View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12032_low_16 (Length: 257)

Name: NF12032_low_16
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12032_low_16
NF12032_low_16
[»] chr1 (4 HSPs)
chr1 (1-256)||(24562472-24562737)
chr1 (124-256)||(24552586-24552718)
chr1 (1-32)||(41505557-41505588)
chr1 (1-34)||(3887760-3887793)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-32)||(157977-158008)
[»] chr8 (3 HSPs)
chr8 (1-32)||(40981000-40981031)
chr8 (4-34)||(12976084-12976114)
chr8 (1-33)||(29819049-29819081)
[»] chr7 (6 HSPs)
chr7 (1-32)||(9210498-9210529)
chr7 (2-33)||(28341234-28341265)
chr7 (1-31)||(30571092-30571122)
chr7 (2-32)||(33128627-33128657)
chr7 (1-33)||(21568797-21568829)
chr7 (5-33)||(39630114-39630142)
[»] chr2 (3 HSPs)
chr2 (1-32)||(1633715-1633746)
chr2 (4-32)||(2195850-2195878)
chr2 (1-33)||(9174693-9174725)
[»] chr6 (1 HSPs)
chr6 (1-31)||(13907491-13907521)
[»] chr5 (4 HSPs)
chr5 (1-31)||(24030571-24030601)
chr5 (1-34)||(12433539-12433572)
chr5 (1-33)||(28776854-28776886)
chr5 (1-33)||(42500378-42500410)
[»] chr3 (6 HSPs)
chr3 (2-32)||(10704713-10704743)
chr3 (1-31)||(30956795-30956825)
chr3 (1-31)||(30972607-30972637)
chr3 (1-31)||(35959625-35959655)
chr3 (1-33)||(944362-944394)
chr3 (1-29)||(39442321-39442349)
[»] chr4 (1 HSPs)
chr4 (1-29)||(39603600-39603628)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 24562472 - 24562737
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacagatataatttaatttaa----------actgttttgttgtattagttttactt----taattaagtaaa 86  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||| ||||||    ||||||||||||    
T  24562472 ataagctgcaaataagctgtttatccaaacagatataatttaatttaatttaatttaaactgttttgttgtattagtgttacttactttaattaagtaaa 24562571  T
Q  87 ccattacctaattatcttttatgtatgtatgtcatgtcacaggtaagaaagatagctatgatgttcaagttaaaggagttcaaatatctccagagcccgt 186  Q
    |||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  24562572 ccattacctaattatcttttatg----tatgtcatgtcacaggtaagaaagatagctatgatgttcaagttaaaggagttcaaatatctcctgaccccgt 24562667  T
Q  187 tgcaagaggccaacctgctacattcaccatttctgcaaatacaagtaatgcttatcatcacgtgcttttc 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  24562668 tgcaagaggccaacctgctacattcaccatttctgcaaatacaagtaatgcttatcttcacgtgcttttc 24562737  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 124 - 256
Target Start/End: Original strand, 24552586 - 24552718
Alignment:
Q  124 cacaggtaagaaagatagctatgatgttcaagttaaaggagttcaaatatctccagagcccgttgcaagaggccaacctgctacattcaccatttctgca 223  Q
    ||||| |||||||| |||||||||| || | ||||||| ||||||||||||||| || ||| ||||||||||||  ||||||||||||||||||||||||    
T  24552586 cacagataagaaagctagctatgatattgaggttaaagaagttcaaatatctcctgatcccattgcaagaggccgccctgctacattcaccatttctgca 24552685  T
Q  224 aatacaagtaatgcttatcatcacgtgcttttc 256  Q
    | |||||||| |||||||| |||||||||||||    
T  24552686 actacaagtactgcttatcttcacgtgcttttc 24552718  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 41505588 - 41505557
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacag 32  Q
    ||||||||||||||||||||||||||||||||    
T  41505588 ataagctgcaaataagctgtttatccaaacag 41505557  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3887760 - 3887793
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacagat 34  Q
    |||||||||||||||| |||||||||||||||||    
T  3887760 ataagctgcaaataagttgtttatccaaacagat 3887793  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 158008 - 157977
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacag 32  Q
    ||||||||||||||||||||||||||||||||    
T  158008 ataagctgcaaataagctgtttatccaaacag 157977  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 40981031 - 40981000
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacag 32  Q
    ||||||||||||||||||||||||||||||||    
T  40981031 ataagctgcaaataagctgtttatccaaacag 40981000  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 34
Target Start/End: Complemental strand, 12976114 - 12976084
Alignment:
Q  4 agctgcaaataagctgtttatccaaacagat 34  Q
    |||||||||||||||||||||||||||||||    
T  12976114 agctgcaaataagctgtttatccaaacagat 12976084  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29819049 - 29819081
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacaga 33  Q
    |||||||||||||||| ||||||||||||||||    
T  29819049 ataagctgcaaataagttgtttatccaaacaga 29819081  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 9210529 - 9210498
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacag 32  Q
    ||||||||||||||||||||||||||||||||    
