Target Start/End: Complemental strand, 23426716 - 23426646
Alignment:
Q  9 gaggagcagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaata 79  Q
    ||||| |||||||||||||  | ||||||||||  |||||| | ||||||||||||||||||| |||||||    
T  23426716 gaggaacagagaccggtgattcagagaatacaactaaaaggtgccgtatataggcggaacacccgaaaata 23426646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 119
Target Start/End: Complemental strand, 37108170 - 37108105
Alignment:
Q  54 gtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 119  Q
    |||||||||||||||| |  ||||||||||||||||||||| |  |||||| ||||||||| ||||    
T  37108170 gtatataggcggaacatcaaaaaataaacaccctaaaaacacccatgaggataacacccaccaaaa 37108105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 24071952 - 24072000
Alignment:
Q  35 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 83  Q
    ||||||||| || |||| ||||||||||||||||||| |||||||||||    
T  24071952 aatacaaactaagggcgccgtatataggcggaacacccgaaaataaaca 24072000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 111
Target Start/End: Original strand, 7391668 - 7391766
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaaca--aaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacc 111  Q
    ||||||||||||||| ||||||||||||    ||| | |  |||||||||||||| |||||||| || ||| |||||||||| |  |||||||||||||    
T  7391668 cagagaccggtgaaaatgagaatacaaagtgtaaatgtgctgtatataggcggaaaacctgaaagtacacaacctaaaaacacccatgaggacaacacc 7391766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 4914177 - 4914247
Alignment:
Q  22 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    |||||||||||||||||| ||  ||||| |||||||||| |||||||| | || ||||||| | |||||||    
T  4914177 cggtgaaactgagaatactaattaaaggtgtcgtatatatgcggaacatccgataataaaccctctaaaaa 4914247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 72
Target Start/End: Original strand, 34345831 - 34345860
Alignment:
Q  43 caaaaggcgtcgtatataggcggaacacct 72  Q
    ||||||||||||||||||||||||||||||    
T  34345831 caaaaggcgtcgtatataggcggaacacct 34345860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 3e-51; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 16 - 314
Target Start/End: Original strand, 24324470 - 24324767
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 115  Q
    ||||| || ||||| |||||||||||||||||  |||| |||||||  | |||||| |||||||||||| ||||||||| | ||||||||||||| |||     
T  24324470 agagatcgatgaaagtgagaatacaaacaaaaaacgtcatatatagctgaaacacccgaaaataaacactctaaaaacacccttgaggacaacactcacc 24324569  T
Q  116 aaaaatacgcatcatcatctaaaatagactccttcacgaaaat-gaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
    |||| ||| | ||| ||  ||||| |||||||||||||||||  ||||| ||||  || |||||||||||| | ||||||||||||||||||     |||    
T  24324570 aaaa-tacacgtcaccacttaaaacagactccttcacgaaaaacgaccattgtaagaacgatatccaaccacc-atcgtcactactcacccctaaagaaa 24324667  T
Q  215 aacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 314  Q
    ||||||||||||| |||||||||| |||||||||||||||| ||| | ||| | | |||||||||| |||||||| |||||||||||||||||| |||||    
T  24324668 aacacccctcaaaataaaactctccgtcctgaacaccaaagctgagccacagccgaaaagctcctaaccgaaagatcattcagcttccaccacccctcga 24324767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 42532930 - 42533035
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    |||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||  | |||| ||||||||||||    
T  42532930 cagagaccggtggaactgagaatacaaccaaaaggcgccgtatataggcggaacacctggaaataaacaccctaaaaactcccttgatgacaacacccac 42533029  T
Q  115 aaaaaa 120  Q
    ||||||    
T  42533030 aaaaaa 42533035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 16828774 - 16828894
Alignment:
Q  18 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 117  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||| |||| ||| | |  ||| || |||| ||||  |    
T  16828774 agaccggtgaaactgagaatacaaacaaaatgcgccgtatataggcggaacacccgaaaataaacatcctagaaatacccctgaagaaaacaaccac-ca 16828872  T
Q  118 aaatacgcatcatcatctaaaa 139  Q
    |||||| |||||||||||||||    
T  16828873 aaatacacatcatcatctaaaa 16828894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 15 - 206
Target Start/End: Complemental strand, 33719375 - 33719183
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca-tcattgaggacaacaccca 113  Q
    |||||| ||||||||||||||||||||||||| ||||  | |||||||||||||| | |||| ||||||||||||||||| ||| |||||||||||||||    
