View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12033_low_1 (Length: 1273)
Name: NF12033_low_1
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_1 |
 | |
|
| [»] scaffold0196 (2 HSPs) |
| | |
|
| [»] scaffold0019 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 1023; Significance: 0; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 1023; E-Value: 0
Query Start/End: Original strand, 9 - 1254
Target Start/End: Original strand, 12093957 - 12095217
Alignment:
| Q |
9 |
agcagagaccaaagtaggtgaaaaccaaaagagcataaggctgtatgccttttgtaatagtactgaagataacaatttttcttcaacaattcttaggatt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12093957 |
agcagagaccaaagtaggtgaaaaccaaaagagaataaggctgtatgccttttgtaataacactgaagataacaatttttgttcaacaattcttaggatt |
12094056 |
T |
|
| Q |
109 |
tcaatggaatttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggcca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
12094057 |
tcaatggaatttttaaaatgcatttcccatgcatataactttagcactttcatattcaccagagcctcagaactagccttcaacctttcatcttgggcca |
12094156 |
T |
|
| Q |
209 |
ccagaagtttacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatcc |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
12094157 |
ccagaagtttactaagatacttatgttgtaactttgctagtggagcattcaaaaacacggtcaaaactatcaccaccaatgacgcaattgttgccaatcc |
12094256 |
T |
|
| Q |
309 |
agtagcgcgaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatcc |
408 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
12094257 |
aatagcacgaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccagaacggaaattctccgattctatacgcatcc |
12094356 |
T |
|
| Q |
409 |
acgttcacatagttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacc |
508 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| ||||||| || | |
|
|
| T |
12094357 |
acattcacatagttcattatctcaccgctagagtgaatcaatctagcagcattggataatttcagttgtttcctataaatagatgcagtaagtaacgatc |
12094456 |
T |
|
| Q |
509 |
taactttcataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaacc |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
12094457 |
taactttcataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaaataacc |
12094556 |
T |
|
| Q |
609 |
ttcaaatttgaaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaat |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12094557 |
ttcaaatttgaaactttgattaccctcagccaccagtataaaggcattcaaaattataggacaagaagaaagagtgagtaccttgagaaatgcaaaaaat |
12094656 |
T |
|
| Q |
709 |
ccagatatcaaaatctctctccggtggcacaaaacgattgtccataacaccgatgatcgagatgatggatccttctgcttttttctattcaattgatcta |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
12094657 |
ccagatatcaaaatctctctccggtggcacaaaacgattgtccataacaccgatgatcgagatgatggatccttctgcttttttctattcgattgttcta |
12094756 |
T |
|
| Q |
809 |
taaataacgaataacatacttctgctctatccggctcttgcaactttgggatgtcctcgtcctcaagtgttttcttttgaccctttttcattagtggatt |
908 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12094757 |
taaataacgaataacatacttctgctctatccggctcttgcaactttgggatgtcctcgtcctcaagtgttttattttgaccctttttcattagtggatt |
12094856 |
T |
|
| Q |
909 |
caaccaccaaaatgacatccgactaaggagtccggctttggcaaatggggttac---------------aggatcaacatcatggatctggctatttaaa |
993 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12094857 |
caaccaccaaaatgacatccgactaaggagtccggctttggaaaatggggttacacttatacggccaagaggatcaacatcatggatctggctatttaaa |
12094956 |
T |
|
| Q |
994 |
ggggcatatagacttccatttatttccttgtcgacatgttcatctttacatactttgtatgtgcaaaagagcagcaaaattactcccaaaaaagatagaa |
1093 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12094957 |
gaagcatatagacttccatttatttccttgtcgacatcttcatctttacatactttgtatgtgcaaaagagcagcaaaattactcccaaaaaagatagaa |
12095056 |
T |
|
| Q |
1094 |
catctaaagcaactttaagggatgtttccttgctgctaaatgcataagataatgacaaagcacagaaaatactagaaacaaagaatgtaagaatagaaaa |
1193 |
Q |
| |
|
|||||||||| || |||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
12095057 |
catctaaagctaccttaagggacatttctttgctactaaatgcataagataatgacaatgcacagaaaataccagaaacaaagaatataagaatagaaaa |
12095156 |
T |
|
| Q |
1194 |
cattctcaaccatgttcttggaagttgtttcggcacaagacttatagttaaagaaactaag |
1254 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
12095157 |
cattcgccaccatgttcttggaagttgtttcggcacaagatttatagttaaaccaactaag |
12095217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 1011; E-Value: 0
Query Start/End: Original strand, 9 - 1254
