View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12033_low_18 (Length: 338)

Name: NF12033_low_18
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12033_low_18
NF12033_low_18
[»] chr7 (22 HSPs)
chr7 (197-315)||(33941587-33941705)
chr7 (163-309)||(24658426-24658571)
chr7 (168-295)||(30074599-30074728)
chr7 (163-301)||(25232949-25233088)
chr7 (163-309)||(2945352-2945500)
chr7 (163-309)||(38300331-38300481)
chr7 (176-282)||(1691663-1691769)
chr7 (163-298)||(39785500-39785636)
chr7 (50-112)||(33941782-33941844)
chr7 (172-296)||(40716883-40717008)
chr7 (181-309)||(43265898-43266026)
chr7 (163-271)||(46090190-46090298)
chr7 (163-281)||(27080421-27080536)
chr7 (163-281)||(27197765-27197880)
chr7 (209-272)||(36906307-36906370)
chr7 (181-291)||(39780980-39781090)
chr7 (164-231)||(26824472-26824540)
chr7 (207-291)||(10512027-10512111)
chr7 (181-277)||(26787298-26787394)
chr7 (163-248)||(32221853-32221940)
chr7 (224-291)||(18114623-18114690)
chr7 (163-221)||(34346852-34346910)
[»] chr4 (11 HSPs)
chr4 (163-309)||(2158633-2158779)
chr4 (168-292)||(2813997-2814121)
chr4 (181-291)||(1112020-1112130)
chr4 (193-309)||(36247904-36248021)
chr4 (168-234)||(4377244-4377310)
chr4 (202-296)||(25023202-25023295)
chr4 (168-234)||(36247836-36247902)
chr4 (193-296)||(33518106-33518211)
chr4 (213-309)||(4377331-4377430)
chr4 (168-234)||(33518037-33518104)
chr4 (181-281)||(53840452-53840552)
[»] chr3 (24 HSPs)
chr3 (168-309)||(7856507-7856648)
chr3 (168-309)||(24309884-24310025)
chr3 (163-309)||(26285778-26285924)
chr3 (172-309)||(23778272-23778409)
chr3 (171-295)||(38572987-38573111)
chr3 (163-285)||(36475470-36475592)
chr3 (163-258)||(52308859-52308954)
chr3 (181-309)||(26903171-26903299)
chr3 (181-309)||(25070675-25070803)
chr3 (181-309)||(36617741-36617869)
chr3 (163-278)||(30136586-30136700)
chr3 (163-278)||(30142715-30142829)
chr3 (163-278)||(30146137-30146251)
chr3 (207-291)||(4137245-4137329)
chr3 (168-234)||(36478215-36478281)
chr3 (208-281)||(25735219-25735292)
chr3 (181-258)||(35502475-35502552)
chr3 (187-238)||(23794964-23795015)
chr3 (181-231)||(6714403-6714453)
chr3 (207-309)||(36477999-36478103)
chr3 (163-234)||(395926-395998)
chr3 (211-303)||(20397046-20397137)
chr3 (232-279)||(6714169-6714216)
chr3 (208-281)||(25203050-25203123)
[»] chr5 (16 HSPs)
chr5 (168-309)||(36744945-36745088)
chr5 (163-291)||(7607236-7607364)
chr5 (163-309)||(34751034-34751180)
chr5 (163-292)||(43144564-43144695)
chr5 (163-295)||(25819080-25819214)
chr5 (176-296)||(5069861-5069981)
chr5 (163-297)||(26459695-26459827)
chr5 (182-291)||(29669996-29670105)
chr5 (169-258)||(5569021-5569111)
chr5 (181-244)||(33824755-33824818)
chr5 (181-282)||(980134-980233)
chr5 (163-260)||(39509161-39509259)
chr5 (181-291)||(17076594-17076706)
chr5 (239-278)||(30078213-30078252)
chr5 (207-281)||(11079877-11079951)
chr5 (207-281)||(18475949-18476023)
[»] chr8 (20 HSPs)
chr8 (168-309)||(44873293-44873434)
chr8 (163-309)||(10381424-10381570)
chr8 (163-297)||(24556873-24557007)
chr8 (163-283)||(7681346-7681466)
chr8 (168-309)||(29866170-29866314)
chr8 (163-309)||(32161350-32161494)
chr8 (190-309)||(6802717-6802836)
chr8 (181-296)||(29841137-29841252)
chr8 (181-309)||(45486159-45486287)
chr8 (163-242)||(34696976-34697055)
chr8 (163-250)||(11993687-11993774)
chr8 (182-291)||(33235575-33235684)
chr8 (184-289)||(43421633-43421737)
chr8 (209-293)||(7388101-7388185)
chr8 (181-291)||(31235824-31235934)
chr8 (163-275)||(43421514-43421629)
chr8 (168-213)||(35990865-35990910)
chr8 (181-247)||(11463188-11463254)
chr8 (207-281)||(16863292-16863365)
chr8 (169-256)||(2148393-2148481)
[»] scaffold0002 (1 HSPs)
scaffold0002 (163-296)||(461297-461430)
[»] chr1 (7 HSPs)
chr1 (168-309)||(27464215-27464356)
chr1 (163-291)||(8064983-8065111)
chr1 (168-292)||(9539587-9539711)
chr1 (202-309)||(10781125-10781234)
chr1 (207-275)||(23353435-23353503)
chr1 (168-234)||(10781249-10781315)
chr1 (202-291)||(14230082-14230171)
[»] chr2 (10 HSPs)
chr2 (163-291)||(34190029-34190157)
chr2 (163-292)||(32032977-32033106)
chr2 (163-309)||(7700342-7700487)
chr2 (181-296)||(18703628-18703743)
chr2 (194-293)||(3357063-3357161)
chr2 (207-291)||(34878614-34878698)
chr2 (181-309)||(4075463-4075591)
chr2 (181-291)||(27447679-27447788)
chr2 (169-258)||(38417798-38417888)
chr2 (207-291)||(41009712-41009796)
[»] chr6 (12 HSPs)
chr6 (168-271)||(6689213-6689316)
chr6 (181-309)||(18816933-18817061)
chr6 (177-309)||(30705305-30705437)
chr6 (163-292)||(14607737-14607865)
chr6 (163-292)||(21883260-21883389)
chr6 (163-251)||(16461644-16461732)
chr6 (187-309)||(24901708-24901830)
chr6 (163-250)||(33704117-33704205)
chr6 (169-213)||(35188058-35188102)
chr6 (184-258)||(1975260-1975334)
chr6 (216-276)||(8150758-8150817)
chr6 (163-222)||(8150820-8150880)
[»] scaffold0311 (1 HSPs)
scaffold0311 (181-295)||(814-928)
[»] scaffold0684 (1 HSPs)
scaffold0684 (204-282)||(4149-4227)
[»] scaffold0163 (1 HSPs)
scaffold0163 (204-282)||(3891-3969)
[»] scaffold0535 (1 HSPs)
scaffold0535 (181-289)||(9694-9800)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 197 - 315
Target Start/End: Complemental strand, 33941705 - 33941587
Alignment:
Q  197 tctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcatttagccac 296  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33941705 tctcctatcaatttgttgaaaatgagttaaaataacatcattgctaattgttaaaagaacatttctttctatataagttacaagacggtcatttagccac 33941606  T
Q  297 cgattacccatttattaca 315  Q
     ||||||||||||||||||    
T  33941605 tgattacccatttattaca 33941587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 24658426 - 24658571
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||||||||||| ||||||||||||||||| || |||| ||||||||||||||||||||||| |||| |||| ||| |||||| ||||||| |||    
T  24658426 cattctttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaatgacatcattgctaa-tgttaatagaacatctct 24658524  T
Q  263 ttctatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||    
T  24658525 ttctatataagttacaagacggtcatttagccaccgatcatccattt 24658571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 30074728 - 30074599
Alignment:
Q  168 tttgatacaatacattacaatgaaaatc--gtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttc 265  Q
    ||||||||||||||||||||| ||||||  ||||| |||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||    
T  30074728 tttgatacaatacattacaatcaaaatctcgtctcctatccatttgttgaaaataagttaaaatgacatcattgttaattgttaaaagaacatctctttc 30074629  T
Q  266 tatataagttacaagacggtcatttagcca 295  Q
    |||||||||||||||| |||||||||||||    
T  30074628 tatataagttacaagatggtcatttagcca 30074599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 163 - 301
Target Start/End: Original strand, 25232949 - 25233088
Alignment:
Q  163 cattatttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttc 261  Q
    |||| |||||||||||| | ||||||||||||| ||||| |||| |||||||||||||||||||||||||||    || ||||| |||||||||||||||    
T  25232949 cattgtttgatacaatataattacaatgaaaattgtctcctatccatttgttgaaaatgagttaaaataacagcgctgctaatttttaaaagaacatttc 25233048  T
Q  262 tttctatataagttacaagacggtcatttagccaccgatt 301  Q
    ||| ||||||| |||||||||| |||||||||||| ||||    
T  25233049 tttttatataaattacaagacgatcatttagccactgatt 25233088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 163 - 309
Target Start/End: Complemental strand, 2945500 - 2945352
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatc--gtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacattt 260  Q
    |||| ||||||||||||||||||||| ||||||  ||||| |||| |||||||||||||||  |||||| |||| |||| ||||||||||||||| ||      
T  2945500 cattgtttgatacaatacattacaataaaaatctcgtctcctatctatttgttgaaaatgacctaaaatgacatcattgctaattgttaaaagaaaatca 2945401  T
Q  261 ctttctatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    ||||||||||||| ||||||||| ||||||| |||| ||| | ||||||    
