View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12032_low_2 (Length: 609)
Name: NF12032_low_2
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12032_low_2 |
 | |
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| [»] scaffold0320 (1 HSPs) |
| | |
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| [»] scaffold0167 (1 HSPs) |
| | |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 233 - 515
Target Start/End: Complemental strand, 26227693 - 26227411
Alignment:
| Q |
233 |
aatgaaaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaag |
332 |
Q |
| |
|
||||||||||| ||||||||||| |||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |
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| T |
26227693 |
aatgaaaagactccactaaatttgtaactgaaaagtggtggcccactatatcttgaaagttgtatagtaaaggggaaattgaaaagaccatttttgaaaa |
26227594 |
T |
|
| Q |
333 |
taatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaatttccaattttcgtcttcatattttttctagtcgaaaatgacattttt |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
26227593 |
taatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaaatgccaatttttgtcttcatattttttctagtcgaaaatgacattttt |
26227494 |
T |
|
| Q |
433 |
aggtgcaatttgttggcctgtaatttttgggaggtaatttgttagccctacttccactttttaattcacataacattaatttt |
515 |
Q |
| |
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||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||| |
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| T |
26227493 |
aggagcaatttgttggcctataatttttgggaggtaatttgttagctctacttccactttttaattcacgtaacattagtttt |
26227411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 26227902 - 26227689
Alignment:
| Q |
1 |
ttttataaatgatgaaggtgactgatgagacaaacccttcattttccatattcagtaaccgtcacatgtgttaaaagagatgatagtttcttgagttagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||| |
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|
| T |
26227902 |
ttttataaatgatgaaggtgactgatgagacaaacccttcattttccatattcagtaaccgccacgtgttttaaaagagatgatagtttcttgagttagt |
26227803 |
T |
|
| Q |
101 |
gggaagttgaaaattttgagtgaaatcaatccacaaaatcttcggaatggatgcactataatgatgaggaatggggaagcacgaaggagaggaagatgaa |
200 |
Q |
| |
|
||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26227802 |
gggaagttgaaaattctgagggaaataaatccacaaaatcttcagaatggatgcactataatgatgaggaatggggatgcacgaaggagaggaagatgaa |
26227703 |
T |
|
| Q |
201 |
gggttaacaaatga |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
26227702 |
gggttaacaaatga |
26227689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 7474710 - 7474416
Alignment:
| Q |
1 |
ttttataaatgatgaaggtgactgatgagacaaacccttcattttccatattcagtaaccgtcacatgtgttaaaagaga---tgatagtttcttgagtt |
97 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| |||||||| |||||||| ||||||| ||| ||||| |||| || | |||||||||||| |
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|
| T |
7474710 |
ttttataaatgatgaaggtaactgatgtgacaaacacttcatttcccatattcggtaaccgctgtgtgtcttaaatgagagggtggtggtttcttgagtt |
7474611 |
T |
|
| Q |
98 |
agtggg-aagttgaaaattttgagtgaaatcaatccacaaaatcttcggaatggatgcactataatgatgaggaatggggaagcacgaaggagaggaaga |
196 |
Q |
| |
|
|||||| ||||||||| | | ||| |||| |||| ||||||||||| || || | |||| ||||||| |||||||||| |||||| | ||||| |
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|
| T |
7474610 |
agtgggaaagttgaaagtctcgagggaaacaaatcgacaaaatcttcagataagaggtgctatgatgatgatgaatggggaaatgcgaaggtaatgaaga |
7474511 |
T |
|
| Q |
197 |
tgaagggttaacaaatgacatttggtgtcctaggg--caatgaaaagaccccactaaattttt-aacaggaaagtggtggcccactatatcttgaa |
289 |
Q |
| |
|
|||||||||||||||||||| || ||| ||| ||| |||| |||||||||||||| ||||| ||| | |||||||||||||||| |||||||| |