T  33719375 cagagatcggtgaaactgagaatacaaacaaacggcgctgaatataggcggaacatc-gaaagtaaacaccctaaaaacactca-tgaggacaacaccca 33719278  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcac-gaaaatgaccactgtataaatgatatccaac-catct-atcgtcactactcacccc 206  Q
    |  |||||||  |||| |  ||||||  |||||||||||  |||| |||| ||||| |||||||||||||| |  || ||||||||||||||||||    
T  33719277 c-caaaatacctatcaccgcctaaaaccgactccttcacaaaaaacgacctctgtaaaaatgatatccaacactactcatcgtcactactcacccc 33719183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 190 - 314
Target Start/End: Complemental strand, 8745388 - 8745264
Alignment:
Q  190 tcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaaga 289  Q
    ||||||||||||||||||    |||||||||||||||| | |||||| ||||| |||||||||||| ||| | ||||| | |||||||||| | ||||||    
T  8745388 tcgtcactactcacccccaaagaaaaacacccctcaaaattaaactcccagtcttgaacaccaaagctgagccacatccgaaaagctcctatctgaaaga 8745289  T
Q  290 ccattcagcttccaccacctctcga 314  Q
     ||| |||||||||| |||||||||    
T  8745288 tcatgcagcttccacaacctctcga 8745264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 16954895 - 16954795
Alignment:
Q  18 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 117  Q
    |||||||||||||||||| |||||| |||||||  ||||||||||||||||| | |||||||||||| ||||||||| |  ||| || |||| |||||||    
T  16954895 agaccggtgaaactgaga-tacaaataaaaggcaccgtatataggcggaacatccgaaaataaacacgctaaaaacacccctgaagaaaacaaccacaaa 16954797  T
Q  118 aa 119  Q
    ||    
T  16954796 aa 16954795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 39013643 - 39013558
Alignment:
Q  24 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaaca 109  Q
    |||||||||||||||||||||| || ||| |||||||| ||||| |||| |||||||||||||| |||||| |  |||||||||||    
T  39013643 gtgaaactgagaatacaaacaagagacgttgtatatagacggaatacctaaaaataaacaccctgaaaacaactatgaggacaaca 39013558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 6726090 - 6726146
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 71  Q
    |||||| ||||||||||||||||||||||||||  || |||||||||||||||||||    
T  6726090 cagagatcggtgaaactgagaatacaaacaaaaaacgccgtatataggcggaacacc 6726146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 48058343 - 48058399
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 71  Q
    |||||||||||||||  |||||||||||| ||||||||| |||||||||||||||||    
T  48058343 cagagaccggtgaaatagagaatacaaacgaaaggcgtcatatataggcggaacacc 48058399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 207
Target Start/End: Complemental strand, 1321192 - 1321011
Alignment:
Q  25 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaatacg 124  Q
    ||||||||||||||||||||  | ||  |||||||||||||||| || |||||||||||||||||||||  | |||| |||| || ||||  |||||||     
T  1321192 tgaaactgagaatacaaacacgacgc--cgtatataggcggaactcccgaaaataaacaccctaaaaac-cccttgaagacaccatccac-caaaataca 1321097  T
Q  125 catcatcatctaaaatagactcc-ttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcaccccc 207  Q
    ||||| || |||||| |||| || |||||||||   ||||||||| ||| |||||| |  ||||   |||||||||||||||||||    
T  1321096 catcaccacctaaaacagacccctttcacgaaagcaaccactgtaaaaacgatatctaataccactcatcgtcactactcaccccc 1321011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 6716417 - 6716484
Alignment:
Q  25 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    |||||| |||||||||||  ||||| | ||||||||  ||||||||||||||||||||||||||||||    
T  6716417 tgaaacagagaatacaaattaaaggggccgtatataaccggaacacctgaaaataaacaccctaaaaa 6716484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 36674880 - 36674809
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 86  Q
    |||||| |||||||| ||   |||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  36674880 cagagatcggtgaaattggagatacaaacaaaaggcgtcgtatataggcggaatatccgaaaataaacaccc 36674809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 44755968 - 44755906
Alignment:
Q  24 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 87  Q
    |||||||| || ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||    
T  44755968 gtgaaactaagcatacaaacaaaaggcgttgtatataggcgaaacacct-aaaataaacaccct 44755906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 91
Target Start/End: Complemental strand, 3478729 - 3478683
Alignment:
Q  45 aaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  3478729 aaaggcgccgtatataggcggaacacccgaaaataaacaccctaaaa 3478683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 28534175 - 28534240