T  2945400 ctttctatataagctacaagacgatcatttaaccactgatcatccattt 2945352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 163 - 309
Target Start/End: Complemental strand, 38300481 - 38300331
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||||||||||  |||||||||||||||||||| |||| |||||||||||||||| |||||| |||  |||| |||||||||| | ||||| | |    
T  38300481 cattgtttgatacaatgtattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgataattgttaataaaacatctat 38300382  T
Q  263 ttctatat----aagttacaagacggtcatttagccaccgattacccattt 309  Q
    ||||||||    |||||||||||||||||||||||||| ||| | ||||||    
T  38300381 ttctatataagtaagttacaagacggtcatttagccactgatcatccattt 38300331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 282
Target Start/End: Original strand, 1691663 - 1691769
Alignment:
Q  176 aatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagtt 275  Q
    |||| ||||||||| ||||| |||| |||| ||||||||||||||||||||||| | || ||||||||||||||| ||||||| ||||| ||||||||||    
T  1691663 aatatattacaatgtaaatcatctcctatccatttgttgaaaatgagttaaaatgatatcattgttaattgttaatagaacatctctttatatataagtt 1691762  T
Q  276 acaagac 282  Q
    |||||||    
T  1691763 acaagac 1691769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 163 - 298
Target Start/End: Original strand, 39785500 - 39785636
Alignment:
Q  163 cattatttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttc 261  Q
    |||| |||||| ||||||| ||||||||||||||||||  |||| ||||||| |||||||| ||||||||||  |||| ||||||||||||||||    |    
T  39785500 cattgtttgatgcaatacaattacaatgaaaatcgtctactatccatttgttaaaaatgagctaaaataacaacattgataattgttaaaagaacgcccc 39785599  T
Q  262 tttctatataagttacaagacggtcatttagccaccg 298  Q
    |||| ||| |||||||||||||||| |||| ||||||    
T  39785600 tttcgataaaagttacaagacggtcgtttaaccaccg 39785636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 33941844 - 33941782
Alignment:
Q  50 ggtggtgctgatgagtatggttgtggtgcaggggcggatccagactttaggtatatgtagagc 112  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  33941844 ggtggtgctgatgagtatggttgtggtgccggggcggatccagactttaggtatatgtggagc 33941782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 296
Target Start/End: Complemental strand, 40717008 - 40716883
Alignment:
Q  172 atacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatat 270  Q
    |||||||||| ||||||| ||||| ||||| |||| |||||||||||||||| |||||||||| |  |  ||| | |||||||||||||||||||| |||    
T  40717008 atacaatacaattacaataaaaattgtctcatatccatttgttgaaaatgaggtaaaataacagtggtactaacttttaaaagaacatttctttctgtat 40716909  T
Q  271 aagttacaagacggtcatttagccac 296  Q
    || |||||| || |||||||||||||    
T  40716908 aaattacaaaactgtcatttagccac 40716883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 43266026 - 43265898
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    ||||||||||||||| |||   ||| |||||||||||||||| || |||||||| | || ||||||| |||||||||| |||||||||| ||||||||||    
T  43266026 attacaatgaaaatcatctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttctataaaagttacaag 43265927  T
Q  281 acggtcatttagccaccgattacccattt 309  Q
     || ||||||| |||  ||| ||||||||    
T  43265926 ccgatcatttaaccattgatcacccattt 43265898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 163 - 271
Target Start/End: Complemental strand, 46090298 - 46090190
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||| ||| |||||||||||||||||||||||| |||  ||||||||||||||| ||||||| ||||  ||  |||||||||||||||| | |||    
T  46090298 cattgtttggtacgatacattacaatgaaaatcgtctcatattcatttgttgaaaatgaattaaaatgacatccttagtaattgttaaaagaacttctct 46090199  T
Q  263 ttctatata 271  Q
    |||||||||    
T  46090198 ttctatata 46090190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 281
Target Start/End: Original strand, 27080421 - 27080536
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||||||||||  ||||| | ||||||||| |||  |||||||||||||||| |||||| |||| || | |||||||||||||||||| |||    
T  27080421 cattgtttgatacaataca--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatcat-gctaattgttaaaagaacatatct 27080517  T
Q  263 ttctatataagttacaaga 281  Q
    || ||||||||||||||||    
T  27080518 ttttatataagttacaaga 27080536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 281
Target Start/End: Complemental strand, 27197880 - 27197765
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||||||||||  ||||| | ||||||||| |||  |||||||||||||||| |||||| |||| || | |||||||||||||||||| |||    
T  27197880 cattgtttgatacaataca--acaataacaatcgtctcctatttatttgttgaaaatgagctaaaatgacatcat-gctaattgttaaaagaacatatct 27197784  T
Q  263 ttctatataagttacaaga 281  Q
    || ||||||||||||||||    
T  27197783 ttttatataagttacaaga 27197765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 36906307 - 36906370
Alignment:
Q  209 ttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataa 272  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  36906307 ttgttgaaagtgagttaaaataacattattgttaattgtcaaaagaacatctctttctatataa 36906370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 39781090 - 39780980
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||||||||||||||   ||| |||||||||||||||| || |||||||| | || ||||||| |||||||||| |||||| ||| ||||||||||    
T  39781090 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 39780991  T
Q  281 acggtcattta 291  Q
     || |||||||    
T  39780990 ccgatcattta 39780980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 26824540 - 26824472
Alignment:
Q  164 attatttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataa 231  Q
    |||||||||| ||||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  26824540 attatttgatgcaatacaattacaatgaaaatcgtctcctatcgatttgttgaaaatgaggtaaaataa 26824472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 10512111 - 10512027
Alignment:
Q  207 atttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcattta 291  Q
    |||||||||||||||| ||||||||||  |||| |||||| |  |||||||| |||||||||| ||||||||  |||||||||||    
T  10512111 atttgttgaaaatgagctaaaataacaccattgctaattggttcaagaacatctctttctataaaagttacacaacggtcattta 10512027  T

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Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 277
Target Start/End: Original strand, 26787298 - 26787394
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttac 277  Q
    |||||||| ||||| || ||||||  |||||||||||| ||| |||||||| |  || | ||||| ||||||||| ||||| |||||||||||||||    
T  26787298 attacaatcaaaattgtgtcttattcatttgttgaaaacgagataaaataatagcatcgctaatttttaaaagaatatttcattctatataagttac 26787394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 248
Target Start/End: Complemental strand, 32221940 - 32221853
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatc--gtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgtt 248  Q
    |||| |||| ||||||| |||||| ||| ||||  ||||| |||| ||||||||||||||||||||||| |||| |||| ||| ||||    
T  32221940 cattgtttggtacaataaattacattgagaatctcgtctcctatccatttgttgaaaatgagttaaaatgacatcattgctaaatgtt 32221853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 18114690 - 18114623
Alignment:
Q  224 taaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcattta 291  Q
    |||||| |||| |||  ||||||||  |||||||||||||||||||||  |||||||||| |||||||    
T  18114690 taaaattacatcattaataattgttctaagaacatttctttctatatacattacaagacgatcattta 18114623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 34346910 - 34346852
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatga 221  Q
    |||| ||| ||||||||||||| | ||||||||||||| |||| |||||| ||||||||    
T  34346910 cattgttttatacaatacattaaagtgaaaatcgtctcatatccatttgtggaaaatga 34346852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 2158633 - 2158779
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| || |||| ||||||||||||||| || |||    
T  2158633 cattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaataatatcattgctaattgttaaaagaagatctct 2158732  T