Target Start/End: Complemental strand, 11755978 - 11754718
Alignment:
| Q |
9 |
agcagagaccaaagtaggtgaaaaccaaaagagcataaggctgtatgccttttgtaatagtactgaagataacaatttttcttcaacaattcttaggatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755978 |
agcagagaccaaagtaggtgaaaaccaaaagagcataaggctgtatgccttttgtaatagcactgaagataacaatttttcttcaacaattcttaggatt |
11755879 |
T |
|
| Q |
109 |
tcaatggaatttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggcca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11755878 |
tcaatggaatttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcctcagaactagctttcaacctttcatcttgggcca |
11755779 |
T |
|
| Q |
209 |
ccagaagtttacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatcc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11755778 |
ccagaagtttacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaaatatcaccaccaacgatgcaattgttgccaatcc |
11755679 |
T |
|
| Q |
309 |
agtagcgcgaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatcc |
408 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755678 |
aatagcgcgaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatcc |
11755579 |
T |
|
| Q |
409 |
acgttcacatagttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacc |
508 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755578 |
acgttcacatagttcattatctcaccgctagagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacc |
11755479 |
T |
|
| Q |
509 |
taactttcataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaacc |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
11755478 |
taactttcataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagattgccaaaaagtaacc |
11755379 |
T |
|
| Q |
609 |
ttcaaatttgaaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaat |
708 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11755378 |
ttcaaatttgaaactttgattaccctcagccaccagtataaaggcattcaatattataggacaagaagaaagagtgagtaccttgagaaatgcaaagaat |
11755279 |
T |
|
| Q |
709 |
ccagatatcaaaatctctctccggtggcacaaaacgattgtccataacaccgatgatcgagatgatggatccttctgcttttttctattcaattgatcta |
808 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11755278 |
ccagatatcaaaatctctctccggtggcaaaaaacaattgtccataacaccgatgatcgagatgatggatccttctgcttttttctattcaattgttcta |
11755179 |
T |
|
| Q |
809 |
taaataacgaataacatacttctgctctatccggctcttgcaactttgggatgtcctcgtcctcaagtgttttcttttgaccctttttcattagtggatt |
908 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
11755178 |
taaataacgaataacatacttctgctctatccgactcttgcaactttgggatgtctttgccctcgagtgttttcttttgaccctttttcatcagtggatt |
11755079 |
T |
|
| Q |
909 |
caaccaccaaaatgacatccgactaaggagtccggctttggcaaatggggtt---------------acaggatcaacatcatggatctggctatttaaa |
993 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| | ||||||| ||| |
|
|
| T |
11755078 |
caaccaccaaaatgacatccgactaaggagtccagctttggcaaatggggttagacttatatgtcgaacaggatcaacatcaaggacccggctattcaaa |
11754979 |
T |
|
| Q |
994 |
ggggcatatagacttccatttatttccttgtcgacatgttcatctttacatactttgtatgtgcaaaagagcagcaaaattactcccaaaaaagatagaa |
1093 |
Q |
| |
|
||||||||||||||||||| || ||||||||| || ||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||| |
|
|
| T |
11754978 |
ggggcatatagacttccatctacttccttgtcagtatcttcatctttacatactttgtatgtgcagaagagcagtaaaagtactcccaaaaaagatagaa |
11754879 |
T |
|
| Q |
1094 |
catctaaagcaactttaagggatgtttccttgctgctaaatgcataagataatgacaaagcacagaaaatactagaaacaaagaatgtaagaatagaaaa |
1193 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||||| |||| ||||||| ||||||||||| ||||||| ||||||||| ||| |||| |||| ||| |
|
|
| T |
11754878 |
catctaaagctatcttaagggacagttccttgctgctaagtgcaaaagataaggacaaagcacataaaataccagaaacaaaaaatataagcatagtaaa |
11754779 |
T |
|
| Q |
1194 |
cattctcaaccatgttcttggaagttgtttcggcacaagacttatagttaaagaaactaag |
1254 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
11754778 |
cagtctcaagcatgttcttggaagttgtttcggcagaagacttatagttaaagcaactaag |
11754718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 117 - 1245
Target Start/End: Original strand, 11739837 - 11740983
Alignment:
| Q |
117 |
atttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagt |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | |||||||| ||||| ||||| || |||||||| || |||||||||||||| ||||| |||||| |
|
|
| T |
11739837 |
atttttaaaatgggtttcccatgcatataacttcaacactttcacattcactagagcctcggaactagcctttaacctttcatcttgtgccacgagaagt |
