View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12032_low_14 (Length: 267)
Name: NF12032_low_14
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12032_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 34826654 - 34826771
Alignment:
| Q |
97 |
caagtgcaattccaaacaaaatcaatgacaacctgtttgacttgctattgcaggtaaaaaaccacatttcctatagtgggaagggattgccccttcccat |
196 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
34826654 |
caagtgcaattccaaacaaaaccaatgacaacctgtttaacttgctattgcaggtaaaaaaccacatttcccatagtggaaagggattgccccttcccat |
34826753 |
T |
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| Q |
197 |
gtgaaatgctaccattaa |
214 |
Q |
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| T |
34826754 |
gtgaaatgctacctttaa |
34826771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 41466420 - 41466221
Alignment:
| Q |
3 |
gtgtgtgtggattttgtggtgtggatagttattttttaaaaatgagaggtgtagttcacagtataatataataagtcattaatca-nnnnnnnnncaagt |
101 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||||||| || | |
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| T |
41466420 |
gtgtgtttggattttgtggtgtggatagttatttttaaaaaatgggaggtgtagttcacaatataatataataagttattaatcattttttgtctcagct |
41466321 |
T |
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| Q |
102 |
gcaattccaaacaaaatcaatgacaacctgtttgacttgctattgcaggtaaaaaaccacatttcctatagtgggaagggattgccccttcccatgtgaa |
201 |
Q |
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| T |
41466320 |
gcaattccaaacaaaaccaatggcaacctgtttgactggctattgcaggtaaaaaaccacctttcccatggtgggaaggttttataccttcccatgtgaa |
41466221 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 45320663 - 45320464
Alignment:
| Q |
3 |
gtgtgtgtggattttgtggtgtggatagttattttttaaaaatgagaggtgtagttcacagtataatataataagtcattaatca-nnnnnnnnncaagt |
101 |
Q |
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| T |
45320663 |
gtgtgtttggattttgtggtgtgaatagttattttttaagaatgggaggtgtggttcacaatataatataataagtcattaatcattttttgtctcagct |
45320564 |
T |
|
| Q |
102 |
gcaattccaaacaaaatcaatgacaacctgtttgacttgctattgcaggtaaaaaaccacatttcctatagtgggaagggattgccccttcccatgtgaa |
201 |
Q |
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||||||||||||||| ||||| |||| |||||||| |||||||||||||||||| ||||||||| || ||||||||| || |||||||||||||| |
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| T |
45320563 |
tcaattccaaacaaaaccaatggcaacttgtttgacaggctattgcaggtaaaaaagcacatttcccatggtgggaaggttttataccttcccatgtgaa |
45320464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 12138982 - 12139158
Alignment:
| Q |
4 |
tgtgtgtggattttgtggtgtggatagttattttttaaaaat-gagaggtgtagttcacagtataatataataagtcattaatca-nnnnnnnnncaagt |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||||| ||| | |
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| T |
12138982 |
tgtgtgtggattttgtggtgtggatagttattttttaagaatggggaggtgtagttcacaatataatataataagtcattaatcattttttgtctcaact |
12139081 |
T |
|
| Q |
102 |
gcaattccaaacaaaatcaatgacaacctgtttgacttgctattgcaggtaaaaaaccacatttcctatagtgggaa |
178 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||| |||||||||||||||||| ||| ||||| || ||||||| |
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| T |
12139082 |
gcaattccaaacaaaaccaatggcaacctgtttgactggctattgcaggtaaaaaatcacctttcccatggtgggaa |
12139158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 97 - 209
Target Start/End: Complemental strand, 26520975 - 26520864
Alignment:
| Q |
97 |
caagtgcaattccaaacaaaatcaatgacaacctgtttgacttgctattgcaggtaaaaaaccacatttcctatagtgggaagggattgccccttcccat |
196 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||| |
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| T |
26520975 |
caagtgcaattccaaacaaaaccaatggcaacctgtttgacttgctattgcaggtaaaaaaccacatttcccatggtgggaagggattg-cccttcccat |
26520877 |
T |
|
| Q |
197 |
gtgaaatgctacc |
209 |
Q |
| |
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||||||||||||| |
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| T |
26520876 |
gtgaaatgctacc |
26520864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 125 - 201
Target Start/End: Original strand, 3230096 - 3230172
Alignment:
| Q |
125 |
caacctgtttgacttgctattgcaggtaaaaaaccacatttcctatagtgggaagggattgccccttcccatgtgaa |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| || |||| || |||||| || |||||||||||| |
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| T |
3230096 |
caacctgtttgacttgctattgcaggtaaaaaaccacctttcccatggtggaaaaggattggcctttcccatgtgaa |
3230172 |
T |
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