Q  263 ttctatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    ||||||||| ||||||||||||||||||||||| | || ||||||||    
T  2158733 ttctatataggttacaagacggtcatttagccatcaatcacccattt 2158779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 168 - 292
Target Start/End: Original strand, 2813997 - 2814121
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttcta 267  Q
    ||||||||||||||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||| |||| | |||||||||| | ||| | ||||||    
T  2813997 tttgatacaatacattacaatgaaagtcgtctcatatccatttgttgaaaatgagctaaaataacatcattgcttattgttaaaacatcatatatttcta 2814096  T
Q  268 tataagttacaagacggtcatttag 292  Q
    || ||||||||| ||||||||||||    
T  2814097 tacaagttacaatacggtcatttag 2814121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 291
Target Start/End: Original strand, 1112020 - 1112130
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||| ||||| |||||||||| |||||||||||||||  ||||||||| |  |||||||||||||||||||||| | |||||||||||||||||||    
T  1112020 attacaatcaaaattgtctcttatccatttgttgaaaatgatctaaaataacctcgttgttaattgttaaaagaacatgtatttctatataagttacaag 1112119  T
Q  281 acggtcattta 291  Q
    ||  |||||||    
T  1112120 acaatcattta 1112130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 193 - 309
Target Start/End: Original strand, 36247904 - 36248021
Alignment:
Q  193 atcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctata--taagttacaagacggtcattt 290  Q
    ||||||| ||||| ||||||||||| |||| |||||| |||| ||||||||||||||||||||||| ||||||||||  |||||||||| ||||||||||    
T  36247904 atcgtcttttatccatttgttgaaa-tgagctaaaatgacatcattgttaattgttaaaagaacatatctttctatatgtaagttacaaaacggtcattt 36248002  T
Q  291 agccaccgattacccattt 309  Q
    |||||| ||| | ||||||    
T  36248003 agccactgatcatccattt 36248021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 4377244 - 4377310
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacat 234  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||| ||||    
T  4377244 tttgatacaatacattacaatgaaaatcgtcttatatccatttgttgaaaatgagttaaaatgacat 4377310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 202 - 296
Target Start/End: Complemental strand, 25023295 - 25023202
Alignment:
Q  202 tatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcatttagccac 296  Q
    |||| ||||||| |||||| | |||||||| || |||| |||||||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  25023295 tatctatttgtttaaaatgcgctaaaataa-atcattgctaattgttaaaagaacatctatttctatataagttacaagacggttatttagccac 25023202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 36247836 - 36247902
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacat 234  Q
    ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| ||||    
T  36247836 tttgatacaatacattacaatgaaaatcgtctcatatccatttgttgaaaatgagctaaaatgacat 36247902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 193 - 296
Target Start/End: Original strand, 33518106 - 33518211
Alignment:
Q  193 atcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttc--tatataagttacaagacggtcattt 290  Q
    |||||||  |||| || ||||||||||||| |||||| |||| |||| |||||||||||||||||| | ||||  |||||||||||||||||| ||| ||    
T  33518106 atcgtcttctatccatctgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctatttctatatataagttacaagacgatcactt 33518205  T
Q  291 agccac 296  Q
    ||||||    
T  33518206 agccac 33518211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 4377331 - 4377430
Alignment:
Q  213 tgaaaatgagttaaaataacattattgttaattgttaaaagaacat-ttctttctata--taagttacaagacggtcatttagccaccgattacccattt 309  Q
    |||||||||| |||||| |||| |||| |||||||| ||||||||| || ||||||||  |||||||||||||| |||||||||||| ||| ||||||||    
T  4377331 tgaaaatgagctaaaatgacatcattgctaattgtttaaagaacatcttttttctatatataagttacaagacgatcatttagccactgatcacccattt 4377430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 33518037 - 33518104
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttg-aaaatgagttaaaataacat 234  Q
    ||||||||||||||||||||||||||||||||  |||| |||||| | |||||||| |||||| ||||    
T  33518037 tttgatacaatacattacaatgaaaatcgtcttatatccatttgtcgaaaaatgagctaaaatgacat 33518104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 53840552 - 53840452
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    ||||||| ||||||  ||| || || |||||||||||||||  |||||| | || |||  ||||||||  |||||||| ||||| |||||| ||||||||    
T  53840552 attacaaagaaaataatctattttctatttgttgaaaatgaactaaaattatatcattactaattgttttaagaacatctctttatatataggttacaag 53840453  T
Q  281 a 281  Q
    |    
T  53840452 a 53840452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 7856507 - 7856648
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttcta 267  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||||||| |||||||| |||||| || | ||||||||||||||||||||||| ||||||||    
T  7856507 tttgatacaatacattataataaaaatcgtctcctatccatttgttaaaaatgagctaaaatgacgtcattgttaattgttaaaagaacatctctttcta 7856606  T
Q  268 tataagttacaagacggtcatttagccaccgattacccattt 309  Q
    ||||||||||||||| ||||||||||||| ||| ||||||||    
T  7856607 tataagttacaagacagtcatttagccactgatcacccattt 7856648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 24309884 - 24310025
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttcta 267  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| ||||| |||| ||||||||||||||||||||||| ||||||||    
T  24309884 tttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaataagtcaaaatcacatcattgttaattgttaaaagaacatctctttcta 24309983  T
Q  268 tataagttacaagacggtcatttagccaccgattacccattt 309  Q
    | |||||||||||||  ||||||| |||||||| | ||||||    
T  24309984 tgtaagttacaagacattcatttaaccaccgatcatccattt 24310025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 163 - 309
Target Start/End: Complemental strand, 26285924 - 26285778
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||  |||| |||| |||||||||||||||||| |||    
T  26285924 cattgtttgatacaatacattacaatgaaaatcgtttcctatccatttgttgaaaatgagttaaaaggacatcattgctaattgttaaaagaacatatct 26285825  T
Q  263 ttctatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    ||||| ||| |||||||||| |||||||||||||  || ||||||||    
T  26285824 ttctacatatgttacaagacagtcatttagccactaatcacccattt 26285778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 172 - 309
Target Start/End: Original strand, 23778272 - 23778409
Alignment:
Q  172 atacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatata 271  Q
    ||||| ||||||||||| ||||| |||||||||| |||||||||||||||| |||||| |||| |||| |||||||||||||||||| ||||||||||||    
T  23778272 atacattacattacaataaaaatggtctcttatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttctatata 23778371  T
Q  272 agttacaagacggtcatttagccaccgattacccattt 309  Q
    ||| |||| ||||| |||||| ||| ||| ||||||||    
T  23778372 agtaacaaaacggttatttagtcactgatcacccattt 23778409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 171 - 295
Target Start/End: Original strand, 38572987 - 38573111
Alignment:
Q  171 gatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatat 270  Q
    |||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||| |||  |||| |||||||||| ||||||| |||||||||||    
T  38572987 gatacaatgcattacaatgaaaatcgtctcctatccatttgttgaaaatgagctaaaatgacagcattgctaattgttaatagaacatctctttctatat 38573086  T
Q  271 aagttacaagacggtcatttagcca 295  Q
    |||||||| |||| |||||||||||    
T  38573087 aagttacacgacgatcatttagcca 38573111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 163 - 285
Target Start/End: Original strand, 36475470 - 36475592
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||||||||||||| ||||||||||||||||||  ||  ||||||| ||||||||  ||||| |||| |||| |||||||||||||||||| |||    
T  36475470 cattgtttgatacaatacactacaatgaaaatcgtctcccattcatttgttaaaaatgagcgaaaatgacatcattgctaattgttaaaagaacatctct 36475569  T
Q  263 ttctatataagttacaagacggt 285  Q
    || ||||||||||||||||||||    
