View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_16 (Length: 349)
Name: NF12033_low_16
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 22 - 304
Target Start/End: Complemental strand, 9352807 - 9352526
Alignment:
| Q |
22 |
acacaagaaaattatattgtcaaaatataaaaaatgtccacaggaaaactccactcgtgcacaacacacgttcctaatctagatgcctactaatttgcac |
121 |
Q |
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| T |
9352807 |
acacaagaaaattctattgtcaaaataaaaaaaatgtccataggaaaactccactcgtgcaca-cacacgttcctaatctagatgcctactaatttgcac |
9352709 |
T |
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| Q |
122 |
atacacgtcacttcaattattgtacactttttctatattttaagaccttgaagttggaaaccaacttggttaaaaaatcagatgttttggcctgcagctc |
221 |
Q |
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| T |
9352708 |
atacacgtcacttcaattattgtacactttttctatattttcagaccttgaagatggaaaccaactttgttaaaaaatcagatgttttggcctgcagctc |
9352609 |
T |
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| Q |
222 |
cttcatattgagacaacctactgcacaaatctcagaactatgcagcaccagtttttataattgaaataatgagggtaatgtgg |
304 |
Q |
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| T |
9352608 |
cttcatattgagacaacctactgcacaaatctcagaactatgcagcaccagtttttataattgaaattatgagagttatgtgg |
9352526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 9306297 - 9306051
Alignment:
| Q |
13 |
atgaatagtacacaagaaaattatattgtcaaaatataaaaaa----tgtccacaggaaaactccactcgtgcacaacacacgttcctaatctagatgcc |
108 |
Q |
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| T |
9306297 |
atgaatagcacacaagcaagttctattgtcaaaataaaaaaaaataatgtccacagcaaaacttcactcgtgcaca-cacacgttccaaatctagaggcc |
9306199 |
T |
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| Q |
109 |
tactaatttgcacatacacgtcacttcaattattgtacactttttctatattttaagaccttgaagttggaaaccaacttggttaaaaaatcagatgttt |
208 |
Q |
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| T |
9306198 |
tactaatttgcacatacacgtaacttcaattattgtacactttt-ctatattttaagaccttgaagttggaaaccaactttgttaaaaaatcagatgttt |
9306100 |
T |
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| Q |
209 |
tggcctgcagctccttcatattgagacaacctactgcacaaatctcaga |
257 |
Q |
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| T |
9306099 |
tggcctgcagctccttcatattgagacaacctactgcacagatctcaga |
9306051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 193 - 304
Target Start/End: Complemental strand, 9332926 - 9332813
Alignment:
| Q |
193 |
aaaaaatcagatgttttggcctgcagctccttcatattgagacaacctactgcacaaatctc--agaactatgcagcaccagtttttataattgaaataa |
290 |
Q |
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| T |
9332926 |
aaaaaatcagatgttttggcctgcagctccttcatattgagacaacctactgcacaaatctcagagaaatatgcaccactaatttttataattgaaatga |
9332827 |
T |
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| Q |
291 |
tgagggtaatgtgg |
304 |
Q |
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| T |
9332826 |
tgagggtaatgtgg |
9332813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 304
Target Start/End: Complemental strand, 9302510 - 9302388
Alignment:
| Q |
182 |
ccaacttggttaaaaaatcagatgttttggcctgcagctccttcatattgagacaacctactgcacaaatctcagaactatgcagcaccagtttttataa |
281 |
Q |
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||||| ||| ||||||| |||||| | ||||||||||||||||||||||||||| ||||||||| |||||||||| | |||||||||| ||||||||| |
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| T |
9302510 |
ccaacgtggataaaaaaatagatgtggtagcctgcagctccttcatattgagacaatctactgcaccaatctcagaaatttgcagcaccaatttttataa |
9302411 |
T |
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| Q |
282 |
ttgaaataatgagggtaatgtgg |
304 |
Q |
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|||||| ||||||||||||||| |
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| T |
9302410 |
ttgaaacgatgagggtaatgtgg |
9302388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 117
Target Start/End: Complemental strand, 9302712 - 9302592
Alignment:
| Q |
4 |
aaaggaaacatgaatagtacacaagaaaattatattgtcaaaatataaaaaat--------gtccacaggaaaactccactcgtgcacaacacacgttcc |
95 |
Q |
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||||||||||||||||| |||||| ||||| ||||||||||||| ||||||| || ||||| |||| |||||||||||||| |||||||||| |
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| T |
9302712 |
aaaggaaacatgaatagcacacaaacaaattttattgtcaaaataaaaaaaataaaaaaatgtacacagaaaaattccactcgtgcaca-cacacgttcc |
9302614 |
T |
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| Q |
96 |
taatctagatgcctactaattt |
117 |
Q |
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|||| || |||||||||||||| |
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| T |
9302613 |
taatttaaatgcctactaattt |
9302592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 9305972 - 9305936
Alignment:
| Q |
297 |
taatgtggttttctaactgaaaacatgccagctatat |
333 |
Q |
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| T |
9305972 |
taatgaggttttctaactgaaaacatgccagctatat |
9305936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 9352497 - 9352461
Alignment:
| Q |
297 |
taatgtggttttctaactgaaaacatgccagctatat |
333 |
Q |
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| T |
9352497 |
taatgaggttttctaactgaaaacatgccagctatat |
9352461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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