11739936 |
T |
|
| Q |
217 |
ttacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatccagtagcgc |
316 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||| || ||| | |||||||||||||||||||||||||||||||| || | ||| || | |
|
|
| T |
11739937 |
ttgcttagatacttatgttgtaactttgctagtggagtatttaatagcgccgtcaaaactatcaccaccaacgatgcaattgtcgcaagcccaaccgcac |
11740036 |
T |
|
| Q |
317 |
gaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatccacgttcac |
416 |
Q |
| |
|
|||||| ||| || |||| ||| |||||||||| | ||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||| |
|
|
| T |
11740037 |
gaaaaataatgaccaatgaaatacatagttggagaaatgttgtccatgaatggtgaaaccaaaacggtaattctccaattctataagcatccacattcac |
11740136 |
T |
|
| Q |
417 |
atagttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacctaactttc |
516 |
Q |
| |
|
||| ||||||||||| || | |||||||||||| |||||||||||||||| ||| |||||||||||||| | ||| | |||||||||| |||||||| |
|
|
| T |
11740137 |
ataattcattatctcgccaccagagtgaatcaatttagcagcattggataacctcagttgtttcttataaacggctgcgacaagtaatgacttaactttc |
11740236 |
T |
|
| Q |
517 |
ataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaaccttcaaatt |
616 |
Q |
| |
|
||||||| || || | |||||||||||| |||||||| |||| ||| |||| ||| || ||||||||||||||||||| || | |||| |||| ||| |
|
|
| T |
11740237 |
ataccaacaagtctagcgcgaaaataccactgcctttgggataaggattctataatttttgtaaacaaaagtgagatggctaatacataactttcatatt |
11740336 |
T |
|
| Q |
617 |
tgaaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatat |
716 |
Q |
| |
|
|| |||||| |||| |||| ||| ||| |||||||||||||||| |||||||||| ||||||| | |||||||||||| |||||||||||||| ||||| |
|
|
| T |
11740337 |
tggaactttcattatcctcggccgccaaaataaaggcattcaaaattataggacaacaagaaagtgcgagtaccttgagtaatgcaaagaatcctgatat |
11740436 |
T |
|
| Q |
717 |
caaaatctctctccggtggcacaaaacgattgtccataacaccgatgatcgagatgatg---gatccttctgcttttttctattcaattgatctataaat |
813 |
Q |
| |
|
|||||| ||||| || |||||||||| ||||||| ||| ||| | || | ||||||| |||||||||||| ||| |||| |||||||||||| |
|
|
| T |
11740437 |
caaaatttctctacgatggcacaaaattattgtccgtaaaaccaacgaccatgatgatgattcgtccttctgctttagtctgttcagttgatctataaac |
11740536 |
T |
|
| Q |
814 |
aacgaataacatacttctgctctatccggctcttgcaactttgggatgtcctcgtcctcaagtgttttcttttgaccctttttcattagtggattcaacc |
913 |
Q |
| |
|
| ||||||||| ||||||||| || | ||| ||||| |||| | ||||||||| | |||| |||| | ||| ||| |||| || | ||||||||||| |
|
|
| T |
11740537 |
attgaataacatgcttctgctcggtcagactcccgcaacgttggaacgtcctcgtcatgaagtattttttcttgtccccttttaatcaatggattcaacc |
11740636 |
T |
|
| Q |
914 |
accaaaatgacatccgactaaggagtccggctttggcaaatggggtt---------------acaggatcaacatcatggatctggctatttaaaggggc |
998 |
Q |
| |
|
|||||||||||||| ||||| || ||| ||||||| ||| | ||| ||| ||||||| |||| | || ||||||||| |||| |
|
|
| T |
11740637 |
accaaaatgacatcaaactaaagaatcctgctttggaaaactgagttacacttacatgactaacatgatcaacttcattcaactcgctatttaatggggt |
11740736 |
T |
|
| Q |
999 |
atatagacttccatttatttccttgtcgacatgttcatctttacatactttgtatgtgcaaaagagcagcaaaattactcccaaaaaagatagaacatct |
1098 |
Q |
| |
|
| ||||||||| | |||||| ||||| | ||||| |||| |||||||||||||||||||| ||||||| | |||||||||| |||| ||||||| |
|
|
| T |
11740737 |
acgtagacttccgtcgatttccatgtcggtgtcttcatacgtacacactttgtatgtgcaaaagagtagcaaaaatgctcccaaaaatgataaaacatct |
11740836 |
T |
|
| Q |
1099 |
aaagcaactttaagggatgtttccttgctgctaaatgcataagataatgacaaagcacagaaaatactagaaacaaagaatgtaagaatagaaaacattc |
1198 |
Q |
| |
|
||| | | ||||||| ||| ||| ||||||||||||||| || |||||||| ||||||||||||||||| ||| |||||| |||||| | || |
|
|
| T |
11740837 |
aaaactaacctaagggacaattcgccactgtgaaatgcataagataaggaaaaagcacaaaaaatactagaaacaaaaaatataagaaaagaaaatagtc |
11740936 |
T |
|
| Q |
1199 |
tcaaccatgttcttggaagttgtttcggcacaagacttatagttaaa |
1245 |
Q |
| |
|
||||||||||||||||||||| |||| ||| || |||| |||||||| |
|
|
| T |
11740937 |
tcaaccatgttcttggaagttttttcagcagaaaacttgtagttaaa |
11740983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 169; E-Value: 5e-90
Query Start/End: Original strand, 117 - 765
Target Start/End: Original strand, 11632002 - 11632650
Alignment:
| Q |
117 |
atttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagt |
216 |
Q |
| |
|
|||||||||||| ||||||| ||||| ||||| | ||||||||| ||||| ||||| || |||||||| || || || |||||||| ||||||| |||| |
|
|
| T |
11632002 |
atttttaaaatgattttcccacgcatacaacttcaacactttcatattcacaagagcctccgaactagcctttaatctctcatcttgtgccaccataagt |
11632101 |