T  36475570 ttttatataagttacaagacggt 36475592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 52308954 - 52308859
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacat 258  Q
    |||| ||||||||| |||||||||||||||||| |||| |||| |||||||||||||||| |||||| |||| ||||||||||||||| |||||||    
T  52308954 cattgtttgatacactacattacaatgaaaatcatctcctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacat 52308859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 26903171 - 26903299
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    ||||||||||||||||||| | ||| |||||||||||||||| || |||||||| | || ||||||| |||||||||| |||||| ||| ||||||||||    
T  26903171 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 26903270  T
Q  281 acggtcatttagccaccgattacccattt 309  Q
     || ||||||| |||  ||| ||||||||    
T  26903271 ccgatcatttaaccattgatcacccattt 26903299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 25070803 - 25070675
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||||||||||||||   ||| |||||||||||||||| || |||||||| | || ||||||| |||||||||| |||||| ||| ||||||||||    
T  25070803 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 25070704  T
Q  281 acggtcatttagccaccgattacccattt 309  Q
     || ||||||| |||  ||| ||||||||    
T  25070703 ccgatcatttaaccattgatcacccattt 25070675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 36617869 - 36617741
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||||||||||||||   ||| |||||||||||||||| || |||||||| | || ||||||| |||||||||| |||||| ||| ||||||||||    
T  36617869 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 36617770  T
Q  281 acggtcatttagccaccgattacccattt 309  Q
     || ||||||| |||  ||| ||||||||    
T  36617769 ccgatcatttaaccattgatcacccattt 36617741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 30136586 - 30136700
Alignment:
Q  163 cattatttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttc 261  Q
    |||| |||||||||||||| || |||||||||| ||||| |||| |||||||||||||| |  ||||||||      | ||||| |||||||||||||||    
T  30136586 cattgtttgatacaatacaatttcaatgaaaatggtctcctatccatttgttgaaaatgcg--aaaataacggcgccgctaatttttaaaagaacatttc 30136683  T
Q  262 tttctatataagttaca 278  Q
    |||||||||||||||||    
T  30136684 tttctatataagttaca 30136700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 30142715 - 30142829
Alignment:
Q  163 cattatttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttc 261  Q
    |||| |||||||||||||| || |||||||||| ||||| |||| |||||||||||||| |  ||||||||      | ||||| |||||||||||||||    
T  30142715 cattgtttgatacaatacaatttcaatgaaaatggtctcctatccatttgttgaaaatgcg--aaaataacggcgccgctaatttttaaaagaacatttc 30142812  T
Q  262 tttctatataagttaca 278  Q
    |||||||||||||||||    
T  30142813 tttctatataagttaca 30142829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 163 - 278
Target Start/End: Original strand, 30146137 - 30146251
Alignment:
Q  163 cattatttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttc 261  Q
    |||| |||||||||||||| || |||||||||| ||||| |||| |||||||||||||| |  ||||||||      | ||||| |||||||||||||||    
T  30146137 cattgtttgatacaatacaatttcaatgaaaatggtctcctatccatttgttgaaaatgcg--aaaataacggcgccgctaatttttaaaagaacatttc 30146234  T
Q  262 tttctatataagttaca 278  Q
    |||||||||||||||||    
T  30146235 tttctatataagttaca 30146251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 4137329 - 4137245
Alignment:
Q  207 atttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcattta 291  Q
    ||||||||||||||||||||||| ||||  ||  ||||||||  |||||||| |||| ||||||| ||||||||||| |||||||    
T  4137329 atttgttgaaaatgagttaaaatgacatcgttactaattgttctaagaacatctcttactatatatgttacaagacgatcattta 4137245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 36478281 - 36478215
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacat 234  Q
    ||||||||||||| ||||||| ||||| |||| | ||| ||||||||||||||||||||||| ||||    
T  36478281 tttgatacaatacgttacaattaaaattgtctttgatccatttgttgaaaatgagttaaaatgacat 36478215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 25735219 - 25735292
Alignment:
Q  208 tttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaaga 281  Q
    |||||||||||||| ||||||| | || |||  ||||| || ||||||||| ||||||||||||||||||||||    
T  25735219 tttgttgaaaatgaattaaaattatatcattactaattattcaaagaacatctctttctatataagttacaaga 25735292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 258
Target Start/End: Complemental strand, 35502552 - 35502475
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacat 258  Q
    |||||||| ||| | ||||| |||| ||||||| |||||||||||||||||||  |||| ||||| ||||||||||||    
T  35502552 attacaattaaatttgtctcgtatccatttgttaaaaatgagttaaaataacagcattgctaatttttaaaagaacat 35502475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 238
Target Start/End: Original strand, 23794964 - 23795015
Alignment:
Q  187 atgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattatt 238  Q
    ||||||||||||||||||| |||||||||||||||| |||||  ||||||||    
T  23794964 atgaaaatcgtctcttatccatttgttgaaaatgagctaaaaagacattatt 23795015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 6714453 - 6714403
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataa 231  Q
    |||||||||||||| ||||| |||| ||||||||||||||| |||||||||    
T  6714453 attacaatgaaaattgtctcatatctatttgttgaaaatgaattaaaataa 6714403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 207 - 309
Target Start/End: Complemental strand, 36478103 - 36477999
Alignment:
Q  207 atttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttc--tatataagttacaagacggtcatttagccaccgattacc 304  Q
    |||| ||||||||||| |||||| |||| |||  |||||||||||||||||| | ||||  |||||||||||||| |||  ||||||| ||| ||| | |    
T  36478103 atttcttgaaaatgagctaaaatgacatcattactaattgttaaaagaacatctttttctatatataagttacaaaacgaacatttagtcactgatcatc 36478004  T
Q  305 cattt 309  Q
    |||||    
T  36478003 cattt 36477999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 395998 - 395926
Alignment:
Q  163 cattatttgatacaatacatt-acaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacat 234  Q
    |||| |||||||||||||||| || |||||||| ||||   ||| |||||||||||||||| |||||||||||    
T  395998 cattgtttgatacaatacatttacgatgaaaattgtctaccatccatttgttgaaaatgagctaaaataacat 395926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 303
Target Start/End: Original strand, 20397046 - 20397137
Alignment:
Q  211 gttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcatttagccaccgattac 303  Q
    ||||||||||| |||||||||||| | | ||| || || |  ||||||||||||||||| ||||||||  ||||||||||| |||| ||||||    
T  20397046 gttgaaaatgatttaaaataacatcaatattatttttttat-gaacatttctttctataaaagttacagtacggtcatttaaccactgattac 20397137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 279
Target Start/End: Complemental strand, 6714216 - 6714169
Alignment:
Q  232 cattattgttaattgttaaaagaacatttctttctatataagttacaa 279  Q
    |||||||| ||||||||||||||| || |||||||||| |||||||||    
T  6714216 cattattgctaattgttaaaagaatatctctttctataaaagttacaa 6714169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 25203123 - 25203050
Alignment:
Q  208 tttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaaga 281  Q
    ||||||||||||||  |||||| | || |||  ||||| ||  |||||||| ||||||||||||||||||||||    
T  25203123 tttgttgaaaatgaactaaaattatatcattactaattattctaagaacatctctttctatataagttacaaga 25203050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 36744945 - 36745088
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttc-- 265  Q
    |||||||||||| |||||||| ||||||||||  |||| |||||||||||||||| |||||| |||| |||| |||||||||||||||||| ||||||      
T  36744945 tttgatacaataaattacaattaaaatcgtcttatatccatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaacatctctttcta 36745044  T
Q  266 tatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  36745045 tatataagttacaagacggtcatttagccaccgatcacccattt 36745088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 163 - 291
