View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12032_high_5 (Length: 503)
Name: NF12032_high_5
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12032_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 14 - 487
Target Start/End: Original strand, 7382592 - 7383059
Alignment:
| Q |
14 |
atggacatcaagaataatccnnnnnnntagttgcatcattannnnnnngtatagagaattgtcagagaaggttctttctttcactccttttgttattttt |
113 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7382592 |
atggccatcaagaataatccaaaaaaatagttgcatcattatttttttgtatagagaattgtcagagaaggttctttctttcactccttttgttattttt |
7382691 |
T |
|
| Q |
114 |
ggcatattcttcctaggtttcttcttttatatgannnnnnnncttctttcatgattatcatctttgagtttagaatctttcatgattttgtttagatctt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7382692 |
ggcatattcttcctaggtttcttcttttatatgatttt-----ttttttcatgattatcatctttgagtttagaaactttcatgattttgtttagatctt |
7382786 |
T |
|
| Q |
214 |
ggtttgcttgtgtttttatcaaaccaggtttctattttctattttgttgttgttgtgggattagaatgattttgtctctttattgtgtttgtaaatgaat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7382787 |
ggtttgcttgtgtttttatcaaaccaggtttctatcttctatttt-ttgttgttgtgggattagaatgattttgtctctttattgtgtttgtaaatgaat |
7382885 |
T |
|
| Q |
314 |
tattagaatctatcattgttttctcacaataatcataattgttatgcttggttgagcaatttccactgtttctttgctgtcacttgattgcacacagttg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7382886 |
tattagaatctatcattgttttctcacaataatcataattgttatgcttggttgagcaatttccactgtttctttgctgtcacttgattgcacacagttg |
7382985 |
T |
|
| Q |
414 |
aattgaattgagttcattgacatgttgatccctttattcattatgcttttataatcaaatttatttttataagt |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7382986 |
aattgaattgagttcattgacatgttgatccctttattcattatgcttttataatcaaatttatttttataagt |
7383059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University