View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_12 (Length: 394)
Name: NF12033_low_12
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 35520018 - 35520393
Alignment:
| Q |
1 |
agttgcacggtgcctgaaattgtggcaatggttttctggccattaggtaagacataaacacatgagaaattgtgtgataagagataaagttatgtaagga |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
35520018 |
agttgcacggtgcctgaaattgtggcaatggttttatggccattaggtaagacataaacacatgagaaattgtgtgataagagacaaaattatgtaagga |
35520117 |
T |
|
| Q |
101 |
atgtgtgatatggtcaatggcaccagaatctacaacccagtggtcaaagatcttaccaaaagtgggagaagagaatgaacttaaagctgcaggattagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35520118 |
atgtgtgatatggtcaatggcaccagaatctacaacccagtggtcagagatcttaccaaaagtgggagaagaggatgaacttaaagctgcaggattagat |
35520217 |
T |
|
| Q |
201 |
ataacagagttgatagaaggttgattgggactaggatttgagggtgtcgatgaagcttgtaatgttgaatgctgtagaagctgtaaaatatgattatacc |
300 |
Q |
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||||||||||||| | |||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35520218 |
ataacagagttgacaaaaggttgattgggactaggattcgagggtcttgatgaagcttgtaatgttgaatgctgtagaagctgtaaaatatgattatacc |
35520317 |
T |
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| Q |
301 |
gctcttgaatggtgttgatagtagctggagtgggattggtgtggctttccctttgtgggccattagaagcagtagc |
376 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35520318 |
gctcttgaatggtgttgatagtagctggagtgcgattggtgtggctttctctttgtgggccattagaagcagtagc |
35520393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 33766081 - 33765705
Alignment:
| Q |
1 |
agttgcacggtgcctgaaattgtggcaatggttttctggccattaggtaag-acataaacacatgagaaattgtgtgataagagataaagttatgtaagg |
99 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
33766081 |
agttgcacggtgcctgaaattgtggcaatggttttctagccattagataaggacataaacacaggagaaattgtgtgataagagacaaagttatgtaagg |
33765982 |
T |
|
| Q |
100 |
aatgtgtgatatggtcaatggcaccagaatctacaacccagtggtcaaagatcttaccaaaagtgggagaagagaatgaacttaaagctgcaggattaga |
199 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33765981 |
aatgtgtgatatggtcagtggcaccagaatctacaacccagtggtcagagatcttaccaaaagtgggagaagaggatgaacttaaagctgcaggattaga |
33765882 |
T |
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| Q |
200 |
tataacagagttgatagaaggttgattgggactaggatttgagggtgtcgatgaagcttgtaatgttgaatgctgtagaagctgtaaaatatgattatac |
299 |
Q |
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|||||||||||||| |||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
33765881 |
tataacagagttgacagaaggttgatttggactaggattcgagggtgttgatgaagcttgtaatgttgaatgttgtagaagctgtaaaatctgattatac |
33765782 |
T |
|
| Q |
300 |
cgctcttgaatggtgttgatagtagctggagtgggattggtgtggctttccctttgtgggccattagaagcagtagc |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||||||||||| |
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| T |
33765781 |
tgctcttgaatggtgttgatagtagctggagtgggattggcgtggctttctcattgtggggcattagaagcagtagc |
33765705 |
T |
|
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