Target Start/End: Complemental strand, 7607364 - 7607236
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||||||||||||||||| ||||||||||  |||| |||||||||||||||| |||||| |||| ||||||||||||||| ||||||| |||    
T  7607364 cattgtttgatacaatacattacaataaaaatcgtcttctatccatttgttgaaaatgagctaaaatgacatcattgttaattgttaatagaacatctct 7607265  T
Q  263 ttctatataagttacaagacggtcattta 291  Q
    ||||||||||||||||||||  |||||||    
T  7607264 ttctatataagttacaagacactcattta 7607236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 309
Target Start/End: Complemental strand, 34751180 - 34751034
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||||||||||||| |||||||||| |||| | || |||||||||||||||| |||||| |||| |||| ||||||||||||  |||| |||    
T  34751180 cattgtttgatacaatacattaaaatgaaaatcatctcgtgtctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaattacatctct 34751081  T
Q  263 ttctatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    || |||||||||||||| ||||| |||||||||||||| | ||||||    
T  34751080 ttatatataagttacaaaacggttatttagccaccgatcatccattt 34751034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 43144564 - 43144695
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaat--cgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacattt 260  Q
    |||| |||||||||||||||||||||||||||  | ||||  ||| |||||||||||||||| |||| | ||||  |||||||||||||||||||||| |    
T  43144564 cattgtttgatacaatacattacaatgaaaatttcttctccaatccatttgttgaaaatgagctaaagtgacatctttgttaattgttaaaagaacatct 43144663  T
Q  261 ctttctatataagttacaagacggtcatttag 292  Q
     |||||||||| |||||||||| |||||||||    
T  43144664 ttttctatatatgttacaagacagtcatttag 43144695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 163 - 295
Target Start/End: Original strand, 25819080 - 25819214
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttc- 261  Q
    |||| ||||| |||||||||||| |||||||| ||||| |||| ||||||||||||| || ||||||||| |||||  |||  ||||||||||||| ||     
T  25819080 cattgtttgaaacaatacattacgatgaaaattgtctcctatccatttgttgaaaataagctaaaataactttattactaacagttaaaagaacatatct 25819179  T
Q  262 -tttctatataagttacaagacggtcatttagcca 295  Q
     |||||| |||||||||||||||||||||||||||    
T  25819180 atttctacataagttacaagacggtcatttagcca 25819214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 176 - 296
Target Start/End: Original strand, 5069861 - 5069981
Alignment:
Q  176 aatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagtt 275  Q
    ||||| |||||||||||||| |||| | || ||||||||||||||||||||||| | || ||||||||||||||||| ||||| ||||| |||||| |||    
T  5069861 aatacgttacaatgaaaatcatctcatgtctatttgttgaaaatgagttaaaatgatatcattgttaattgttaaaataacatctctttatatataggtt 5069960  T
Q  276 acaagacggtcatttagccac 296  Q
    |||| || ||| |||||||||    
T  5069961 acaaaacagtcgtttagccac 5069981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 297
Target Start/End: Original strand, 26459695 - 26459827
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||||||||||||||||||||||||||||| || |||| |||||||||||||||| |||||| | |    |  ||||||||||| ||| || |||    
T  26459695 cattgtttgatacaatacattacaatgaaaatcgtgtcctatccatttgttgaaaatgagctaaaatgaga--gctactaattgttaaaggaatatctct 26459792  T
Q  263 ttctatataagttacaagacggtcatttagccacc 297  Q
    || ||||||||||||||||| ||||||||||||||    
T  26459793 ttatatataagttacaagacagtcatttagccacc 26459827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 29669996 - 29670105
Alignment:
Q  182 ttacaatgaaaatcgtct-cttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    ||||||||||||| |||| || |||| |||||||||||| || |||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||    
T  29669996 ttacaatgaaaattgtcttctaatca-tttgttgaaaataagctaaaataacattattgataattgttaaaagaacatctttttctatataagttagaag 29670094  T
Q  281 acggtcattta 291  Q
    | | |||||||    
T  29670095 atgatcattta 29670105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 5569021 - 5569111
Alignment:
Q  169 ttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacat 258  Q
    ||||| ||||||| ||||||||||||| ||||| |||| |||||||||||||||||||||||||||  |||| ||||| ||||||||||||    
T  5569021 ttgatgcaatacaattacaatgaaaattgtctcgtatccatttgttgaaaatgagttaaaataacaacattgctaatttttaaaagaacat 5569111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 244
Target Start/End: Complemental strand, 33824818 - 33824755
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaat 244  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||||| |||| ||||    
T  33824818 attacaatgaaaatcgtctcctattcatttgttgaaaatgagttaaaataacatcattgctaat 33824755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 282
Target Start/End: Complemental strand, 980233 - 980134
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||| |||||| ||| ||||| ||||||||||||||   ||||||||||| |||||||| | ||||||||| |||  ||||| |||||||||||||    
T  980233 attacaataaaaatcatctattatctatttgttgaaaatgtactaaaataacatcattgttaactattaaaagaatatt--tttctctataagttacaag 980136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 260
Target Start/End: Original strand, 39509161 - 39509259
Alignment:
Q  163 cattatttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacattt 260  Q
    |||| |||||||||||||| ||||||||||||| ||||   |||||||||||||||||||  | |||||||| | ||| | ||| ||||||||||||||    
T  39509161 cattgtttgatacaatacaattacaatgaaaattgtcttccatcaatttgttgaaaatgaactgaaataacaatgttgctgatttttaaaagaacattt 39509259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 17076706 - 17076594
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaa--catttctttctatataagttaca 278  Q
    |||||||||||||||||||   ||  |||||||||||||||| || |||||||| | || ||||||| |||| ||  ||| |||||| ||||||||||||    
T  17076706 attacaatgaaaatcgtctaccattcatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaaaaaaacatctctttcaatataagttaca 17076607  T
Q  279 agacggtcattta 291  Q
    || || |||||||    
T  17076606 agtcgatcattta 17076594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 30078252 - 30078213
Alignment:
Q  239 gttaattgttaaaagaacatttctttctatataagttaca 278  Q
    |||||||| |||||||||| ||||||||||||||||||||    
T  30078252 gttaattgctaaaagaacaattctttctatataagttaca 30078213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 11079951 - 11079877
Alignment:
Q  207 atttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaaga 281  Q
    |||||||||||||||  |||||| | || ||| |||||||||  |||||||| ||||| |||||| |||||||||    
T  11079951 atttgttgaaaatgaaataaaatcatatcattattaattgttctaagaacatctctttttatataggttacaaga 11079877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Complemental strand, 18476023 - 18475949
Alignment:
Q  207 atttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaaga 281  Q
    |||||||||||||||  |||||| | || |||  ||||||||  |||||||| |||||||||||| |||||||||    
T  18476023 atttgttgaaaatgaactaaaattatataattactaattgttctaagaacatctctttctatataggttacaaga 18475949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 44873293 - 44873434
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttcta 267  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| | ||||||    
T  44873293 tttgatacaatacattacaatgaaaatcgtcttctatccatttgttgaaaatgagttaaaataacatgattgctaattgttaaaagaacatctttttcta 44873392  T
Q  268 tataagttacaagacggtcatttagccaccgattacccattt 309  Q
    |  ||||||||||| ||| ||||| ||||  || ||||||||    
T  44873393 tgcaagttacaagatggttatttaaccactaatcacccattt 44873434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 10381424 - 10381570
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||| ||||||||||||| ||||| |||||||||| |||||||||||||||  |||||| |||| ||||||||||||||||| ||||| | |    
T  10381424 cattgtttgatataatacattacaatcaaaattgtctcttatctatttgttgaaaatgaactaaaatgacatcattgttaattgttaaaataacatctgt 10381523  T
Q  263 ttctatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    || |||||||||||||| || ||| ||||||||| ||| ||||||||    