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataa 80  Q
    |||||||||||||    ||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  28534175 cagagaccggtgatttagagaatacaaataaaaggcgccgtatataggcggaacacccgaaaataa 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 8745539 - 8745469
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 86  Q
    ||||||| ||||||||||| |||| |||||| || || ||||||||||||||||||| ||||| ||||||||    
T  8745539 cagagactggtgaaactgaaaatagaaacaagagacgccgtatataggcggaacacccgaaaa-aaacaccc 8745469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 22567781 - 22567818
Alignment:
Q  33 agaatacaaacaaaaggcgtcgtatataggcggaacac 70  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22567781 agaatacaaacaaaaggcgccgtatataggcggaacac 22567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 180 - 314
Target Start/End: Complemental strand, 34390206 - 34390075
Alignment:
Q  180 caaccatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcct 279  Q
    |||||| | |||||||||||||| ||||    || ||||||||||||| |||||||| ||| |   |||||| ||||||| | |||| || |||||||||    
T  34390206 caaccacccatcgtcactactcatcccca---aagaacacccctcaaaataaaactcccagactacaacacccaagttgagccacatttgaaaagctcct 34390110  T
Q  280 acccgaaagaccattcagcttccaccacctctcga 314  Q
    |  |||| || ||| |||||||||| |||||||||    
T  34390109 aatcgaatgaacatgcagcttccacaacctctcga 34390075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 47456744 - 47456800
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacc 71  Q
    |||||||||||||||| || ||||||||  |||||||  ||||||||||||||||||    
T  47456744 cagagaccggtgaaacagaaaatacaaatgaaaggcgcagtatataggcggaacacc 47456800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 314
Target Start/End: Original strand, 6716535 - 6716707
Alignment:
Q  143 actccttcacgaaaatgaccactgtataaatgatatc-ca-accatctatcgtcactactcacccccttctaaaaacacccctcaaagtaaaactctcag 240  Q
    ||||||||||||||| |||||||||| ||| | |||| || |||| | || ||||||||||||||||  |   ||||||||| |||| | |||||| ||     
T  6716535 actccttcacgaaaacgaccactgtaaaaacggtatctcacaccacccattgtcactactcacccccaac--gaaacaccccacaaaattaaactcccat 6716632  T
Q  241 tcctgaacaccaaagttgaactacatctgcaaagctcctacccg-aaagaccattcagcttccaccacctctcga 314  Q
    |||| |||||||||| ||| | ||||| | |||  || || ||| ||||| || |||||||||||||||||||||    
T  6716633 tcctcaacaccaaagctgagccacatccggaaaaatcttatccgaaaagatcaatcagcttccaccacctctcga 6716707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 13312227 - 13312180
Alignment:
Q  35 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 82  Q
    ||||||||| |||||| | |||||||||||||||||| ||||||||||    
T  13312227 aatacaaactaaaggctttgtatataggcggaacacccgaaaataaac 13312180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1117 - 1153
Target Start/End: Original strand, 4999813 - 4999850
Alignment:
Q  1117 aaaacaaaacgatattcattca-tcaaattaatataat 1153  Q
    |||||||||||||||||||||| |||||||||||||||    
T  4999813 aaaacaaaacgatattcattcattcaaattaatataat 4999850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 93; Significance: 1e-44; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 15 - 314
Target Start/End: Complemental strand, 37117 - 36820
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 113  Q
    ||||||||||||||||||| |||||||||||||| ||  |||||||||||||||| | ||||||||||||| | ||||||| |  ||||||| |||||||    
T  37117 cagagaccggtgaaactgataatacaaacaaaagacgctgtatataggcggaacatccgaaaataaacaccataaaaaacacccatgaggaccacaccca 37018  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaa 213  Q
     | ||||||| | ||| || |||||| ||||||||||||| |||  ||||||||| ||| || ||||||||||| | |||||||||||||||||    ||    
T  37017 -acaaaatacacgtcaccacctaaaacagactccttcacg-aaaccaccactgtaaaaacgacatccaaccatccaccgtcactactcacccccaaagaa 36920  T
Q  214 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 313  Q
    |||||||||| |||  | ||| | | |||||||||||||||| ||| | |||   | |||||||||| ||||||||||||||| |||||||||| |||||    
T  36919 aaacacccct-aaaaaataaccccccgtcctgaacaccaaagctgagccacaatcgaaaagctcctaaccgaaagaccattcaacttccaccacatctcg 36821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 9e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 17656408 - 17656575
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 115  Q
    |||||||||||||| |||  ||| |||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| | |||||||||||||||||     
