View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12032_high_3 (Length: 540)
Name: NF12032_high_3
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12032_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 143 - 534
Target Start/End: Original strand, 50752781 - 50753171
Alignment:
| Q |
143 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgttnnnnnnnntggaaa |
242 |
Q |
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| T |
50752781 |
tttacaccactactaataagtttagagatttttattacttatatagaaaacaaattgatcaatctcttttttaaaacccatttgt-caaaaaaatggaaa |
50752879 |
T |
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| Q |
243 |
atctctccgctcaaaccttgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttccttcatctatatattctcta |
342 |
Q |
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| T |
50752880 |
atctctccactcaaaccctgattccacgtgtatggtcttggttcaatacgcgcttgctccatctataaagcacgcacttcctccatctatatattctcta |
50752979 |
T |
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| Q |
343 |
tccagtacccttattctcacactctcatacattcacgttcttcgcatttattagtctctctcatcacatttcactctctatttcatctctctacttttga |
442 |
Q |
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| T |
50752980 |
tccagtacccttattctcacactctcatatattcaccttcttcgcatttattagtctctctcatcacatttcactctctatttcctctctctacttttga |
50753079 |
T |
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| Q |
443 |
gaatggctcgcatttgcattacctttccgatgctctttgtagcaatgttctttctctctgtcgttgcacaatatccaacgacatctcctaag |
534 |
Q |
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| T |
50753080 |
gaatggctcgcatttgcattaccttttcgatgctctttgtagcaatgttctttctctctgtcgttgcacaatatccaacggcatctcctaag |
50753171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 50752095 - 50752235
Alignment:
| Q |
4 |
tccaatggaagacaatatggaaatgtgtttgtttcatgatgaaccttttacttctgaaaatagtttaaaacatacaaatattaaaaatagttgtgatgga |
103 |
Q |
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| T |
50752095 |
tccaatggaagacaatatggaaatgtgtttgtttc-tgatcaaccttttacttttgaaaatagtttaaaacatacaaatattaaaaatagttgtgatgga |
50752193 |
T |
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| Q |
104 |
tacggatgtacacgaagtcgaactaaaaagtgagtggccttt |
145 |
Q |
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| T |
50752194 |
tacggatgaacatgaagtcgaactagaaagtgagtggccttt |
50752235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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