T  10381524 ttatatataagttacaaaacagtcgtttagccactgatcacccattt 10381570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 297
Target Start/End: Complemental strand, 24557007 - 24556873
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||||||||||||||||||||||||||||  |  |||| |||||||||||||||  |||| |  |||||||| ||||||||||||||| | || |    
T  24557007 cattgtttgatacaatacattacaatgaaaatcgatttctatccatttgttgaaaatgaagtaaattgtcattattgctaattgttaaaagaaaactttt 24556908  T
Q  263 ttctatataagttacaagacggtcatttagccacc 297  Q
    || ||||||||||||||||||||||||||||||||    
T  24556907 ttatatataagttacaagacggtcatttagccacc 24556873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 163 - 283
Target Start/End: Complemental strand, 7681466 - 7681346
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||||||||||| ||||||||||||||||| || |||| ||||||||||||||   |||||| |||| |||| |||||||||||||||||| |||    
T  7681466 cattgtttgatacaatatattacaatgaaaatcgtttcctatccatttgttgaaaatgttctaaaatgacatcattgctaattgttaaaagaacatatct 7681367  T
Q  263 ttctatataagttacaagacg 283  Q
    |||||||||||||| ||||||    
T  7681366 ttctatataagttataagacg 7681346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 309
Target Start/End: Original strand, 29866170 - 29866314
Alignment:
Q  168 tttgatacaatacattacaatgaaaat--cgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacat-ttcttt 264  Q
    |||||||||||||||||||||||||||  | ||||  ||| |||||||||||||||| |||||| |||| ||| |||||| |||||||||||| || |||    
T  29866170 tttgatacaatacattacaatgaaaatttcatctccgatccatttgttgaaaatgagctaaaatgacatcattattaatttttaaaagaacatctttttt 29866269  T
Q  265 ctatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    || |||| |||||||||||||||||||||||  ||| ||||||||    
T  29866270 ctgtatatgttacaagacggtcatttagccattgatcacccattt 29866314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 309
Target Start/End: Complemental strand, 32161494 - 32161350
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||||||||||||| ||  ||||||||||| ||||  ||||||||||||||| ||||||||||| | |  ||| |||||||||||||| |||    
T  32161494 cattgtttgatacaatacattataactaaaatcgtctcatatc--tttgttgaaaatgagataaaataacatcaatactaaatgttaaaagaacatctct 32161397  T
Q  263 ttctatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    || |||| |||||||||||| ||||||||| |||  || ||||||||    
T  32161396 ttttatacaagttacaagacagtcatttagtcactaataacccattt 32161350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 190 - 309
Target Start/End: Complemental strand, 6802836 - 6802717
Alignment:
Q  190 aaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcatt 289  Q
    ||||| ||||| |||  ||||||| |||||||  |||||| || | |||| |||||||||||| ||||| ||||| ||||||||||||||||||| ||||    
T  6802836 aaaattgtctcctattcatttgttaaaaatgaagtaaaatgacttcattgctaattgttaaaataacatctctttttatataagttacaagacggacatt 6802737  T
Q  290 tagccaccgattacccattt 309  Q
    ||||||||||| ||||||||    
T  6802736 tagccaccgatcacccattt 6802717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 29841252 - 29841137
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||| ||||||||| ||||| |||| |||||||||||||| ||||||||||||    || ||||| |||||||||||| |||||||||||||||||||||    
T  29841252 attataatgaaaattgtctcatatctatttgttgaaaatgggttaaaataacaacggtgctaatttttaaaagaacatatctttctatataagttacaag 29841153  T
Q  281 acggtcatttagccac 296  Q
    ||  ||||||| ||||    
T  29841152 acactcatttaaccac 29841137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 45486287 - 45486159
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||||||||||||||   ||| |||||||||||||||| || |||||||| | || ||||||| |||||||||| |||||| ||| ||||||||||    
T  45486287 attacaatgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 45486188  T
Q  281 acggtcatttagccaccgattacccattt 309  Q
     || ||||||| |||  ||| ||||||||    
T  45486187 ccgatcatttaaccattgatcacccattt 45486159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 34697055 - 34696976
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgtta 242  Q
    |||| |||||||||||| |||||||||||||||||||| |||| |||||||||||||||| |||||| ||||| ||||||    
T  34697055 cattgtttgatacaatatattacaatgaaaatcgtctcatatccatttgttgaaaatgagataaaatgacatttttgtta 34696976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 11993774 - 11993687
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaa 250  Q
    |||| ||||||||| ||||||||||||||| || |||| |||  |||||||||||||||| |||||| |||| |||||||||||||||    
T  11993774 cattgtttgatacactacattacaatgaaagtcatctcctatacatttgttgaaaatgagctaaaatgacatcattgttaattgttaa 11993687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 291
Target Start/End: Original strand, 33235575 - 33235684
Alignment:
Q  182 ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaaga 281  Q
    |||||||||||||| ||| | ||| |||||||||||||||| ||||||||||  |||| |||||| |  || ||||| |||||||||| |||||||| ||    
T  33235575 ttacaatgaaaatcatctatcatccatttgttgaaaatgagctaaaataacaccattgctaattggttcaaaaacatctctttctataaaagttacacga 33235674  T
Q  282 cggtcattta 291  Q
    || |||||||    
T  33235675 cgttcattta 33235684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 289
Target Start/End: Original strand, 43421633 - 43421737
Alignment:
Q  184 acaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacg 283  Q
    ||||| ||||||||||| |||| ||||||| |||||||  |||||| ||| ||||  | ||||||||||||| ||| |||| ||||||||||||||||||    
T  43421633 acaattaaaatcgtctcctatccatttgtt-aaaatgaactaaaatgacaatattactgattgttaaaagaatattactttttatataagttacaagacg 43421731  T
Q  284 gtcatt 289  Q
    ||||||    
T  43421732 gtcatt 43421737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 293
Target Start/End: Complemental strand, 7388185 - 7388101
Alignment:
Q  209 ttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcatttagc 293  Q
    |||||||||| | | |||||||| |  |||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||    
T  7388185 ttgttgaaaacgtgctaaaataaaaacattgctaatttttaaaaaaacatttatttctatataagttacaagacggtcatttagc 7388101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 31235934 - 31235824
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    ||||||| ||||||  ||| || || |||||||||||||||| |||||| |||| |||  ||||||||  |||||||| ||| ||||| || ||||||||    
T  31235934 attacaaagaaaatgctctattttccatttgttgaaaatgagctaaaattacatcattactaattgtttcaagaacatctctctctatgtacgttacaag 31235835  T
Q  281 acggtcattta 291  Q
    ||| |||||||    
T  31235834 acgatcattta 31235824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 275
Target Start/End: Original strand, 43421514 - 43421629
Alignment:
Q  163 cattatttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaat---aacattattgttaattgttaaaagaacat 258  Q
    |||| |||||| ||||||| ||||||| ||||||||||  |||| |||||||||||||||  ||||||   ||||||| |  ||||||||||||||||||    
T  43421514 cattgtttgatgcaatacaattacaataaaaatcgtcttctatctatttgttgaaaatgaactaaaattacaacattact-ctaattgttaaaagaacat 43421612  T
Q  259 ttctttctatataagtt 275  Q
    | |||  ||||||||||    
T  43421613 tacttcttatataagtt 43421629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 35990910 - 35990865
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgtt 213  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||||    
T  35990910 tttgatacaatacataacaatgaaaatcgtctcctatctatttgtt 35990865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 11463188 - 11463254
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgt 247  Q
    |||||||||||||||||||   ||| |||||||||||||||| || |||||||| | || |||||||    
T  11463188 attacaatgaaaatcgtctaccatccatttgttgaaaatgagctagaataacatcagtgctaattgt 11463254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 16863292 - 16863365
Alignment:
Q  207 atttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaaga 281  Q
    ||||||||||||||| ||||||| |||| |||| ||||||||  || || || |||||||||||| |||||||||    
T  16863292 atttgttgaaaatgaattaaaattacatcattgctaattgttccaataa-atatctttctatatatgttacaaga 16863365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 256
