View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_high_15 (Length: 350)
Name: NF12033_high_15
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 40826424 - 40826762
Alignment:
| Q |
1 |
acttttgcattttcaaattctctttatccaactaaatgagttatatcttgttcaacaatacactaaattaattacaatagtcaaatcatgaccctcgtga |
100 |
Q |
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| T |
40826424 |
actttcgcattttcaaattctctttatccaactaaatgagttatatcttgttcaacaatacactaaattaattacaatagtcaaatcatgaccctcgtga |
40826523 |
T |
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| Q |
101 |
taatgagacgataatatgtgaattatgttagaacttacgcaacagaagttttttataaatctatataaggtcactaacacttgataaaagatttgttctc |
200 |
Q |
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|||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40826524 |
taatgaaacaataatatgtgaattatgttggaacctacgcaacagaagttttttataaatctatataaggtcactaacacttgataaaagatttgttctc |
40826623 |
T |
|
| Q |
201 |
aattttaattaaacttctcgctcttctaaaattttcactaacttgaacgtaaaagtccttgcacgtaggtacactatccgtcatggagcaccaacgatat |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| | |
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| T |
40826624 |
aattttgattaaacttctcgctcttctaaaattttcactaacttgaacgtaaaagttcttgcacgtaggtacactatttgtcatggagcaccaacgatgt |
40826723 |
T |
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| Q |
301 |
cctttgacatatacaaacaactcacatcgtcgtcttcat |
339 |
Q |
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||||||||||||||||||||||| ||||||||||||||| |
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| T |
40826724 |
cctttgacatatacaaacaactcccatcgtcgtcttcat |
40826762 |
T |
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