T  17656408 agagaccggtgaaattgaacatataaacaaaaggcgtcgtatatagacggaacacccgaaaattaacaccctaaaaacacccttgaggacaacacccac- 17656506  T
Q  116 aaaaatacgcatcatcatctaaaatagactccttcacg-aaaatgaccactgtataaatgatatccaac 183  Q
     ||||| | | ||| ||||||||| ||||||||||| | |||| |||||||| | ||| ||||||||||    
T  17656507 caaaattcacgtcaccatctaaaacagactccttcaagaaaaacgaccactgcaaaaacgatatccaac 17656575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 6e-31
Query Start/End: Original strand, 25 - 259
Target Start/End: Original strand, 10248246 - 10248482
Alignment:
Q  25 tgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccct-aaaaacatcattgaggacaacacccacaaaaaata 122  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||| |||| ||||||| | ||||||| | ||||||||||||||| |  ||||||    
T  10248246 tgaaactgagaatacaacctaaaggcgtcgtatataggcggaacaccctaaaaaaaaacaccttaaaaaacacccttgaggacaacacccgc-caaaata 10248344  T
Q  123 cgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaac--catctatcgtcactactcacccccttcta-aaaacac 219  Q
    | | ||| || |||||| | ||||||||||||||| |||||||||| ||| || |||| ||  || | |||||||||||||||||||  | |  ||||||    
T  10248345 cacgtcaccacctaaaacaaactccttcacgaaaacgaccactgtaaaaacgacatcccacaacacccatcgtcactactcaccccc--caacgaaacac 10248442  T
Q  220 ccctcaaagtaaaactctcagtcctgaacaccaaagttga 259  Q
    || ||||| | ||||||| |||||| ||||||||||||||    
T  10248443 ccgtcaaaattaaactctaagtcctcaacaccaaagttga 10248482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 12197747 - 12197822
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||    
T  12197747 agagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaa 12197822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 12442175 - 12442250
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    ||||| ||||||| | |||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||    
T  12442175 agagatcggtgaatcagagaatacaaactaaaggcgtcgtctataggcggaacacgggaaaataaacaccctaaaa 12442250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 17656872 - 17656972
Alignment:
Q  214 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 313  Q
    |||||||||||||| | |||||| || || |||||||||||||||| | || |||| ||||||||||   |||||| ||||||||||||||||||| |||    
T  17656872 aaacacccctcaaaattaaactcccaatcatgaacaccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcg 17656971  T
Q  314 a 314  Q
    |    
T  17656972 a 17656972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 2273760 - 2273799
Alignment:
Q  53 cgtatataggcggaacacctgaaaataaacaccctaaaaa 92  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  2273760 cgtataaaagcggaacacctgaaaataaacaccctaaaaa 2273799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 92
Target Start/End: Original strand, 8862308 - 8862370
Alignment:
Q  31 tgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccctaaaaa 92  Q
    ||||| ||||||||||||||| ||||||||| ||||||| ||  |||||||||||| ||||||    
T  8862308 tgagagtacaaacaaaaggcgccgtatatagacggaacatccgaaaaataaacaccataaaaa 8862370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 82
Target Start/End: Original strand, 9831691 - 9831741
Alignment:
Q  32 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 82  Q
    |||||||||||| |||| |||||||||||||| || |||| ||||||||||    
T  9831691 gagaatacaaactaaagacgtcgtatataggccgaccacccgaaaataaac 9831741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 9e-30; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 34775267 - 34775129
Alignment:
Q  30 ctgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacacccacaaaaaatacgcatc 128  Q
    |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| | ||||| | || ||||||||||||||||  ||||||| | ||    
T  34775267 ctgagaatacaaactaaaggcgccgtatataggcggaacacccgaaaataaacaccttaaaaaataccaatgaggacaacacccac-caaaatacacgtc 34775169  T
Q  129 atcatctaaaatagactccttcacgaaaatgaccactgta 168  Q
    |||| |||||| ||||||||||||||||| ||| ||||||    
T  34775168 atcacctaaaacagactccttcacgaaaacgacaactgta 34775129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 27102589 - 27102489
Alignment:
Q  18 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaa 117  Q
    |||| |||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||| ||    
T  27102589 agactggtgaacctgagaatacaaacaaaaggtgccgtatataggcggaacacccgaaaataaacaccctaaaaacacca-tgaggacaacacccaccaa 27102491  T
Q  118 aa 119  Q
    ||    
T  27102490 aa 27102489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 31290692 - 31290989