Target Start/End: Original strand, 2148393 - 2148481
Alignment:
Q  169 ttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaac 256  Q
    ||||| ||||||| |||||||||||||  ||| ||||  |||||||||||| ||  ||||||| ||| |||| ||||| ||||||||||    
T  2148393 ttgatgcaatacaattacaatgaaaataatctattatacatttgttgaaaacgaactaaaatagcatcattgctaatttttaaaagaac 2148481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 163 - 296
Target Start/End: Complemental strand, 461430 - 461297
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||| |||||||||||||||||||||||||||| |||| |||||||||||||||| |||||| |||| |||| |||||||||||| ||||| |||    
T  461430 cattgtttggtacaatacattacaatgaaaatcgtctcctatctatttgttgaaaatgagctaaaatgacatcattgctaattgttaaaataacatatct 461331  T
Q  263 ttctatataagttacaagacggtcatttagccac 296  Q
    || |||||||||||||| |||||| |||| ||||    
T  461330 ttatatataagttacaaaacggtcgtttaaccac 461297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 168 - 309
Target Start/End: Complemental strand, 27464356 - 27464215
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttcta 267  Q
    ||||||||||||||| ||||| |||| ||||| ||||| |||||||||||||||  |||||| || | |||||||||||||||||||| || | ||||||    
T  27464356 tttgatacaatacatcacaattaaaaccgtctattatctatttgttgaaaatgaactaaaatgacgtcattgttaattgttaaaagaatatctttttcta 27464257  T
Q  268 tataagttacaagacggtcatttagccaccgattacccattt 309  Q
    |||||||||||||||||| |||||||||| ||| ||||||||    
T  27464256 tataagttacaagacggttatttagccactgatcacccattt 27464215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 8064983 - 8065111
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||  ||||| |||| |||| |||||||||||||||||| |||    
T  8064983 cattgtttgatacaatacattacaatgaaaatcgtctcctatccattggttgagaatgagcgaaaatgacatcattgctaattgttaaaagaacatctct 8065082  T
Q  263 ttctatataagttacaagacggtcattta 291  Q
    || ||||||||||| ||||||||||||||    
T  8065083 ttttatataagttataagacggtcattta 8065111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 168 - 292
Target Start/End: Complemental strand, 9539711 - 9539587
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttcta 267  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||| || |||| | |||||||||||| ||| ||||| ||    
T  9539711 tttgatacaatacattacaatgaaaatcatctcttatccatttgttgaaaatgagctaaaataatatcattgcttattgttaaaagatcatatcttttta 9539612  T
Q  268 tataagttacaagacggtcatttag 292  Q
    |||||||||| | ||||||||||||    
T  9539611 tataagttacgatacggtcatttag 9539587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 309
Target Start/End: Complemental strand, 10781234 - 10781125
Alignment:
Q  202 tatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttcta--tataagttacaagacggtcatttagccaccga 299  Q
    |||| ||||||||||||||||||||||| | ||  ||| |||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| ||    
T  10781234 tatccatttgttgaaaatgagttaaaatgaaatcgttgctaattgttaaaagaacatatctttctatatataagttacaagacggtcatttagccactga 10781135  T
Q  300 ttacccattt 309  Q
    | ||| ||||    
T  10781134 tcacctattt 10781125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 23353435 - 23353503
Alignment:
Q  207 atttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagtt 275  Q
    |||||||||||||||||||||||||||| |||| ||| | |||||||||||||||||||||||||||||    
T  23353435 atttgttgaaaatgagttaaaataacataattgctaaatattaaaagaacatttctttctatataagtt 23353503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 10781315 - 10781249
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacat 234  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||||||| | |||||| ||||    
T  10781315 tttgatacaatacattacaatgaaaatcgtcttatatctatttgttgaaaatgtgctaaaatgacat 10781249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 291
Target Start/End: Complemental strand, 14230171 - 14230082
Alignment:
Q  202 tatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcattta 291  Q
    |||| |||||||||||||||| |||||| | ||||||  ||| ||||  |||||||||||||||||||||  |||||||| | |||||||    
T  14230171 tatccatttgttgaaaatgagctaaaattatattattactaactgttttaagaacatttctttctatatatcttacaagatgatcattta 14230082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 34190029 - 34190157
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||  |||||| | || |||| |||||||||| ||||||| |||    
T  34190029 cattgtttgatacaatacattacaatgaaaatcgtctcctatccatttgttgaaaatgaactaaaatgatatcattgctaattgttaatagaacatctct 34190128  T
Q  263 ttctatataagttacaagacggtcattta 291  Q
    ||||||||||||||||||||  |||||||    
T  34190129 ttctatataagttacaagacattcattta 34190157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 32032977 - 32033106
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||||||||||||||||| ||||||||||||| | |||| ||||||| ||||||||||||||| |||| | |  |||||||||||||||||| |||    
T  32032977 cattgtttgatacaatacattagaatgaaaatcgtcgcctatccatttgttaaaaatgagttaaaatgacatcagtactaattgttaaaagaacatctct 32033076  T
Q  263 ttctatataagttacaagacggtcatttag 292  Q
    ||||||||||||||||||| ||||| ||||    
T  32033077 ttctatataagttacaagatggtcaattag 32033106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 7700342 - 7700487
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||||||||||||||| ||||||||||| |||| |||  || ||||||||||||| |||||| |||| |||| ||||||||||||||||| ||||    
T  7700342 cattgtttgatacaatacattgcaatgaaaatcatctcatattcatatgttgaaaatgagctaaaatgacatcattgctaattgttaaaagaaca-ttct 7700440  T
Q  263 ttctatataagttacaagacggtcatttagccaccgattacccattt 309  Q
    ||||||||||||||||||||  |||| ||||||| ||| ||| ||||    
T  7700441 ttctatataagttacaagacaatcatctagccacagatcacctattt 7700487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 18703743 - 18703628
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||||||||| ||||| |||| ||||||| ||||||||  ||||||| |  |||| |||||||||||||||||| |||||||| ||||||||||||    
T  18703743 attacaatgaaaattgtctcctatccatttgttaaaaatgagcaaaaataaaaacattgctaattgttaaaagaacatctctttctaaataagttacaag 18703644  T
Q  281 acggtcatttagccac 296  Q
    ||||||||||| ||||    
T  18703643 acggtcatttatccac 18703628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 194 - 293
Target Start/End: Complemental strand, 3357161 - 3357063
Alignment:
Q  194 tcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcatttagc 293  Q
    ||||||| |||| |||||||||||||||| |||||| |||| |||| |||||||||||| ||||| |||||||||||||||||||||||||| |||||||    
T  3357161 tcgtctcctatccatttgttgaaaatgagataaaatgacatcattgctaattgttaaaa-aacatctctttctatataagttacaagacggtgatttagc 3357063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 34878698 - 34878614
Alignment:
Q  207 atttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcattta 291  Q
    ||||||||||||||||||||||  || | ||||||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  34878698 atttgttgaaaatgagttaaaaagacgtcattgttaattgttaaaagaacatatatttctatataagttacaagacgatcattta 34878614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 4075463 - 4075591
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||||||||||||||   |||||||||||||||||||| || |||||||| | |  ||||||| |||||||||| |||||| ||| ||||||||||    
T  4075463 attacaatgaaaatcgtctgccatcaatttgttgaaaatgagctagaataacatcagtactaattgtgaaaagaacatctctttcaataaaagttacaag 4075562  T
Q  281 acggtcatttagccaccgattacccattt 309  Q
     || ||||||| |||  ||| ||||||||    
T  4075563 ccgatcatttaaccattgatcacccattt 4075591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 181 - 291
Target Start/End: Complemental strand, 27447788 - 27447679
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||||||||| ||||| |||| |||| ||| ||| ||| |||||||||| ||| | ||||| |||||||||||||||| |||||||||| ||||||    
T  27447788 attacaatgaaaattgtctcatatctatttattggaaacgagctaaaataacaatatagctaatt-ttaaaagaacatttctctctatataagctacaag 27447690  T
Q  281 acggtcattta 291  Q
    || || |||||    
T  27447689 acagtaattta 27447679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 38417798 - 38417888
