View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12033_low_22 (Length: 279)
Name: NF12033_low_22
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 12274516 - 12274755
Alignment:
| Q |
5 |
gaggagaagagatcaagtattcgcgagttagtatttatagtatatctttaaggtttcgcttctttaacctttacttggacagctgtcctttaaagataat |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12274516 |
gaggagaagagatcaagtattcgcgagttagtatttatagtatatctttaaagtttcgcttcttcaacctttacttggacagctgtcctttaaagacaat |
12274615 |
T |
|
| Q |
105 |
tgtagtccttaatggaagcttgtgaacagattatgaaaaattacctcaaatccgaaccagaaggtccatatcatttccaggggtcacagttcccgtgcgg |
204 |
Q |
| |
|
|||||||||||| ||| || |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12274616 |
tgtagtccttaagggacgcctgtgaatagattatgaaaaattacctcaaatccgaactagaaggtccatatcatttccaggggtcacagttcccgtgcga |
12274715 |
T |
|
| Q |
205 |
tcctacgtgaggtgcatatcatggttccttacaagacttt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12274716 |
tcctacgtgaggtgcatatcatggttccttacaaggcttt |
12274755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University