View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_high_9 (Length: 403)
Name: NF12033_high_9
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 41210623 - 41210366
Alignment:
| Q |
13 |
taggcaaaccactagactataacaacatggacaaaaggaaaatataagttcttgagtatacattcatttcatcaagaaatagatttattaaagg-nnnnn |
111 |
Q |
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| T |
41210623 |
taggcaaaccactagactataacaacatggacaaaaggaaaatataagttcttgagtatacattcatttcatcaagaaatagatttattaaaggaaaaaa |
41210524 |
T |
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| Q |
112 |
nnnngatacaaagagttgtatgtgatatgataaattttgtaattaaataaaataattacattgatnnnnnnnnttgtcttaaccctcgagatttcataag |
211 |
Q |
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| T |
41210523 |
aaaagatacaaagagttgtatgtgatatgataaattttgtaattaaataaaataattacattgataaaaaaaattgtcttaaccctcgagatttcataag |
41210424 |
T |
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| Q |
212 |
aagcgtgtctgtaaattcaaaatttgataggctaaaacgtgtatatagtctcatcaat |
269 |
Q |
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| T |
41210423 |
aagcatgtctgtaaattcaaaatttgataggctaaaacgtgtatatagtctcatcaat |
41210366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 271 - 402
Target Start/End: Complemental strand, 41210304 - 41210173
Alignment:
| Q |
271 |
atttattaactatttaaatttaatcacttgatttatacattaatttttattatcagtcaacaaaacccaattttttatgtcttagaaagttactggcgac |
370 |
Q |
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| T |
41210304 |
atttattaactatttaaatttaatcacttgatttatacattaatttttattatcagtcaacaaaacccaattttttatgtcttagaaagttactggcaac |
41210205 |
T |
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| Q |
371 |
aaatactctgcattttgcctttgctactccac |
402 |
Q |
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| T |
41210204 |
aaatactctacattttgcctttattactccac |
41210173 |
T |
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