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|
| T |
7474510 |
tgaagggttaacaaatgacacttcgtg-cctcggggaaaatggaaagaccccactaactttttcaactgccaagtggtggcccactaaatcttgaa |
7474416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 518 - 571
Target Start/End: Complemental strand, 26227291 - 26227238
Alignment:
| Q |
518 |
ctatgtttaatttaaccttaaaatattgcatacccggtcatccaaggccatatg |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26227291 |
ctatgtttaatttaaccttaaaatattgcatacccggtcatccaaggccatatg |
26227238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 212 - 390
Target Start/End: Original strand, 28760046 - 28760223
Alignment:
| Q |
212 |
tgacatttggtgtcctagggcaatgaaaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaat |
311 |
Q |
| |
|
||||| |||||| |||||||||||| |||||||||||||| |||| ||| | ||||||| ||||||||| |||||| ||||||| | |||| | | ||| |
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|
| T |
28760046 |
tgacacttggtgccctagggcaatggaaagaccccactaacttttcaactgcaaagtggcggcccactaaatcttg-aagttgtgcaataaaagaagaat |
28760144 |
T |
|
| Q |
312 |
tgaaaagactatttttgaaagtaatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaatttcca |
390 |
Q |
| |
|
||||||||||||| ||| ||||||| | | ||||| ||||| |||| | || ||||| | |||||||||||| ||||| |
|
|
| T |
28760145 |
tgaaaagactattcttggaagtaattagaaacatgatgtcatcctccaaggagtacataatgtattttcaaaaattcca |
28760223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 85 - 459
Target Start/End: Original strand, 36497932 - 36498305
Alignment:
| Q |
85 |
agtttcttgagttagtgggaagttgaaaattttgagtgaaatcaatccacaaaatcttcggaatggatgcactataatgatgaggaatggggaagcacga |
184 |
Q |
| |
|
||||| || ||||||| |||||||||| ||| ||| |||| |||| ||||||| ||| ||| ||| | ||| ||||||||| |||||| || || |
|
|
| T |
36497932 |
agtttttttagttagttagaagttgaaagtttcgagaaaaataaatctacaaaatattcagaaaggaggtgctacaatgatgagaaatgggaaaatgtga |
36498031 |
T |
|
| Q |
185 |
aggagaggaagatgaagggttaacaaatgacatttggtgtcctagggcaa-tgaaaagaccccactaaatttttaacaggaaagtggtggcccactatat |
283 |
Q |
| |
|
||||| |||||||||| |||||||| ||||| |||||| | |||||||| || ||||||||| |||| |||| ||| ||| ||||||||||||| || |
|
|
| T |
36498032 |
aggaggtgaagatgaagagttaacaagtgacacttggtgccttagggcaaatggaaagaccccgctaacttttcaactacaaattggtggcccactaaat |
36498131 |
T |
|
| Q |
284 |
-cttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaagtaatgattagcatgacgtcattctcctaagaatacatgaagtattttcaa |
382 |
Q |
| |
|
|||||| ||||| | | || | |||||||||||||| ||| ||||||||||| ||||||||| |||| |||| |||||||| | ||| |||| || |
|
|
| T |
36498132 |
tcttgaa-gttgtgcattgaaagaaaaattgaaaagaccattcttgaaagtaataattagcatggcgtccgtctcgaaagaatacttagagt-ttttaaa |
36498229 |
T |
|
| Q |
383 |
aatttccaattttcgtcttcatattttttctagtcg-aaaatgacatttttaggtgcaatttgttggcctgtaatttt |
459 |
Q |
| |
|
|| | |||||||| |||| || ||||| ||||| |||||||||||||| || |||||||||| || || |||||| |
|
|
| T |
36498230 |
aaatgtcaattttctccttc--atgttttcaagtcgaaaaatgacatttttgggggcaatttgttagcgtgcaatttt |
36498305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 352
Target Start/End: Complemental strand, 7239 - 6973
Alignment:
| Q |
86 |
gtttcttgagttagtgggaagttgaaaattttgagtgaaatcaatccacaaaatcttcggaatggatgcactataatgatgaggaatggggaagcacgaa |
185 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||| ||| |||| ||||||||||| || || || ||||||| |||| ||||||||| ||| |
|
|
| T |
7239 |
gtttgttgagttagtgggaagttgaaaatctcgagggaaccaaatcgacaaaatcttcagataagaggcgctataattatgataaatggggaaatgtgaa |
7140 |
T |
|
| Q |
186 |
ggagaggaagatgaagggttaacaaatgacatttggtgtcctagggcaat-gaaaagaccccactaaatttttaacaggaaagtggtggcccactatatc |
284 |
Q |
| |
|
