View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_20 (Length: 310)
Name: NF12033_low_20
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 8485176 - 8485462
Alignment:
| Q |
18 |
tttagcacaatacactcttaacgtgcttcacaccaatacgtccaatacactcactctaatcaacaaactaatcgcacaaagtggtagtgatcccaagaaa |
117 |
Q |
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| T |
8485176 |
tttagcacaatacacccttaacgtgcttcacaccaatacgtccaatacactcactctaatcaacaaactaatcgcacaaagtggtagtgatcccaagaaa |
8485275 |
T |
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| Q |
118 |
caaaaccattacaaggattgtttggctttatttggtgtggagtataaaggagttcttggatatgttcttgattccctaaaacaattcaaaaattccaagt |
217 |
Q |
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| T |
8485276 |
caaaaccattacaaggattgtttggctttatttggtgtggagtataaaggagttcttggatatgttcttgattccctaaaacaattcaaaaattccaagt |
8485375 |
T |
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| Q |
218 |
tcaatcaagtgggtgtggatatggtttatctcaggttccatgttgatgactgtatttcaggggatccatctgatacctctctgcttc |
304 |
Q |
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| T |
8485376 |
tcaatcaagtgggtgtggatatggtttatctcaggttccatgttgatgactgtatttcaggggatccatctgatacctctttgcttc |
8485462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 8492530 - 8492813
Alignment:
| Q |
18 |
tttagcacaatacactcttaacgtgcttcacaccaatacgtccaatacactcactctaatcaacaaactaatcgcacaaagtggtagtgatcccaagaaa |
117 |
Q |
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| T |
8492530 |
tttagcacaatacacccttgacgtgcttcacaccaatgtgtcaaatacactcactctaatcacaaaactaattacacaaagtggtagtgatcccaagaaa |
8492629 |
T |
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| Q |
118 |
caaaaccattacaaggattgtttggctttatttggtgtggagtataaaggagttcttggatatgttcttgattccctaaaacaattcaaaaattccaagt |
217 |
Q |
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| T |
8492630 |
caaaaccattacaaggattgtttggcttattttggt---gaggatgaaggagttcttggttatgttctacattcccttaaacacttcaaacattccgatt |
8492726 |
T |
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| Q |
218 |
tcaatcaagtgggtgtggatatggtttatctcaggttccatgttgatgactgtatttcaggggatccatctgatacctctctgcttc |
304 |
Q |
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| T |
8492727 |
tcaatcaagtgggtgtggatatggtttatctcgaattcaatgttgaaaactgtattttaagtgattcatctgatacctctttgcttc |
8492813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 8503743 - 8503860
Alignment:
| Q |
22 |
gcacaatacactcttaacgtgcttcacaccaatacgtccaatacactcactctaatcaacaaactaatcgcacaaagtggtagtgatcccaagaaacaaa |
121 |
Q |
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| T |
8503743 |
gcacaatacaccattgacgtgcttcataccaatgtatcgaatacagtcactctaatcacaaaactaatcgcacaaagtggcagtgatcgcaacaaacaag |
8503842 |
T |
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| Q |
122 |
accattacaaggattgtt |
139 |
Q |
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| T |
8503843 |
accattacaagaattgtt |
8503860 |
T |
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