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    ||||||| ||||| ||||||||||||||||| ||||    ||| ||| ||||||||| ||||||||||||| |||||||| |  |||||||||  |||      
T  31290692 cagagactggtgagactgagaatacaaacaagaggcactatatgtagacggaacacccgaaaataaacaccataaaaacacccctgaggacaattccctt 31290791  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
     | |  ||| ||||| || |||||  |||||||||| |||||| |||||||||| |||||||| ||||||||| ||||||||||||||||| |    |||    
T  31290792 cata--tacacatcaccacctaaatcagactccttcgcgaaaacgaccactgtaaaaatgatagccaaccatccatcgtcactactcaccctcaaagaaa 31290889  T
Q  215 aacacccct-caaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 313  Q
    |||||||||  ||| ||||   |||| ||  ||||||||||| ||| | ||||| | |||||||||| |||||||| ||  || ||||||||||||||||    
T  31290890 aacacccctaaaaaataaacggctca-tctagaacaccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcg 31290988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 9313011 - 9313090
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 94  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9313011 cagagaccggtgaaacttataatacaatcaaaaggcgtcgtatataggcggaacacccgaaaataaacaccctaaaaaca 9313090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 35 - 207
Target Start/End: Complemental strand, 32882757 - 32882583
Alignment:
Q  35 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaacacccacaaaaaatacgcatcatcat 133  Q
    ||||||||| ||||||| ||||||||||| ||||||| ||||||||||||||||||| ||| |   |||||||||||||||  ||||||  ||||| |      
T  32882757 aatacaaactaaaggcgccgtatataggcagaacacccgaaaataaacaccctaaaagacacccccgaggacaacacccac-caaaatatacatcaccgc 32882659  T
Q  134 ctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcaccccc 207  Q
    ||||||  |||||||||||||||| || ||||||| | | ||||||||  |||| | |||||||||||||||||||    
T  32882658 ctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcaccccc 32882583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 23 - 164
Target Start/End: Complemental strand, 46768579 - 46768437
Alignment:
Q  23 ggtgaaactgagaatacaaacaaaaggcgtc-gtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacacccacaaaaaa 120  Q
    ||||||| |||| |||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||| || |   ||||||||||||||| ||||     
T  46768579 ggtgaaattgagcatacaaacaaaaggcgcccgtatgtaggcggaacacccgaaaataaacaccctaaaaaacacccccgaggacaacacccaccaaaat 46768480  T
Q  121 tacgcatcatcatctaaaatagactccttcacgaaaatgaccac 164  Q
    | | | ||| || |||||| ||||||||||||||||| ||||||    
T  46768479 t-cacgtcaccacctaaaacagactccttcacgaaaacgaccac 46768437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 11439698 - 11439919
Alignment:
Q  22 cggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaaat 121  Q
    |||||||| ||||||||||||||||||||| | ||||||| ||||||| | ||||||||||||||||||| |  |  ||| ||||||| ||||  |||||    
T  11439698 cggtgaaaatgagaatacaaacaaaaggcgacatatatagacggaacatccgaaaataaacaccctaaaatc-cccctgaagacaacatccac-caaaat 11439795  T
Q  122 acgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactact-cacccccttctaaaaaca 218  Q
    || | ||| || |||||| |||  |||||||||||   ||||| ||| ||||||||||||  ||||  ||||||||||||| |||||||    |||||||    
T  11439796 acacgtcaccacctaaaacagatcccttcacgaaagcaaccaccgtaaaaatgatatccaacaccacttatcgtcactactccacccccaaagaaaaaca 11439895  T
Q  219 cccctcaaagtaaaactctcagtc 242  Q
    ||||||| | | |||||| |||||    
T  11439896 cccctcagaattaaactcccagtc 11439919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 4431084 - 4431006
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggc-ggaacacctgaaaataaacaccctaaaaaca 94  Q
    |||||||||||||| ||||||||||||||||||||| |||||| |||| ||||||||| ||||| |||||||||||||||    
T  4431084 agagaccggtgaaattgagaatacaaacaaaaggcgccgtataaaggcgggaacacctaaaaat-aacaccctaaaaaca 4431006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 10785133 - 10785359
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaa-catcattgaggacaacacccac 114  Q
    |||||| ||| ||||||||||||||||| |||  || |||| | || |||||||||  || ||||||||| |||||| || | ||||||||||||||||     
T  10785133 agagacgggtaaaactgagaatacaaactaaaaacgccgtacaaagtcggaacacccaaatataaacaccttaaaaaacacccttgaggacaacacccat 10785232  T
Q  115 aaaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatccaaccatctatcgtcactactcacccccttctaaa 214  Q
     |||| |||   | ||||  ||||| ||||||||||||||||| |||  ||| | ||| |||||||||||| | |||||||||||||| |||   | | |    
