View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12032_low_18 (Length: 242)
Name: NF12032_low_18
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12032_low_18 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 50752016 - 50751775
Alignment:
| Q |
1 |
aattgaggataaattatataacaataatattgaacaagggttttagagagaagaagataatttttgtaaaaaagaagaagaaaaatgtgattggtacaaa |
100 |
Q |
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| T |
50752016 |
aattgatgagaaattatataacaataatattgaacaagggttttagagagaagaagataatttttgtaaaaaagaagaagaaaaatgtgattggtacaaa |
50751917 |
T |
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| Q |
101 |
gatcaatcaatcaatagcaattagtaaaagtaacaaatttgcatggtccacaacaccgtaagtcatgccttgatcaaacacttttcatcgacaaggtcct |
200 |
Q |
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| T |
50751916 |
gatcaatcaatcaatagcaattagtaaaagtaacaaatttgcatggtccacaacaccgtaagtcatgccttgatcaaacacttttcatcaacaatgtcct |
50751817 |
T |
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| Q |
201 |
ttctaagttacaaaaactccttcacaactatgactctctgct |
242 |
Q |
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| T |
50751816 |
ttcaaagttacaaaaactccttcacaactatgactctatgct |
50751775 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 62
Target Start/End: Complemental strand, 223899 - 223865
Alignment:
| Q |
28 |
tattgaacaagggttttagagagaagaagataatt |
62 |
Q |
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| T |
223899 |
tattgaacaagagttttagagagaagaagataatt |
223865 |
T |
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