View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_14 (Length: 372)
Name: NF12033_low_14
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 29731859 - 29732188
Alignment:
| Q |
18 |
aatctttcatatagtagttttaacatattgatggatgcgcaaaggagaacaaaatgaagaacaagaccttgaaacaatccaaatcagacaactttctggt |
117 |
Q |
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| T |
29731859 |
aatctttcatatagtagttttaacatattgatggatgcgcaaaggagaacaaaatgaagaacaagaccttgaaacaatccaaatcagacaacattctggt |
29731958 |
T |
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| Q |
118 |
cgcgctatactttttacgagagtatcaaggtgatttttgttccgggtatagtcattatagaagttttggtgaggcaaaatgagacaaggaatgaagattg |
217 |
Q |
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| T |
29731959 |
cgcgctatactttttacaagagtatcaatgtgatttttt---cgggtatagtcattatagaagttttggtgaggcaaaatgagacaaggaatggagattg |
29732055 |
T |
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| Q |
218 |
tagtgagtcaacaattggaagaagcacgggtgtttaaatagtgtttaaacgtgagttcatgacaagttaaaaagtaagattttaatgcgttcaacaaata |
317 |
Q |
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| T |
29732056 |
tagtgagtcaacaattggaagaagcacgggtgtttaaatagtgtttaaacgtgagttcatgacaagttaaaaagtaagattttaatgggttcaacaaata |
29732155 |
T |
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| Q |
318 |
aacgagtcaatttatgtgtttcctcgttgtttg |
350 |
Q |
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| T |
29732156 |
aacgagtcaatgtatatgtttccccgttgtttg |
29732188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 31927461 - 31927540
Alignment:
| Q |
259 |
tgtttaaacgtgagttcatgacaagttaaaaagtaagattttaatgcgttcaacaaataaacgagtcaatttatgtgttt |
338 |
Q |
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| T |
31927461 |
tgtttaaacatgtattcttgacaaatcaaaaagtaagattttgatgtgttcaaccaagaaacgtgtcaatgtatgtgttt |
31927540 |
T |
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