T  10785233 caaaa-tacatgttatcacttaaaacagactccttcacgaaaacgacatctgaaaaaacgatatccaaccacccatcgtcactactcatccc--gcaaga 10785329  T
Q  215 aacacccctcaaagtaaaactctcagtcct 244  Q
    |||||||||||||   ||||||||||||||    
T  10785330 aacacccctcaaaaataaactctcagtcct 10785359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 32863225 - 32863287
Alignment:
Q  23 ggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacacc 85  Q
    ||||||| ||||||||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  32863225 ggtgaaaatgagaatacaaactaaatgtgtcgtatataggcggaacacctgaaaataaacacc 32863287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 376477 - 376549
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct 87  Q
    ||||||| | |||||| |||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||    
T  376477 cagagacggatgaaacagagaatacaaagtaaaggcgccgtatataggcagaacacctgaaaataaacaccct 376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 312
Target Start/End: Original strand, 41126348 - 41126443
Alignment:
Q  217 cacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 312  Q
    |||||||| || | |||||||||||||| | |||||||||||| | ||||||| |||||||||| || ||||| | ||||||||||| ||||||||    
T  41126348 cacccctctaaatgaaactctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctc 41126443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 312
Target Start/End: Complemental strand, 16577560 - 16577374
Alignment:
Q  125 catcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaaaaacacccc 222  Q
    |||||||| |||||| |||||| |||||||||| |||||||  | ||||||||||||  |||||  |||||| |||||||| ||     || ||||||||    
T  16577560 catcatcacctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaa---aagaacacccc 16577464  T
Q  223 tcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctc 312  Q
    || ||   ||||| ||||||   | |||||||||||| | ||||| | ||||||||||  | ||||| ||||||||||||||||||||||    
T  16577463 tctaaaagaaactttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctc 16577374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 37200552 - 37200485
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaac 82  Q
    ||||||||||||| || |||||||||||| |||| | |||||||||||||||||| | ||||||||||    
T  37200552 cagagaccggtgataccgagaatacaaactaaagacatcgtatataggcggaacatccgaaaataaac 37200485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 52278682 - 52278589
Alignment:
Q  24 gtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 119  Q
    ||||||| |||||||||| | || |||| | ||||||||||||||||||||||||||||||| |||| ||| ||  ||||||||||||||| ||||    
T  52278682 gtgaaacagagaatacaagctaa-ggcgccatatataggcggaacacctgaaaataaacaccttaaagacacca-cgaggacaacacccaccaaaa 52278589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 17034001 - 17033939
Alignment:
Q  18 agaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataa 80  Q
    ||||||||||  | || |||||||||||||||||||||||||| |||||||||| ||||||||    
T  17034001 agaccggtgattcagataatacaaacaaaaggcgtcgtatataagcggaacacccgaaaataa 17033939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 9557317 - 9557241
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    |||||||||||||| ||||||||||||| ||||  | |||||||||  || |||||| ||||||||||||| |||||    
T  9557317 cagagaccggtgaatctgagaatacaaataaaaaacatcgtatataaacgaaacacccgaaaataaacaccttaaaa 9557241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 38544404 - 38544463
Alignment:
Q  32 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    |||||||||||| |||| ||||||||||| | |||||||| ||||||||||||| |||||    
T  38544404 gagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 38544463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 16149155 - 16149093
Alignment:
Q  46 aaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa-acatcattgaggacaa 107  Q
    |||||| ||||||||||||||||||  ||||||||||||||||||| ||| | ||||||||||    
T  16149155 aaggcgccgtatataggcggaacacgcgaaaataaacaccctaaaagacaaccttgaggacaa 16149093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 46603751 - 46603705
Alignment:
Q  35 aatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaa 81  Q
    |||||||||||||| ||| |||||||||||||||||| |||||||||    
T  46603751 aatacaaacaaaagacgttgtatataggcggaacacccgaaaataaa 46603705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 50588964 - 50589014
Alignment:
Q  36 atacaaacaaaaggcgtcgtatataggcggaacacctgaa-aataaacacc 85  Q