T |
|
| Q |
217 |
ttacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatccagtagcgc |
316 |
Q |
| |
|
|| || ||||||| ||||||||||||||||||||| ||| ||| ||| || | |||||||||| |||| ||||||| ||||| | |||| | | || |
|
|
| T |
11632102 |
ttgctctgatacttgtgttgtaactttgctagtggataattgcaaatcacagtgagaactatcaccgccaatgatgcaagcgttgctagtccaattgtgc |
11632201 |
T |
|
| Q |
317 |
gaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatccacgttcac |
416 |
Q |
| |
|
| |||||||||||||||||||| | | |||||| | |||||||||||||||||||||||| || |||||||||||||||||||| ||||| ||| ||| |
|
|
| T |
11632202 |
ggaaaagaattactaatgcaatacacaattggagaattgttgtccatgtctggtgaaaccagaatggaaattctccgattctataagcatctacgatcat |
11632301 |
T |
|
| Q |
417 |
atagttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacctaactttc |
516 |
Q |
| |
|
|| |||||||||||||| | ||||||||||| ||||||| ||| |||| ||| |||||||||||| | |||| |||||| ||| ||||||||| |
|
|
| T |
11632302 |
gtaattcattatctcaccaccagagtgaatcaacctagcagaattcgatagccgtaatattttcttataaatggctgcattaagtagtgatctaactttc |
11632401 |
T |
|
| Q |
517 |
ataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaaccttcaaatt |
616 |
Q |
| |
|
|| |||| || || | | | ||||||||||| ||||| |||||||| |||| || || |||| || ||||| | |||||| | ||||||||| ||| |
|
|
| T |
11632402 |
atcccaacaagtctagtgtggaaataccattgtctttgtgatagggattctatgatttttataacaaagagtgaaacggccaatacataaccttcatatt |
11632501 |
T |
|
| Q |
617 |
tgaaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatat |
716 |
Q |
| |
|
||||||||| |||||||| || |||| ||| |||||||| | || || |||| |||||| |||| ||||||||| | || ||||||||||| | || |
|
|
| T |
11632502 |
tgaaactttcgttaccctcggcaaccaatatgaaggcattaagaagtagaggagtagaagatagagcgagtaccttaaacaacgcaaagaatccggttac |
11632601 |
T |
|
| Q |
717 |
caaaatctctctccggtggcacaaaacgattgtccataacaccgatgat |
765 |
Q |
| |
|
|||||||||||||| |||||||||| ||| |||||||| ||||||||| |
|
|
| T |
11632602 |
caaaatctctctccaatggcacaaaaagatggtccataaaaccgatgat |
11632650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 158; E-Value: 2e-83
Query Start/End: Original strand, 119 - 764
Target Start/End: Complemental strand, 11663044 - 11662399
Alignment:
| Q |
119 |
ttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagttt |
218 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||| |||| ||||| ||||||||||| ||||| || || ||||| ||||||| ||||| |
|
|
| T |
11663044 |
ttttaaaatgtgtttcccatgcatatagctttagcactttcatactcacaagagcctcagaactagccttcaatctctcgtcttgtgccaccataagttc |
11662945 |
T |
|
| Q |
219 |
acttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatccagtagcgcga |
318 |
Q |
| |
|
||| || |||| ||||| |||||||||||||||| || |||||| || | ||||||||| ||| || || |||||||| |||| | || | | |
|
|
| T |
11662944 |
actctgaaacttgtgttgcaactttgctagtggagtgttgcaaagcatcgtgagaactatcactgccattgaagctattgttgctggtccaattgcacca |
11662845 |
T |
|
| Q |
319 |
aaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatccacgttcacat |
418 |
Q |
| |
|
|||||||||||||||||||| | | |||||||| ||| ||||| |||||||||||||| || ||||||||||| |||||||| | ||||| ||| || |
|
|
| T |
11662844 |
aaaagaattactaatgcaatacacatttggaggattgtggtccaagtctggtgaaaccagaatggaaattctccaattctataagtgtccacagtcatat |
11662745 |
T |
|
| Q |
419 |
agttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacctaactttcat |
518 |
Q |
| |
|
| ||||||||||| || |||||||||||||||||||||| |||||||| | | ||| ||| ||||||| ||| |||||| ||| ||||||||||| |
|
|
| T |
11662744 |
aattcattatctcgccactcgagtgaatcaatctagcagaattggatagtcttaatgtttttttataaacgactgcggtaagtagtgatctaactttcat |
11662645 |
T |
|
| Q |
519 |
accaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaaccttcaaatttg |
618 |
Q |
| |
|
|||| || ||| ||||||||||||||| || || |||| ||| |||| ||||| || || |||||||| |||||||| | ||||||||| ||||| |
|
|
| T |
11662644 |
gccaacaagtcttccgcgaaaataccattgtctctgtgatatggattctatgatctttatgaagaaaagtgatatggccaatatataaccttcatatttg |
11662545 |
T |
|
| Q |
619 |
aaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatatca |
718 |
Q |
| |
|
||||||| ||| ||||||| |||| |||||| ||||| | || || ||| | | |||| | || ||||||||||| || ||||||||||| | ||| | |
|
|
| T |
11662544 |
aaactttcatttccctcagaaaccaatataaaagcattaagaagtaaagggccacaagatatagcaagtaccttgagcaaagcaaagaatcctgttatta |
11662445 |
T |
|
| Q |
719 |
aaatctctctccggtggcacaaaacgattgtccataacaccgatga |
764 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||||||||| |||||||| |
|
