View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12032_low_9 (Length: 459)
Name: NF12032_low_9
Description: NF12032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12032_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 15 - 418
Target Start/End: Original strand, 39888046 - 39888451
Alignment:
| Q |
15 |
acaattaacaaatattgacaagatttt-atttgaaagaatctatttccgagattggcttgatacaagtcaagtaagagacaaaatctcaatacacatgtc |
113 |
Q |
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| T |
39888046 |
acaattaacaaatattgacaagatttttatttgaaagaatctatttccgagattggcttgatacaagtcaagtgaaagacataatctcaatacacatgtc |
39888145 |
T |
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| Q |
114 |
tttaacttgtttcatgcatagctataaatacatcaagtccttgaattcccataaaattacactcctatatatttctttttcttataagcagatatactca |
213 |
Q |
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| T |
39888146 |
tttaacttgtttcatgcatagctataaatacatcaagtccttgaattcccataaaattacactcctatatatttctttttcttataagcagatatactca |
39888245 |
T |
|
| Q |
214 |
tatacgagtatggtccggtgcaagttgtaattggtagttactctttctcttatctttaagggctatgc-nnnnnnnnnnnctttaataattaagggatat |
312 |
Q |
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| T |
39888246 |
tatatgagtatggtccggtgcaagttgtaattggtagtcactctttctcttatctttaagggctatgcttttttttttttctttaataattaagggatat |
39888345 |
T |
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| Q |
313 |
gttatcgagcaatctaaagatgctagtaaatggatgttggagtcaacaacaattagtttagaacaattgtgcaatgttggattatattgaatttggtgga |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39888346 |
gttatcgagcaatctaaagatgctagtaaatggatgttggagtcaacaccaattagtttagaacaattgtgcaatgttggattatattgaatttggtgga |
39888445 |
T |
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| Q |
413 |
ctattt |
418 |
Q |
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|||||| |
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| T |
39888446 |
ctattt |
39888451 |
T |
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