    |||||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  50588964 atacaaacgaaaggcgccgtatataggcggaacacctgaagaataaacacc 50589014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 49820565 - 49820488
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca-cctgaaaataaacaccctaaaaa 92  Q
    ||||| ||||||| | |||||||||||| |||| |||| ||| ||||||||||| || ||||||||||||| ||||||    
T  49820565 agagatcggtgaatcagagaatacaaaccaaagacgtcatatgtaggcggaacacccggaaaataaacaccataaaaa 49820488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 19599042 - 19598990
Alignment:
Q  34 gaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaa-taaacacc 85  Q
    ||||||||  |||||||| ||||||||||||||||||||||||| ||||||||    
T  19599042 gaatacaataaaaaggcgccgtatataggcggaacacctgaaaagtaaacacc 19598990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 41126122 - 41126190
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 83  Q
    ||||||||| |||  | |||||||||||| |||||| |||||||||||  ||||||| |||||||||||    
T  41126122 cagagaccgatgattcagagaatacaaactaaaggcatcgtatataggtagaacacccgaaaataaaca 41126190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 50
Target Start/End: Original strand, 7451932 - 7451967
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggc 50  Q
    ||||||||||||||||||||||||||||||| ||||    
T  7451932 cagagaccggtgaaactgagaatacaaacaagaggc 7451967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 91
Target Start/End: Complemental strand, 27905840 - 27905766
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    ||||||||||||| | |||| ||||||| | |||||||||||||||| |||||| |  |||||||||||| |||||    
T  27905840 agagaccggtgaatcagagactacaaactagaggcgtcgtatataggtggaaca-caaaaaataaacaccataaaa 27905766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 42374573 - 42374526
Alignment:
Q  36 atacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 83  Q
    ||||||||||| |||| | ||||||||||||||||| |||||||||||    
T  42374573 atacaaacaaagggcgccatatataggcggaacacccgaaaataaaca 42374526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 4e-29; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 4e-29
Query Start/End: Original strand, 15 - 314
Target Start/End: Original strand, 20701468 - 20701773
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccac 114  Q
    |||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||| || |||||| |   ||||||||||||||     
T  20701468 cagagatcggtgaaactgagaatacaaacaaaaggcgctgtatataggcggaacacctggaaataaacacact-aaaacacccacgaggacaacacccat 20701566  T
Q  115 aaaa----aatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcaccccc- 207  Q
     |||    || || | ||| || ||| || |||| | |||||||||   ||||||||| ||| ||||||||  || | | |||||||||||||||||||     
T  20701567 caaaccctaaaacacttcaccacctataacagacccattcacgaaagcaaccactgtaaaaacgatatccaatactacccatcgtcactactcaccccca 20701666  T
Q  208 ttctaaaaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccac 307  Q
        |||||||||| | |||   ||||||  |||| |||||| ||||||||| | ||||  | |||||||||| |||||||| |||||||||||||| ||    
T  20701667 aaaaaaaaacaccctttaaaaacaaactcctagtcttgaacaacaaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactac 20701766  T
Q  308 ctctcga 314  Q
    |||||||    
T  20701767 ctctcga 20701773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 15120273 - 15120415
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccct-aaaaacatcattgaggacaacaccca 113  Q
    ||||||||||| ||||||||||||||||| |||| || ||||| ||||| ||||| |||| |||||||||||| |||||||||  ||||||||||| |||    
T  15120273 cagagaccggtaaaactgagaatacaaactaaagacgacgtatgtaggcagaacatctgacaataaacaccctaaaaaacatccatgaggacaacatcca 15120372  T
Q  114 caaaaaatacgcatcatcatctaaaatagactccttcacgaaaa 157  Q
    |  ||||||| ||||| || |||||| |||||| ||||| ||||    
T  15120373 c-caaaatacacatcaccacctaaaacagactcattcacaaaaa 15120415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 3880283 - 3880362
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaaca 94  Q
    ||||||||||||||||||| |||||||||||||||   |||||||| ||||||||||  |||||||||||||||||||||    
T  3880283 cagagaccggtgaaactgaaaatacaaacaaaaggttccgtatataagcggaacaccaaaaaataaacaccctaaaaaca 3880362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 154 - 314
Target Start/End: Original strand, 3880405 - 3880568
Alignment:
Q  154 aaaatgaccactgtataaatgatatccaac--catctatcgtcactactcaccccct-tctaaaaacacccctcaaagtaaaactctcagtcctgaacac 250  Q