|
| T |
11662444 |
aaatctctcttcggtggcaccgaactattgtccataaaaccgatga |
11662399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 145; E-Value: 1e-75
Query Start/End: Original strand, 117 - 761
Target Start/End: Complemental strand, 11618230 - 11617586
Alignment:
| Q |
117 |
atttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagt |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| | ||||||||| ||||| ||||| || ||||| || || || || |||||||| ||||||| |||| |
|
|
| T |
11618230 |
atttttaaaatgtgtttcccatgcatatagcttcaacactttcatattcacaagagcctccgaactcgcctttaatctctcatcttgcgccaccataagt |
11618131 |
T |
|
| Q |
217 |
ttacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatccagtagcgc |
316 |
Q |
| |
|
| || || |||| |||||||| |||||||||||||| || ||||||| || | ||||||||||||||| ||||| | |||||| | |||| | | || |
|
|
| T |
11618130 |
tgggtttgaaacttgtgttgtaagtttgctagtggagcgttgcaaagcacagtgagaactatcaccaccaatgatgcgagtgttgctagtccaattgtgc |
11618031 |
T |
|
| Q |
317 |
gaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatccacgttcac |
416 |
Q |
| |
|
| |||||||||| |||||||| | | ||||||| ||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| || | || |
|
|
| T |
11618030 |
ggaaaagaattatcaatgcaatacacaattggaggcttgttgtccaagtctggtgaaaccaaaatggaaattctccaattctataagcatcgacagtaac |
11617931 |
T |
|
| Q |
417 |
atagttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacctaactttc |
516 |
Q |
| |
|
||| |||||||||||||| | |||||| |||||||||| | ||| |||| | || ||| |||||| | | |||| ||||||| || | || |||| |
|
|
| T |
11617930 |
ataattcattatctcaccaccagagtgattcaatctagccgaatttgatagacttaacatttttttataagtggctgcagtaagtaaagatcgaattttc |
11617831 |
T |
|
| Q |
517 |
ataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaaccttcaaatt |
616 |
Q |
| |
|
| |||| || || ||| ||||||||||| |||||||||| || |||| ||||| | || || | ||| ||||| || || ||||||||| ||| |
|
|
| T |
11617830 |
actccaacaagtctactgcggaaataccattgtctttgagatatagattctatgatctttacaaggaagattgatatggctaataaataaccttcatatt |
11617731 |
T |
|
| Q |
617 |
tgaaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatat |
716 |
Q |
| |
|
||||||||| |||||| ||||| |||| |||||| |||||| || ||||||| |||||| || ||||||||||||||||| || |||||||| | ||| |
|
|
| T |
11617730 |
tgaaactttcattaccttcagcaaccaatataaattcattcagaatcataggaccagaagatagtgtgagtaccttgagaaaagcgaagaatcctgttat |
11617631 |
T |
|
| Q |
717 |
caaaatctctctccggtggcacaaaacgattgtccataacaccga |
761 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
11617630 |
caaaatctctctcttgtggcacaaaattattgtccataaaaccga |
11617586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 136; E-Value: 3e-70
Query Start/End: Original strand, 112 - 755
Target Start/End: Original strand, 11674018 - 11674661
Alignment:
| Q |
112 |
atggaatttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccacca |
211 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||| | ||||||||| ||||| ||||| |||||||| ||||| || || |||||||| ||||||| |
|
|
| T |
11674018 |
atggaatttttaaaatgggtttcccatgcatatagcttcaacactttcatattcacaagagcctcagaactcgcttttaatctctcatcttgcgccacca |
11674117 |
T |
|
| Q |
212 |
gaagtttacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatccagt |
311 |
Q |
| |
|
||||| || || |||| ||||||| ||||||||| |||| || |||||||||| | || |||||| |||| || || | ||||| | ||| | |
|
|
| T |
11674118 |
ttagtttgctctgaaacttgtgttgtagctttgctagcggagtgttgcaaagcacggtgagaattatcactaccagtgaagctacggttgcaagtccgat |
11674217 |
T |
|
| Q |
312 |
agcgcgaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatccacg |
411 |
Q |
| |
|
|| ||||||||||| ||||||||||| | ||||| || | ||||||||| |||| |||||||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
11674218 |
tgcacgaaaaagaatcactaatgcaatacacagttgaagaattgttgtccaagtcttgtgaaaccaaaatggaaattctccaattctataagcatccaca |
11674317 |
T |
|
| Q |
412 |
ttcacatagttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacctaa |
511 |
Q |
| |
|
||| ||| ||||||||||| || || ||||||| |||||||||| ||||||| | ||| ||| |||| ||| | |||| |||||| ||| || | |
|
|
| T |
11674318 |
gtcatataattcattatctcgccactagagtgaactaatctagcagagttggatagccttaatatttttttatgaatggctgcagtaagtagtgatctga |
11674417 |
T |
|
| Q |
512 |
ctttcataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaaccttc |
611 |
Q |
| |
|
| ||||| || |||| ||| || ||||||||||| | ||| |||| ||| |||| ||||| ||||| |||||||| || ||||| | |||||||| |
|
|
| T |
11674418 |