T  9210529 ataagctgcaaataagctgtttatccaaacag 9210498  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 33
Target Start/End: Original strand, 28341234 - 28341265
Alignment:
Q  2 taagctgcaaataagctgtttatccaaacaga 33  Q
    ||||||||||||||||||||||||||||||||    
T  28341234 taagctgcaaataagctgtttatccaaacaga 28341265  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 30571092 - 30571122
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  30571092 ataagctgcaaataagctgtttatccaaaca 30571122  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 33128657 - 33128627
Alignment:
Q  2 taagctgcaaataagctgtttatccaaacag 32  Q
    |||||||||||||||||||||||||||||||    
T  33128657 taagctgcaaataagctgtttatccaaacag 33128627  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 21568797 - 21568829
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacaga 33  Q
    |||||||||||| ||||||||||||||||||||    
T  21568797 ataagctgcaaacaagctgtttatccaaacaga 21568829  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 39630114 - 39630142
Alignment:
Q  5 gctgcaaataagctgtttatccaaacaga 33  Q
    |||||||||||||||||||||||||||||    
T  39630114 gctgcaaataagctgtttatccaaacaga 39630142  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 1633715 - 1633746
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacag 32  Q
    ||||||||||||||||||||||||||||||||    
T  1633715 ataagctgcaaataagctgtttatccaaacag 1633746  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 2195878 - 2195850
Alignment:
Q  4 agctgcaaataagctgtttatccaaacag 32  Q
    |||||||||||||||||||||||||||||    
T  2195878 agctgcaaataagctgtttatccaaacag 2195850  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9174725 - 9174693
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacaga 33  Q
    |||||||||||||||| ||||||||||||||||    
T  9174725 ataagctgcaaataagttgtttatccaaacaga 9174693  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 13907521 - 13907491
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  13907521 ataagctgcaaataagctgtttatccaaaca 13907491  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 24030571 - 24030601
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  24030571 ataagctgcaaataagctgtttatccaaaca 24030601  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12433539 - 12433572
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacagat 34  Q
    |||||||||||||||| |||||||||||||||||    
T  12433539 ataagctgcaaataagttgtttatccaaacagat 12433572  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28776886 - 28776854
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacaga 33  Q
    |||||||||||||||| ||||||||||||||||    
T  28776886 ataagctgcaaataagttgtttatccaaacaga 28776854  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 42500378 - 42500410
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacaga 33  Q
    |||||||| ||||||||||||||||||||||||    
T  42500378 ataagctggaaataagctgtttatccaaacaga 42500410  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 10704713 - 10704743
Alignment:
Q  2 taagctgcaaataagctgtttatccaaacag 32  Q
    |||||||||||||||||||||||||||||||    
T  10704713 taagctgcaaataagctgtttatccaaacag 10704743  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 30956795 - 30956825
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  30956795 ataagctgcaaataagctgtttatccaaaca 30956825  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 30972607 - 30972637
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  30972607 ataagctgcaaataagctgtttatccaaaca 30972637  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 35959625 - 35959655
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaaca 31  Q
    |||||||||||||||||||||||||||||||    
T  35959625 ataagctgcaaataagctgtttatccaaaca 35959655  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 944394 - 944362
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaacaga 33  Q
    |||||||||||||||| ||||||||||||||||    
T  944394 ataagctgcaaataagttgtttatccaaacaga 944362  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39442349 - 39442321
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaa 29  Q
    |||||||||||||||||||||||||||||    
T  39442349 ataagctgcaaataagctgtttatccaaa 39442321  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39603600 - 39603628
Alignment:
Q  1 ataagctgcaaataagctgtttatccaaa 29  Q
    |||||||||||||||||||||||||||||    
T  39603600 ataagctgcaaataagctgtttatccaaa 39603628  T

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