View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_2 (Length: 890)
Name: NF12033_low_2
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 430 - 692
Target Start/End: Original strand, 6138698 - 6138961
Alignment:
| Q |
430 |
gtggttgttattgaattcttacggcaaggtggctcctaagaaataccaagagttaaaatttctattgaaagtaatttataa-gnnnnnnngaaaatgtgt |
528 |
Q |
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| T |
6138698 |
gtggttgttattgaattcttacggcaaggtgactcctaagaaataccaagagttaaaatttctattgaaagtaatttataaagaaaaaaagaaaatgtgg |
6138797 |
T |
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| Q |
529 |
atatgtatctcactcaacttttaagaattgtttttgtctcagatagtgacatattcaatgttaagtctgataaaaataagagaagcaaacatgtgtgtga |
628 |
Q |
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| T |
6138798 |
atatgtatctcactcaacttttaagatttgtttttgtctcagatagtgacatattcgatgttaagtccgataaaaataagagaagcaaacatgtgtgtga |
6138897 |
T |
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| Q |
629 |
ctccgctcaattttttgtttgttacgtaagtaaagttactttttcttgcaagtcaaggagggac |
692 |
Q |
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| T |
6138898 |
ctccgctcaatttttagtttgttacgtaagtaaagttactttttcttacaagtcaatgagggac |
6138961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 160 - 365
Target Start/End: Original strand, 6138428 - 6138633
Alignment:
| Q |
160 |
gatgcaagttataaggttcactatgaagtagatccgtacttgaaaattgtctaaaagtttatcgacttctttattgtaatgtttgagacaatgacttgct |
259 |
Q |
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| T |
6138428 |
gatgcaagttataaggttcactatgaagtagatccatacttgaaaattgtctaaaagtttatcgacttccttattgtaatgtttgagacaatgacttgct |
6138527 |
T |
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| Q |
260 |
cgatgttaatttgccaaaaacagaaaaagcaaacatgtgtgactccgctctannnnnnngtttgttatgtaagtaaagtaacttttcttgcaagttaagg |
359 |
Q |
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| T |
6138528 |
cgatgttaatttgccaaaaacagaaaaagcaaacatgtgtgactccgctctatttttttgtttgttatgtaagtaaagtaacttttcttgcaagtcaagg |
6138627 |
T |
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| Q |
360 |
agggac |
365 |
Q |
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| T |
6138628 |
aaggac |
6138633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 757 - 882
Target Start/End: Original strand, 6139026 - 6139152
Alignment:
| Q |
757 |
ggtggttgttattgaattcttatagctaggtggctcctaaaaaataccaagagttnnnnnnntaaaa-ttgaagaggctaccaagagttaaaatcagtac |
855 |
Q |
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| T |
6139026 |
ggtggttgttattgaattcttatagctaggtggctcctaaaaaataccaagagttaataaaaaaaaaattgaagaggctaccaagagttaaaatcagtac |
6139125 |
T |
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| Q |
856 |
tgaactttcaagaactgtcttcatctc |
882 |
Q |
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| T |
6139126 |
tgaactttcaagaactgtcttcatctc |
6139152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 6138286 - 6138364
Alignment:
| Q |
18 |
aggaaatagatcaggtcggttcttggaaacacccttgccttgtcatcacaactgtaatgcctgcaatttttgttatcct |
96 |
Q |
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| T |
6138286 |
aggaaatagatcaggtcggttcttggaaacacccttgccttgtcatcacaactgtaatgcctgcaatttttgttatcct |
6138364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 622 - 692
Target Start/End: Original strand, 6138563 - 6138633
Alignment:
| Q |
622 |
tgtgtgactccgctcaatttt-ttgtttgttacgtaagtaaagttactttttcttgcaagtcaaggagggac |
692 |
Q |
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| T |
6138563 |
tgtgtgactccgctctatttttttgtttgttatgtaagtaaagtaac-ttttcttgcaagtcaaggaaggac |
6138633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 430 - 485
Target Start/End: Original strand, 6139027 - 6139082
Alignment:
| Q |
430 |
gtggttgttattgaattcttacggcaaggtggctcctaagaaataccaagagttaa |
485 |
Q |
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| T |
6139027 |
gtggttgttattgaattcttatagctaggtggctcctaaaaaataccaagagttaa |
6139082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 758 - 811
Target Start/End: Original strand, 6138698 - 6138751
Alignment:
| Q |
758 |
gtggttgttattgaattcttatagctaggtggctcctaaaaaataccaagagtt |
811 |
Q |
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| T |
6138698 |
gtggttgttattgaattcttacggcaaggtgactcctaagaaataccaagagtt |
6138751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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