View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_19 (Length: 336)
Name: NF12033_low_19
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 10559568 - 10559881
Alignment:
| Q |
1 |
agatctacgagatgaaggagggtgaaagtgtgggagggataatggtgtttactgaccaaatgttaaaattttatttgtgcgtggtagccatgaatgactt |
100 |
Q |
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| T |
10559568 |
agatctacgagatgaaggagggtgaaagtgtgggagggataatggtgtttactgaccaaatgttaaaattttatttgtgcgtggtagccatgaatgactt |
10559667 |
T |
|
| Q |
101 |
caaaaacaacgtctccaccactttgggattagtttttagtcctacatttccggtccaaaaacaaatcgaatgaaacaaatttgtactgcagg-nnnnnnn |
199 |
Q |
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| T |
10559668 |
caaaaacaacgtctccaccactttgggatcagtttttagtcctacatttccggtccaaaaacaaatcgaatgaaacaaatttgtactgcaggaaaaaaaa |
10559767 |
T |
|
| Q |
200 |
nttcacttgaaacaaatgaacattgcctggagtagatgagtagtttttaatgtaattaaaataaatgtatttatccaaatgggaatgtaaatcgaatatt |
299 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10559768 |
aatcacttgaaacaaatgaacattgccttgagtagatgagtagtttttaatgtaattaaaataaatgtatttatccaaatgggaatgtaaatcgaatatt |
10559867 |
T |
|
| Q |
300 |
tcacacatataact |
313 |
Q |
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|||||||||||||| |
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| T |
10559868 |
tcacacatataact |
10559881 |
T |
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