ccttcatccctataagcctactacggaaataccattgtcgttgcgataaggattctaggatctttataaagaaaagtgatattgccaatacataaccttc |
11674517 |
T |
|
| Q |
612 |
aaatttgaaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatcca |
711 |
Q |
| |
|
| ||| ||||||| ||| || ||||| |||| |||||| |||||| || || ||||| |||||| ||||||||||||||||| || ||||||||||| |
|
|
| T |
11674518 |
atattcaaaacttttattgccttcagcaaccaatataaactcattcagaagtaaaggaccagaagatagagtgagtaccttgagcaaagcaaagaatccg |
11674617 |
T |
|
| Q |
712 |
gatatcaaaatctctctccggtggcacaaaacgattgtccataa |
755 |
Q |
| |
|
| ||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
11674618 |
gttatcaaaatctctctttggtggcacgcaattattgtccataa |
11674661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 120; E-Value: 9e-61
Query Start/End: Original strand, 117 - 764
Target Start/End: Original strand, 11710547 - 11711194
Alignment:
| Q |
117 |
atttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagt |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||| || |||||||| ||||| || || ||||| ||||||| |||| |
|
|
| T |
11710547 |
atttttaaaatggttttcccatgcatataacttgagcactttcatattcacaagagcctcggaactagccttcaatctctcgtcttgtgccaccataagt |
11710646 |
T |
|
| Q |
217 |
ttacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatccagtagcgc |
316 |
Q |
| |
|
| || || |||| | |||||||||||||| ||||| || ||||||| |||| |||||||||||||| || || |||||||| | |||| | || | |
|
|
| T |
11710647 |
tcgctctgaaacttgttttgtaactttgctattggagtgttgcaaagcacagtcagaactatcaccaccattgaagctattgttgctagtccaattgctc |
11710746 |
T |
|
| Q |
317 |
gaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatccacgttcac |
416 |
Q |
| |
|
| ||||||||||||||||||| | | ||| |||| ||| |||||||||||||||||||| || ||||||||||| |||||||| |||||||| | | |
|
|
| T |
11710747 |
ggtaaagaattactaatgcaatacacaattgaaggattgtcgtccatgtctggtgaaaccagaatggaaattctccaattctataagcatccacagttat |
11710846 |
T |
|
| Q |
417 |
atagttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacctaactttc |
516 |
Q |
| |
|
|| |||||||||||||| || ||||||||||||||||||| |||||||| | | | || |||||||| ||| |||||| ||| || |||||| |
|
|
| T |
11710847 |
gtaattcattatctcaccactagagtgaatcaatctagcagaattggatagccttagtatctttttataaatgtttgcggtaagtagtgatctcactttc |
11710946 |
T |
|
| Q |
517 |
ataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaaccttcaaatt |
616 |
Q |
| |
|
|| |||| || || | | ||||||||||| ||||| |||| |||||||| ||||| || || |||||| | || |||| || |||||| ||| |
|
|
| T |
11710947 |
atcccaacaagtctacattggaaataccattgtctttgtgataaggactctatgatctttatgaagaaaagtaatataaccaatgcatagccttcatatt |
11711046 |
T |
|
| Q |
617 |
tgaaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatat |
716 |
Q |
| |
|
||||||||| |||||| |||| || | |||||| ||||||| || || ||| | | |||| | | ||||||||||| || || |||||||| | ||| |
|
|
| T |
11711047 |
tgaaactttcattaccttcagaaactaatataaacgcattcagaagtagagggccacaagatattgcaagtaccttgagcaaagcgaagaatcccgttat |
11711146 |
T |
|
| Q |
717 |
caaaatctctctccggtggcacaaaacgattgtccataacaccgatga |
764 |
Q |
| |
|
|| ||| ||||||| |||||||||| ||||||||||| |||||||| |
|
|
| T |
11711147 |
cagaatatctctcctatggcacaaaattattgtccataataccgatga |
11711194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 850 - 959
Target Start/End: Original strand, 11711250 - 11711359
Alignment:
| Q |
850 |
aactttgggatgtcctcgtcctcaagtgttttcttttgaccctttttcattagtggattcaaccaccaaaatgacatccgactaaggagtccggctttgg |
949 |
Q |
| |
|
||||||||||| || || || | ||||||||| | ||||||| ||||||| | ||||||||||||||||| || ||| ||||| || ||| ||||||| |
|
|
| T |
11711250 |
aactttgggatatcgtcatcttgaagtgttttttgttgaccccttttcatcaacggattcaaccaccaaaaagatatcttactaaagaatccagctttgg |
11711349 |
T |
|
| Q |
950 |
caaatggggt |
959 |
Q |
| |
|
|||||||||| |
|
|
| T |
11711350 |
caaatggggt |
11711359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1040 - 1103
Target Start/End: Complemental strand, 11617301 - 11617238
Alignment:
| Q |
1040 |
tacatactttgtatgtgcaaaagagcagcaaaattactcccaaaaaagatagaacatctaaagc |
1103 |
Q |
| |
|
||||| ||||||||||||| || | ||||||| || |||| | ||||||||||||||||||||| |
|
|
| T |
11617301 |
tacatgctttgtatgtgcataacaacagcaaagttgctcctagaaaagatagaacatctaaagc |
11617238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 850 - 920
Target Start/End: Complemental strand, 11617497 - 11617427
Alignment:
| Q |
850 |
aactttgggatgtcctcgtcctcaagtgttttcttttgaccctttttcattagtggattcaaccaccaaaa |
