View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_high_6 (Length: 439)
Name: NF12033_high_6
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 42224174 - 42223766
Alignment:
| Q |
18 |
gagccttgttcacgacgtcacgaaacgctctgccattgttggtacgacatgcattgtcttcaacattatgatgtatgttgcacctttagctgtgatggta |
117 |
Q |
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| T |
42224174 |
gagccttgttcacgacgtcgcgaaacgctctgccattgttggtacgacatgcattgtcttcaacattatgatgtatgttgcacctttagctgtgatggta |
42224075 |
T |
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| Q |
118 |
tgtaatcatcaaacaaacacttaatcttaattttttgtttggaagcgtttttattgaatttgaagtatttgataaaatttactattgctttgcagaaact |
217 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42224074 |
tgtaatcatcaaacaaacacttaatcttaatttttggtttggatgcgtttttattgaatttgaagtatttgataaaatttactattgctttgcagaaact |
42223975 |
T |
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| Q |
218 |
ggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggacaacttactctctcctccctttc |
317 |
Q |
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| T |
42223974 |
ggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggacaacttactctctcctccctttc |
42223875 |
T |
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| Q |
318 |
gacaaattcatcactgtaaacaagctaaatccnnnnnnnnnnnnnnnnnnnncctcgacatattgatgaaatagacgtaaagctaatgaatgaccattgc |
417 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223874 |
gacaaattcatcactgtaaacaaactaaatccttttgctttttttcctttttcctcgacatattgatgaaatagacgtaaagctaatgaatgaccattgt |
42223775 |
T |
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| Q |
418 |
tgttgttct |
426 |
Q |
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| T |
42223774 |
tgttgttct |
42223766 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 36675871 - 36675959
Alignment:
| Q |
207 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
295 |
Q |
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| T |
36675871 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36675959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 36685953 - 36686041
Alignment:
| Q |
207 |
ttgcagaaactggtgatcatgactaaaagcattgagtacatgccgctctccatatctcttgcttcctttggaaatggtgtggcttggac |
295 |
Q |
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||||||||||| ||||||| ||||||||| |||||| ||||||| | | | ||||| | ||||| ||||| |||||||| ||||||| |
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| T |
36685953 |
ttgcagaaactagtgatcaagactaaaagtgttgagttcatgccgtttttcctatctttagcttcatttggcaatggtgtttcttggac |
36686041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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