Alignment:
Q  169 ttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacat 258  Q
    ||||| ||||||| ||||| ||||||| ||||| |||| ||||||||||||||| |||||||| ||  |||||||| | | ||||||||||    
T  38417798 ttgatgcaatacaattacagtgaaaattgtctcctatccatttgttgaaaatgatttaaaatagcaacattgttaactttcaaaagaacat 38417888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 291
Target Start/End: Complemental strand, 41009796 - 41009712
Alignment:
Q  207 atttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtcattta 291  Q
    ||||||||||| ||||| ||||| |||| |||  | ||||||  |||||||| ||||||||||||  ||| |||||| |||||||    
T  41009796 atttgttgaaattgagtcaaaattacatcatttcttattgttctaagaacatctctttctatatacattataagacgatcattta 41009712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 6e-28; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 6689213 - 6689316
Alignment:
Q  168 tttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttcta 267  Q
    ||||||||||||||||||||||||||||||||| |||| |||| |||||| |||| |||||| |||| |||| |||||||||||||| ||| ||||||||    
T  6689213 tttgatacaatacattacaatgaaaatcgtctcctatccatttattgaaattgagctaaaatgacatcattgctaattgttaaaagatcatctctttcta 6689312  T
Q  268 tata 271  Q
    ||||    
T  6689313 tata 6689316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 18816933 - 18817061
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    ||||||||||||||||||| | ||| |||||||||||||||| || |||||||| | || ||||||| |||||||||| |||||| ||| ||||||||||    
T  18816933 attacaatgaaaatcgtctgtcatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaag 18817032  T
Q  281 acggtcatttagccaccgattacccattt 309  Q
     || ||||||| |||  ||| ||||||||    
T  18817033 ccgatcatttaaccattgatcacccattt 18817061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 177 - 309
Target Start/End: Original strand, 30705305 - 30705437
Alignment:
Q  177 atacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagtta 276  Q
    ||||| |||||| |||||||||| ||||| |||||||||| |||| |||||||||| | | |||||||||| ||||||| || ||||||| | || ||||    
T  30705305 atacaatacaataaaaatcgtctattatccatttgttgaacatgatttaaaataacttcaatgttaattgtgaaaagaaaatatctttctgtgtatgtta 30705404  T
Q  277 caagacggtcatttagccaccgattacccattt 309  Q
    ||||| |||||||||||||| ||| ||| ||||    
T  30705405 caagatggtcatttagccactgatcaccgattt 30705437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 14607865 - 14607737
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| |||||||||||||||||||||||||||  |||| |||| |||||||||||||||| ||||||||||| |||  | |||||||||| | ||| |||    
T  14607865 cattgtttgatacaatacattacaatgaaaattttctcctatccatttgttgaaaatgagctaaaataacatcatttcttattgttaaaa-atcatatct 14607767  T
Q  263 ttctatataagttacaagacggtcatttag 292  Q
    ||| ||| ||||||||| ||  ||||||||    
T  14607766 ttcaatacaagttacaatacattcatttag 14607737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 163 - 292
Target Start/End: Original strand, 21883260 - 21883389
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttct 262  Q
    |||| ||| ||||||| ||||||||||||||||||||  |||| ||||||||||||||||  ||||| |||  |||| |||||||| | |||| || |||    
T  21883260 cattgtttaatacaatgcattacaatgaaaatcgtcttctatccatttgttgaaaatgagaaaaaatgacagcattgctaattgtttatagaatatctct 21883359  T
Q  263 ttctatataagttacaagacggtcatttag 292  Q
    ||||||||||||||||| | ||||| ||||    
T  21883360 ttctatataagttacaacagggtcaattag 21883389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 16461732 - 16461644
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaa 251  Q
    |||| |||||||||||| |||||||||||||| ||||| |||  |||||||||||||||| | |||| |||| ||||||||||||||||    
T  16461732 cattgtttgatacaatatattacaatgaaaattgtctcctattcatttgttgaaaatgagcttaaatgacatcattgttaattgttaaa 16461644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 309
Target Start/End: Original strand, 24901708 - 24901830
Alignment:
Q  187 atgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagacggtc 286  Q
    |||||||||||||   ||| |||||||||||||||| || |||||||| | || ||||||| |||||||||| |||||| ||| |||||||||| || ||    
T  24901708 atgaaaatcgtctgccatccatttgttgaaaatgagctagaataacatcagtgctaattgtgaaaagaacatctctttcaataaaagttacaagccgatc 24901807  T
Q  287 atttagccaccgattacccattt 309  Q
    ||||| |||  ||| ||||||||    
T  24901808 atttaaccattgatcacccattt 24901830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 33704117 - 33704205
Alignment:
Q  163 cattatttgatacaatacattacaatgaaaatcgtctcttatcaatttgttgaaaatgag-ttaaaataacattattgttaattgttaa 250  Q
    |||| ||||||||||||||||||||| ||||| ||||  |||| ||||||| |||||||| | ||||| |||| |||||||||||||||    
T  33704117 cattgtttgatacaatacattacaataaaaattgtcttctatctatttgttaaaaatgagctaaaaatgacatcattgttaattgttaa 33704205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 35188058 - 35188102
Alignment:
Q  169 ttgatacaatacattacaatgaaaatcgtctcttatcaatttgtt 213  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  35188058 ttgatacaatacattacaatgaaaatcgtctcttatccatttgtt 35188102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 258
Target Start/End: Complemental strand, 1975334 - 1975260
Alignment:
Q  184 acaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacat 258  Q
    ||||||||||| ||||| | || ||||| ||||||||||||||||||| |  |||| ||||| ||||||||||||    
T  1975334 acaatgaaaattgtctcatgtctatttgatgaaaatgagttaaaataatagcattgctaatttttaaaagaacat 1975260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 276
Target Start/End: Complemental strand, 8150817 - 8150758
Alignment:
Q  216 aaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagtta 276  Q
    ||||||| ||||||||||| | || ||||||| |||||||||||| |||||||||||||||    
T  8150817 aaatgagctaaaataacatcaatgctaattgtgaaaagaacattt-tttctatataagtta 8150758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 8150880 - 8150820
Alignment:
Q  163 cattatttgatacaataca-ttacaatgaaaatcgtctcttatcaatttgttgaaaatgag 222  Q
    |||| |||||| ||||||| ||||||| ||||||||||  |||| ||||||||||||||||    
T  8150880 cattgtttgatgcaatacaattacaataaaaatcgtctactatccatttgttgaaaatgag 8150820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 181 - 295
Target Start/End: Complemental strand, 928 - 814
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||||||||||||||  |||    |||||||||||||| |||| |||||| |||| ||||||| |||||||||| |||||||||||||||||||||    
T  928 attacaatgaaaatcgtctactattcgattgttgaaaatgagctaaactaacatcattgctaattgtcaaaagaacatatctttctatataagttacaag 829  T
Q  281 acggtcatttagcca 295  Q
    | |||||||||||||    
T  828 atggtcatttagcca 814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 4149 - 4227
Alignment:
Q  204 tcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagac 282  Q
    |||||| ||||||||||||||||||| |||| |||  ||||| ||  |||||||| |||||||||||| ||||||||||    
T  4149 tcaattagttgaaaatgagttaaaattacataattactaattattttaagaacatctctttctatatatgttacaagac 4227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 282
Target Start/End: Complemental strand, 3969 - 3891
Alignment:
Q  204 tcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaagac 282  Q
    |||||| ||||||||||||||||||| |||| |||  ||||| ||  |||||||| |||||||||||| ||||||||||    
T  3969 tcaattagttgaaaatgagttaaaattacataattactaattattttaagaacatctctttctatatatgttacaagac 3891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 289
Target Start/End: Original strand, 9694 - 9800
Alignment:
Q  181 attacaatgaaaatcgtctcttatcaatttgttgaaaatgagttaaaataacattattgttaattgttaaaagaacatttctttctatataagttacaag 280  Q
    |||||||| ||||| ||||  |||  |||||||||||  |||||||| |||||  ||||||||||||||||  |||||  ||| ||||||||||||||||    
T  9694 attacaataaaaattgtcttatattgatttgttgaaa--gagttaaagtaacaacattgttaattgttaaattaacatcccttcctatataagttacaag 9791  T
Q  281 acggtcatt 289  Q
    || ||||||    
T  9792 acagtcatt 9800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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