920 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| | ||||| ||||||| | |||||||||||||||||| |
|
|
| T |
11617497 |
aactttgggatatcatcgtctagaagtgttttctctagacccgttttcatcaatggattcaaccaccaaaa |
11617427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 150; Significance: 1e-78; HSPs: 2)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 150; E-Value: 1e-78
Query Start/End: Original strand, 118 - 755
Target Start/End: Complemental strand, 12581 - 11944
Alignment:
| Q |
118 |
tttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagtt |
217 |
Q |
| |
|
||||||||||| ||||||||||||||| || | ||||||||| ||| ||||||||||||||| | || || || || ||||| |||| || ||||| |
|
|
| T |
12581 |
tttttaaaatggttttcccatgcatatagtttcaacactttcatattcgtgagagcttcagaactaacctttaatctctcgtcttgtgccaacataagtt |
12482 |
T |
|
| Q |
218 |
tacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatccagtagcgcg |
317 |
Q |
| |
|
|||| || | || | ||||||||||| |||||||||||| |||||||||| | |||||||||| ||| ||||| | |||||| | |||| | | ||| |
|
|
| T |
12481 |
tactctgaaatttgtattgtaactttgatagtggagcattgcaaagcacggtgagaactatcaccgccattgatgctagtgttgctagtccaattgtgcg |
12382 |
T |
|
| Q |
318 |
aaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatccacgttcaca |
417 |
Q |
| |
|
||||| |||||||||||||| | | |||||||| ||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||| ||| | |
|
|
| T |
12381 |
gaaaaggattactaatgcaatacacaattggaggattgttgtccaagtttggtgaaaccaaaatggaaattctccaattctataagcatccaccgtcata |
12282 |
T |
|
| Q |
418 |
tagttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacctaactttca |
517 |
Q |
| |
|
|| |||||||| ||||| | ||||||| |||||| || | ||||||||| | ||| ||| ||| |||| | |||| ||||| ||| |||||||||| |
|
|
| T |
12281 |
taattcattatttcaccacctgagtgaaccaatctcgctgtattggataaccttaatatttttttagaaatggttgcagtaagttgtgatctaactttca |
12182 |
T |
|
| Q |
518 |
taccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaaccttcaaattt |
617 |
Q |
| |
|
| |||| || || | ||| ||||||||||| ||||| |||||||| |||| || || ||||| || ||||| ||||| || | ||||||||| |||| |
|
|
| T |
12181 |
ttccaacaagtctagtgcggaaataccattgtctttgtgatagggattctatgatttttataaagaagagtgacatggctaatatataaccttcatattt |
12082 |
T |
|
| Q |
618 |
gaaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatatc |
717 |
Q |
| |
|
|||||||| |||||||||||| |||| ||||||||| |||| || || |||| | |||| |||| ||||||||||| ||| ||||| || || | || | |
|
|
| T |
12081 |
gaaactttcattaccctcagcaaccattataaaggcgttcagaagtagaggagtaaaagatagagcgagtaccttgaaaaaagcaaacaacccggttacc |
11982 |
T |
|
| Q |
718 |
aaaatctctctccggtggcacaaaacgattgtccataa |
755 |
Q |
| |
|
||||| |||||| ||||||| |||| |||||||||||| |
|
|
| T |
11981 |
aaaatttctctctggtggcataaaatgattgtccataa |
11944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 853 - 923
Target Start/End: Complemental strand, 11846 - 11776
Alignment:
| Q |
853 |
tttgggatgtcctcgtcctcaagtgttttcttttgaccctttttcattagtggattcaaccaccaaaatga |
923 |
Q |
| |
|
|||||||| ||||| |||| ||||||||| | ||||| | ||||||| | |||||| |||||||||||||| |
|
|
| T |
11846 |
tttgggatatcctcatcctgaagtgttttttcttgactcgttttcatcaatggatttaaccaccaaaatga |
11776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 1e-53; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 131 - 750
Target Start/End: Complemental strand, 44811617 - 44810998
Alignment:
| Q |
131 |
tttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagtttacttagatactt |
230 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||| ||||| |||||| |||| ||||| || |||||||| || |||| |||||| ||| || |||| |
|
|
| T |
44811617 |
tttcccatgcatataacttcagcaccttcatattcacaagagcctcagaagtagccttcaatctctcatcttgtgctaccataagtttgctttgaaactt |
44811518 |
T |
|
| Q |
231 |
atgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatccagtagcgcgaaaaagaattact |
330 |
Q |
| |
|
|||||||||||||| | ||| ||||| |||| || || | |||||| || |||| || |||||||| || | ||| ||||||| ||||| ||||| |
|
|
| T |
44811517 |
gtgttgtaactttgcaattggtgcattacaaagtacagtgataactatgactaccagggaggcaattgtagctatcccaatagcgcggaaaagtattacc |
44811418 |
T |
|
| Q |
331 |
aatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatccacgttcacatagttcattatct |
430 |
Q |
| |
|
|| | || |||| |||| | || |||||||| ||||||||||| | |||||||||||||||||||| |||||||| ||||||| |||||||| | |
|
|
| T |
44811417 |
aacgagatacatagctggaagctagtagtccatgtttggtgaaaccagtaaggaaattctccgattctataagcatccacagtcacataattcattattt |
44811318 |