    |||| ||||||| || ||| ||||||||||  ||||| |||||||||||||||||||    |||||||||||||||| | ||||||  |||| |||||||    
T  3880405 aaaacgaccactataaaaacgatatccaacaccatctgtcgtcactactcaccccctaagaaaaaacacccctcaaaattaaactccaagtcttgaacac 3880504  T
Q  251 caaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcga 314  Q
    ||||| ||| | |||||   ||||||| || ||||||||  ||||| ||||||||||| |||||    
T  3880505 caaagctgagccacatccaaaaagctcatatccgaaagattattcaacttccaccaccactcga 3880568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 6860436 - 6860338
Alignment:
Q  22 cggtgaaactgagaatacaaacaaaaggcgtcgtatata--ggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccacaaaaa 119  Q
    |||||||||| |||||||||||||||| || ||||||||  |||||||||||  ||||||||||||||||||||| |  || ||||||| ||||||||||    
T  6860436 cggtgaaactaagaatacaaacaaaagacgccgtatataggggcggaacacccaaaaataaacaccctaaaaacacctatgcggacaac-cccacaaaaa 6860338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 15 - 83
Target Start/End: Original strand, 17278133 - 17278201
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaaca 83  Q
    |||||||||||||  | |||||||||| | ||||||||||||||||||||||||||| |||||||||||    
T  17278133 cagagaccggtgattcagagaatacaatctaaaggcgtcgtatataggcggaacacccgaaaataaaca 17278201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 26534424 - 26534464
Alignment:
Q  37 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 77  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26534424 tacaaacaaaaggcgtcgtatataggcggaacacctgaaaa 26534464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 13423772 - 13423718
Alignment:
Q  15 cagagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaaca 69  Q
    ||||||||  ||||||||||||||||| | |||||||||||||||||||||||||    
T  13423772 cagagacctttgaaactgagaatacaatctaaaggcgtcgtatataggcggaaca 13423718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 58537 - 58238
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaaacatcattgaggacaacacccaca 115  Q
    ||||||||||||||| || |||| |||||||||||| ||||||||||  |||||||  |||||||| |||||||||||| |  |||| ||| ||  ||      
T  58537 agagaccggtgaaacagataatagaaacaaaaggcgccgtatataggtagaacacccaaaaataaataccctaaaaacacccatgagaacacca-tcagc 58439  T
Q  116 aaaaatacgcatcatcatctaaaatagactccttcacgaaaatgaccactgtataaatgatatcca--accatctatcgtcactactcacccccttctaa 213  Q
     ||| ||| ||||| || | |||| ||||||||||||||||| ||||| |||| || |||||||||  || | |  |||||||||||||| |||    ||    
T  58438 caaagtacacatcaccaccaaaaacagactccttcacgaaaacgaccattgtaaaactgatatccaacactacccgtcgtcactactcacacccaaagaa 58339  T
Q  214 aaacacccctcaaagtaaaactctcagtcctgaacaccaaagttgaactacatctgcaaagctcctacccgaaagaccattcagcttccaccacctctcg 313  Q
     ||||| ||||||| | ||||||||||||| ||||||||||| ||| | ||||  | ||||||| || ||||||||  |||||||||||| || ||||||    
T  58338 caacactcctcaaaattaaactctcagtcccgaacaccaaagctgagccacattcgaaaagctcttatccgaaagataattcagcttccatcatctctcg 58239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 91
Target Start/End: Original strand, 683 - 742
Alignment:
Q  32 gagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccctaaaa 91  Q
    |||||||||||| |||| ||||||||||| | |||||||| ||||||||||||| |||||    
T  683 gagaatacaaactaaagacgtcgtatatatgtggaacacccgaaaataaacaccataaaa 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1384 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 1347 - 1494
Alignment:
Q  40 aaacaaaaggcgtcgtatataggcggaacacctg-aaaataaacaccct-aaaaacatcattgaggacaac---acccacaaaaaatacgcatcatcatc 134  Q
    |||||||||||| ||||||||||| ||||||| | |||||||||||| | ||||||| |  | ||||||||   |||||| |||||||| | ||| || |    
T  1347 aaacaaaaggcgccgtatataggcagaacacccgaaaaataaacaccataaaaaacacccctaaggacaacaaaacccac-aaaaatacacgtcaccacc 1445  T
Q  135 taaaatagactccttcacgaaaatgaccactgtataaatgatatccaac 183  Q
    |||||  ||||||| ||||| ||  ||||||||| ||| ||||||||||    
T  1446 taaaactgactcctacacgagaacaaccactgtaaaaacgatatccaac 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 41841 - 41911
Alignment:
Q  16 agagaccggtgaaactgagaatacaaacaaaaggcgtcgtatataggcggaacacctgaaaataaacaccc 86  Q
    |||| ||||||||| ||||||||||||  |||||||||||| | ||||| ||||||  | |||||||||||    
T  41841 agaggccggtgaaattgagaatacaaattaaaggcgtcgtacaaaggcgaaacacccaagaataaacaccc 41911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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