View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12033_high_21 (Length: 285)

Name: NF12033_high_21
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12033_high_21
NF12033_high_21
[»] chr3 (8 HSPs)
chr3 (116-285)||(24413967-24414136)
chr3 (116-285)||(24419825-24419994)
chr3 (134-285)||(24378930-24379081)
chr3 (134-285)||(24401724-24401875)
chr3 (1-56)||(24413867-24413922)
chr3 (1-56)||(24420039-24420094)
chr3 (1-56)||(24401291-24401346)
chr3 (1-56)||(24378457-24378512)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 116 - 285
Target Start/End: Original strand, 24413967 - 24414136
Alignment:
Q  116 ttgagtttaatcgcattattgcagaaaatggaagaattatgggaagtataacaggagtacaaaaagctaaagttgctaacaaaatctggttaatcttcca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24413967 ttgagtttaatcgcattattgcagaaaatggaagaattatgggaagtataacaggagtacaaaaagctaaagttgctgacaaaatctggttaatcttcca 24414066  T
Q  216 ggcgattggtgacattagtttttcctatccatattcaattatccttcttgagatacaggaaccttaaaca 285  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  24414067 ggcacttggtgacattagtttttcctatccatattcaattatccttcttgagatacaggtaccataaaca 24414136  T

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Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 116 - 285
Target Start/End: Complemental strand, 24419994 - 24419825
Alignment:
Q  116 ttgagtttaatcgcattattgcagaaaatggaagaattatgggaagtataacaggagtacaaaaagctaaagttgctaacaaaatctggttaatcttcca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24419994 ttgagtttaatcgcattattgcagaaaatggaagaattatgggaagtataacaggagtacaaaaagctaaagttgctgacaaaatctggttaatcttcca 24419895  T
Q  216 ggcgattggtgacattagtttttcctatccatattcaattatccttcttgagatacaggaaccttaaaca 285  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  24419894 ggcacttggtgacattagtttttcctatccatattcaattatccttcttgagatacaggtaccataaaca 24419825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 134 - 285
Target Start/End: Original strand, 24378930 - 24379081
Alignment:
Q  134 ttgcagaaaatggaagaattatgggaagtataacaggagtacaaaaagctaaagttgctaacaaaatctggttaatcttccaggcgattggtgacattag 233  Q
    ||||||||||||||||||||||||||||| | ||||||||||| |  ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  24378930 ttgcagaaaatggaagaattatgggaagtttgacaggagtacagactgctaatgttgctgacaaaatctggttaatcttccaggcaattggtgacattag 24379029  T
Q  234 tttttcctatccatattcaattatccttcttgagatacaggaaccttaaaca 285  Q
    |||||||||||| || ||||| ||| ||||||||||||||| ||||||||||    
T  24379030 tttttcctatccgtactcaatgatctttcttgagatacaggtaccttaaaca 24379081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 134 - 285
Target Start/End: Original strand, 24401724 - 24401875
Alignment:
Q  134 ttgcagaaaatggaagaattatgggaagtataacaggagtacaaaaagctaaagttgctaacaaaatctggttaatcttccaggcgattggtgacattag 233  Q
    ||||||||||||||| | ||||||||||| | ||||||||||  |  ||||  |||||| |||||||||||| |||||||||||| ||||||||||||||    
T  24401724 ttgcagaaaatggaaaagttatgggaagtttgacaggagtaccgactgctagtgttgctgacaaaatctggtcaatcttccaggcaattggtgacattag 24401823  T
Q  234 tttttcctatccatattcaattatccttcttgagatacaggaaccttaaaca 285  Q
    ||||||||||||||| || ||  || ||||||||||||||| ||||||||||    
T  24401824 tttttcctatccatactcgatgctctttcttgagatacaggtaccttaaaca 24401875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24413867 - 24413922
Alignment:
Q  1 ttcattggactaggacttggcatatcaacagtcataagtaagactcattttcactc 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24413867 ttcattggactaggacttggcatatcaacagtcataagtaagactcattttcactc 24413922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24420094 - 24420039
Alignment:
Q  1 ttcattggactaggacttggcatatcaacagtcataagtaagactcattttcactc 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420094 ttcattggactaggacttggcatatcaacagtcataagtaagactcattttcactc 24420039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24401291 - 24401346
Alignment:
Q  1 ttcattggactaggacttggcatatcaacagtcataagtaagactcattttcactc 56  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||    
T  24401291 ttcattggactaggacttggcatagcaacagtcataagtaaggctcatcttcactc 24401346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24378457 - 24378512
Alignment:
Q  1 ttcattggactaggacttggcatatcaacagtcataagtaagactcattttcactc 56  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||||    
T  24378457 ttcattggacttggacttggcatagcaacagtcataagtaagtctcatcttcactc 24378512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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