T |
|
| Q |
431 |
caccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacctaactttcataccaataaccct |
530 |
Q |
| |
|
||||||| ||||| |||||||||||| ||||||||| ||| ||| || |||||||| |||| | || | ||||||||||| | ||| | | || |
|
|
| T |
44811317 |
caccgctagagtgcgtcaatctagcagaattggataacctcagttgctttttataaatcactgcagttagaagagacctaactttgagaccgacgagtct |
44811218 |
T |
|
| Q |
531 |
tgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaaccttcaaatttgaaactttgatta |
630 |
Q |
| |
|
||| | |||||||| |||||||||||||| || |||| ||| || ||||| ||||||| |||||||| | |||||||| |||||||||| | | | |
|
|
| T |
44811217 |
cgagtggaaataccactgcctttgagatagagattctataatttttataaagaaaagtgctatggccaatacaaaaccttcatatttgaaactctcaaaa |
44811118 |
T |
|
| Q |
631 |
ccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatatcaaaatctctctcc |
730 |
Q |
| |
|
|| || | || | |||||||| ||||| || | || | |||||| || | |||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
44811117 |
ccttcgacgactaatataaaggaattcagaagcaatggtccagaagacagtgcaagtaccttaagcaatgcaaagaatccagatatcaaaatttctctcg |
44811018 |
T |
|
| Q |
731 |
ggtggcacaaaacgattgtc |
750 |
Q |
| |
|
||| |||||||| |||||| |
|
|
| T |
44811017 |
agtgacacaaaactattgtc |
44810998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 101; Significance: 2e-49; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 117 - 761
Target Start/End: Original strand, 8951 - 9595
Alignment:
| Q |
117 |
atttttaaaatgcatttcccatgcatataactttagcactttcatgttcaccagagcttcagaactagctttcaacctttcatcttgggccaccagaagt |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| | ||||||||| | || | || ||| ||||||| || || || |||||||| ||||||| |||| |
|
|
| T |
8951 |
atttttaaaatgtgtttcccatgcatataacttcaacactttcatagtaacaaaagactcaaaactagcctttaatctctcatcttgtgccaccataagt |
9050 |
T |
|
| Q |
217 |
ttacttagatacttatgttgtaactttgctagtggagcattcaaaagcacggtcaaaactatcaccaccaacgatgcaattgttgccaatccagtagcgc |
316 |
Q |
| |
|
| ||| || |||| || | |||||| ||||| ||||||| |||||| || | || ||||| |||| ||||| | |||| | |||| | | || |
|
|
| T |
9051 |
tgcctttgaaacttgtgctctaacttggctaggcgagcattgcaaagcatagtgagaattatcattgccaatgatgctagaattgctagtccaattgtgc |
9150 |
T |
|
| Q |
317 |
gaaaaagaattactaatgcaattgatagttggaggactgttgtccatgtctggtgaaaccaaaacggaaattctccgattctataggcatccacgttcac |
416 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||| ||||||||| |||||||||||||||| |||||||||||| |||||||| ||||| ||| | | |
|
|
| T |
9151 |
ggaaaagaattactaatgcaatacacagttggaggcttgttgtccaagtctggtgaaaccaaaccggaaattctccaattctataagcatctacgattat |
9250 |
T |
|
| Q |
417 |
atagttcattatctcaccgctcgagtgaatcaatctagcagcattggataatttcaattgtttcttataaattgatgcaataagtaatgacctaactttc |
516 |
Q |
| |
|
||| || ||||||||||| || ||||||||||||||||||| |||||| || | ||| ||| |||||||| |||||| |||||| ||| ||||||||| |
|
|
| T |
9251 |
ataattgattatctcaccactagagtgaatcaatctagcagaattggacaaccttaatatttttttataaatggatgcattaagtagtgatctaactttc |
9350 |
T |
|
| Q |
517 |
ataccaataacccttgagcgaaaataccattgcctttgagatagggactctaaaatcttgataaacaaaagtgagatggccaaaaagtaaccttcaaatt |
616 |
Q |
| |
|
|| |||| || || || ||||||||||| ||||| |||| ||| | | ||||| ||||| || ||||| || || || | ||||| | | | | |
|
|
| T |
9351 |
atcccaacaagtctactccggaaataccattgtctttgtgatacggatccaatgatctttataaagaagagtgatatcgctaatatataaccctgataat |
9450 |
T |
|
| Q |
617 |
tgaaactttgattaccctcagccaccagtataaaggcattcaaaactataggacaagaagaaagagtgagtaccttgagaaatgcaaagaatccagatat |
716 |
Q |
| |
|
|||||||| ||| || ||||| ||| |||||| |||||| || || ||||| ||||| |||| ||||||||||| || ||||||| ||| | ||| |
|
|
| T |
9451 |
tgaaacttgtattgccttcagcaaccgatataaattcattcagaaatagaggaccagaagttagagcaagtaccttgagcaaagcaaagagtcctgttat |
9550 |
T |
|
| Q |
717 |
caaaatctctctccggtggcacaaaacgattgtccataacaccga |
761 |
Q |
| |
|
||||||||||||| ||| |||||||| |||||||| || ||||| |
|
|
| T |
9551 |
caaaatctctctctggtagcacaaaattattgtccaaaagaccga |
9595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 850 - 920
Target Start/End: Original strand, 9684 - 9754
Alignment:
| Q |
850 |
aactttgggatgtcctcgtcctcaagtgttttcttttgaccctttttcattagtggattcaaccaccaaaa |
920 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||| ||||||| ||||||| | |||||| ||||||||||| |
|
|
| T |
9684 |
aacttcgggatatcctcgtctacaagtgttttctcttgaccccttttcatcaatggatttaaccaccaaaa |
9754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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