View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_high_10 (Length: 399)
Name: NF12033_high_10
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 14 - 383
Target Start/End: Complemental strand, 10011338 - 10010967
Alignment:
| Q |
14 |
gatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaagnnnnnnnncgcttttgcttcagaaacgagaaagaatatagaacaaaaagat |
113 |
Q |
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| T |
10011338 |
gatgtccaactcttctaaatcatttatgtctcccttcgaaaaaggaaagaaaaataactcttctgcttcagaaacgagaaagaatatagaacaaaaagac |
10011239 |
T |
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| Q |
114 |
aatttttaacgaaannnnnnnatgtccaattctccaaaacaggagcacctctcttctatannnnnnncataggttcgattggtctttcttccataaaaac |
213 |
Q |
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| T |
10011238 |
aatttttaaggaaaattttttatgtccaattctccaaaacaggagcacctctcttctatatttttttcataggttcgattggtctttcttccataaaaac |
10011139 |
T |
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| Q |
214 |
cnnnnnnnnn--tgcttcttctttgtttaaaggaaagtgtgtattgaaagcatacagacaatggaaggagagaacttggtgttaaaaggaaagtagttgc |
311 |
Q |
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| T |
10011138 |
caaaaaaaaaattgcttcttttttgtttaaaggaaagtgtgtattgaaagcatacagacaatggaaggagagaacttggtgttaaaaggaaagtagttgc |
10011039 |
T |
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| Q |
312 |
tgcatgtgcatggaaggtgttcgttttgtttacacctgttcttatttgtttatcttttgtttacatattttc |
383 |
Q |
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| T |
10011038 |
tgcatgtgcatggaaggtgttcgttttgtttacacctgttcttatttggttatcttttgtttacatattttc |
10010967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 561487 - 561424
Alignment:
| Q |
233 |
tttgtttaaaggaaagtgtgtattgaaagcatacagacaatggaaggagagaacttggtgttaa |
296 |
Q |
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| T |
561487 |
tttgtttaaaggaaagtgtctaatgaaagcatacatacaattgaatgagagaacttggtgttaa |
561424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 168
Target Start/End: Complemental strand, 561652 - 561565
Alignment:
| Q |
81 |
tcagaaacgagaaagaatatagaacaaaaagataatttttaacgaaannnnnnnatgtccaattctccaaaacaggagcacctctctt |
168 |
Q |
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| T |
561652 |
tcagaaacgagaaagaatatagaagaaaaggacaattttgaaggaaaaaatttgatgtccaattctccaaaacaggaacacctctctt |
561565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 17688937 - 17689007
Alignment:
| Q |
227 |
ttcttctttgtttaaaggaaagtgtgtattgaaagcatacagacaatgg---aaggagagaacttggtgtt |
294 |
Q |
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| T |
17688937 |
ttcttttttgtttaaaggaaagtgtctaatgaaagcatacatacaattgaataatgagagaacttggtgtt |
17689007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 273
Target Start/End: Complemental strand, 1678795 - 1678749
Alignment:
| Q |
227 |
ttcttctttgtttaaaggaaagtgtgtattgaaagcatacagacaat |
273 |
Q |
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| T |
1678795 |
ttcttttttgtttaaaggaaagtgtctaatgaaagcatacatacaat |
1678749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 4778852 - 4778812
Alignment:
| Q |
233 |
tttgtttaaaggaaagtgtgtattgaaagcatacagacaat |
273 |
Q |
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| T |
4778852 |
tttgtttaaaggaaagtgtctaatgaaagcatacatacaat |
4778812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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