View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12032_high_11 (Length: 345)
Name: NF12032_high_11
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12032_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 42825105 - 42825417
Alignment:
| Q |
1 |
tcatgtttaacaatgctggtatctctgatgataaaaatagagaaatattgaattatgatagtgaagctttcaaaagggtatttgatgtaaatgtttatgg |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42825105 |
tcatgtttaacaatgctggtatctctgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaagggtatttgatgtaaatgtttatgg |
42825204 |
T |
|
| Q |
101 |
agctttcttgggtgcgaagtatgctgctagggtaatgataccaaataaaaaaggtgttattctttttactgcaagtgttgctacagcaactgctggtgaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42825205 |
agctttcttgggtgcgaagcatgctgctagggtaatgataccaaataaaaaaggtgttattctttttactgcaagtgttgctacagaaactgctggtgaa |
42825304 |
T |
|
| Q |
201 |
tcaacacatgcttattcttcttcaaagcatgcattagtgggacttatgaagaatttgtgtgtagagttaggacaatatgggattaaagtgaattgtatct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42825305 |
tcaacacatgcttattcttcttcaaagcatgcattagtgggacttatgaagaatttgtgtgtagagttaggacaatatgggattaaagtgaattgtatct |
42825404 |
T |
|
| Q |
301 |
caccaggagctat |
313 |
Q |
| |
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||||||||||||| |
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| T |
42825405 |
caccaggagctat |
42825417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 42821467 - 42821797
Alignment:
| Q |
1 |
tcatgtttaacaatgctggtatct---ctgatgataaaaatagagaaatattgaattatgatagtgaagctttcaaaagggtatttgatgtaaatgttta |
97 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42821467 |
tcatgtttaacaatgctggtatctgatctgatgacaaaaatagagaaatattgaattatgatagtgaagctttcaaaagggtatttgatgtaaatgttta |
42821566 |
T |
|
| Q |
98 |
tggagctttcttgggtgcgaagtatgctgctagggtaatgataccaaataaaaaaggtgttattctttttactgcaagtgttgctacagcaactgctggt |
197 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||| ||| | || ||||| |||||||||||||||||||||||||||||| || ||||||| |
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| T |
42821567 |
tggagctttcttgggtgctaagcatgctgctagggtaatgatcccacaaaagaaaggggttattctttttactgcaagtgttgctacaaaaattgctggt |
42821666 |
T |
|
| Q |
198 |
gaatcaacacatgcttattcttcttcaaagcatgcattagtgggacttatgaagaatttgtgtgtagagttaggacaatatgggattaaagtgaattgta |
297 |
Q |
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||| |||||||||||||| ||| ||||||||||||||| || || |||| ||||||||||||||||| |||||| |||||||||||| ||| ||||||| |
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| T |
42821667 |
gaaacaacacatgcttatacttgttcaaagcatgcattggtagggcttacaaagaatttgtgtgtagaattaggaaaatatgggattagagttaattgta |
42821766 |
T |
|
| Q |
298 |
tctcaccaggagctattcctactccaattct |
328 |
Q |
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||||||| ||| |||||||||||||||| |
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| T |
42821767 |
tctcacctccggctcttcctactccaattct |
42821797 |
T |
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