View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12032_low_4 (Length: 505)
Name: NF12032_low_4
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12032_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 120 - 494
Target Start/End: Original strand, 31436599 - 31436971
Alignment:
| Q |
120 |
tttaacaatactcttgcatgcattacggtgtgaacacctccaaatattccaatctaattagtgaactgtgaagattgaattcaaaatttaatattgatag |
219 |
Q |
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| T |
31436599 |
tttaacaatcctcttgcatgcattacggtgtgaacacctccaaatattccaatctaattagtgaaccgtgaagattgaattcaaaatttaacattgatag |
31436698 |
T |
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| Q |
220 |
tcaaagacagatttttcaacaattaattaacaagatccttgaaaacatttcttattgttgcgtattagactatatggttggaattactcatcacttctgc |
319 |
Q |
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| T |
31436699 |
tcaaagatagattttgcaccaattaattaagaagatccttgaaaacatttcttattgttgcgtattagactatatggttggaattactcatcacttttgc |
31436798 |
T |
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| Q |
320 |
ctttcaagcttgcagagcggtggctagcttggtcataatactctttctgctctagtattcctcaatttccgaaagaaatctaaatggctccctcaaaatc |
419 |
Q |
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| T |
31436799 |
ctttcaagcttgcagagcggtggctagcttggtcataatactctttctgctctatta--cctcaatttccgaaagaaatctaaatggctccctcaaaatc |
31436896 |
T |
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| Q |
420 |
aaaagtgaaacatgtgttattgttcctaagtttctatattctccaaatgaccattggagacgatggcactttcat |
494 |
Q |
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| T |
31436897 |
aaaagtgaaacatgtgttattgttcctaagtttctatattctccaaatgaccattggagacgatggcactttcat |
31436971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 128
Target Start/End: Original strand, 31436349 - 31436418
Alignment:
| Q |
59 |
ctaaattgatttaactcaataaaaaagtatgtcttaaagacaatattagaaggaaagtggttttaacaat |
128 |
Q |
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| T |
31436349 |
ctaaattgatttaactcaataaaaaagtatgtcttaaagacaatgttagtaggaaagtggttttaacaat |
31436418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 18567331 - 18567287
Alignment:
| Q |
18 |
actttattatctcatgtgatatctatttcaaagtttggggtctaa |
62 |
Q |
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| T |
18567331 |
acttttttatctcatgtgatatctatttcaaagtttggggtctaa |
18567287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 31435618 - 31435662
Alignment:
| Q |
18 |
actttattatctcatgtgatatctatttcaaagtttggggtctaa |
62 |
Q |
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| T |
31435618 |
acttttttatctcatgtgatatctatttcaaagtttggggtctaa |
31435662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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