|||| ||||||||| || || || ||||| |||| | ||||| || | |||| |||||||||||||| ||| | ||||||||||||| ||| ||| |
|
|
| T |
7139 |
ggagttgaagatgaaagggcaataagtgacacttggcaccttagggtaaaaggaaaggccccactaaattttcaactgcaaagtggtggcccgctaaatc |
7040 |
T |
|
| Q |
285 |
ttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaagtaatgattagcatgacgtca |
352 |
Q |
| |
|
||||||| ||| | | ||| ||||| |||||||||| | | ||||||| ||| ||||||||||||||| |
|
|
| T |
7039 |
ttgaaag-tgtgcagcaaaaggaaagttgaaaagaccactcttgaaagcaataattagcatgacgtca |
6973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0167 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0167
Description:
Target: scaffold0167; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 352
Target Start/End: Original strand, 9545 - 9811
Alignment:
| Q |
86 |
gtttcttgagttagtgggaagttgaaaattttgagtgaaatcaatccacaaaatcttcggaatggatgcactataatgatgaggaatggggaagcacgaa |
185 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||| ||| |||| ||||||||||| || || || ||||||| |||| ||||||||| ||| |
|
|
| T |
9545 |
gtttgttgagttagtgggaagttgaaaatctcgagggaaccaaatcgacaaaatcttcagataagaggcgctataattatgataaatggggaaatgtgaa |
9644 |
T |
|
| Q |
186 |
ggagaggaagatgaagggttaacaaatgacatttggtgtcctagggcaat-gaaaagaccccactaaatttttaacaggaaagtggtggcccactatatc |
284 |
Q |
| |
|
|||| ||||||||| || || || ||||| |||| | ||||| || | |||| |||||||||||||| ||| | ||||||||||||| ||| ||| |
|
|
| T |
9645 |
ggagttgaagatgaaagggcaataagtgacacttggcaccttagggtaaaaggaaaggccccactaaattttcaactgcaaagtggtggcccgctaaatc |
9744 |
T |
|
| Q |
285 |
ttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaagtaatgattagcatgacgtca |
352 |
Q |
| |
|
||||||| ||| | | ||| ||||| |||||||||| | | ||||||| ||| ||||||||||||||| |
|
|
| T |
9745 |
ttgaaag-tgtgcagcaaaaggaaagttgaaaagaccactcttgaaagcaataattagcatgacgtca |
9811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 18214401 - 18214447
Alignment:
| Q |
1 |
ttttataaatgatgaaggtgactgatgagacaaacccttcattttcc |
47 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
18214401 |
ttttataaatgatgaaggtaactgatgggacaaacgcttcattttcc |
18214447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Original strand, 15926822 - 15926865
Alignment:
| Q |
415 |
gtcgaaaatgacatttttaggtgcaatttgttggcctgtaattt |
458 |
Q |
| |
|
|||||||||||||||||| || ||| |||||||||||||||||| |
|
|
| T |
15926822 |
gtcgaaaatgacatttttgggggcattttgttggcctgtaattt |
15926865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 458
Target Start/End: Original strand, 19708983 - 19709124
Alignment:
| Q |
312 |
tgaaaagactatttttgaaagtaatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaatttccaattttcgtcttcatatttttt |
411 |
Q |
| |
|
|||||||| || | ||||||||||| |||| ||||||||||| |||| || ||||||| ||| ||||||||| | |||| |||| ||||||||||| |
|
|
| T |
19708983 |
tgaaaagaatactcttgaaagtaataattatcatgacgtcatcctcc-aaaaatacat--agtgttttcaaaaatgccaactttctccttcatatttt-- |
19709077 |
T |
|
| Q |
412 |
ctagtcgaaaatgaca-tttttaggtgcaatttgttggcctgtaattt |
458 |
Q |
| |
|
||||| |||||| || ||||| || |||||||||| ||| ||||||| |
|
|
| T |
19709078 |
-tagtcaaaaatggcattttttgggggcaatttgttagccagtaattt |
19709124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 23857 - 23761
Alignment:
| Q |
12 |
atgaaggtgactgatgagacaaacc-cttcattttccatattcagtaaccgtcacatgtgttaaaagagatgatagtttcttgagttagtgggaagtt |
108 |
Q |
| |
|
|||||||||| |||| ||||||| | ||||||||||| | ||| ||||| | ||||| ||||||| || |||| ||||| ||||| |||||||||||| |
|
|
| T |
23857 |
atgaaggtgattgataagacaaaactcttcattttcccttttcggtaactgccacatttgttaaaggaaatgacagttt-ttgagatagtgggaagtt |
23761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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