View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12033_low_3 (Length: 670)
Name: NF12033_low_3
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12033_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 36956728 - 36956284
Alignment:
| Q |
13 |
atggacatcatacacataactgatcaaacctacgctgctcagctccaaaaatagacatataacaaaagcaaatttcgctcatcaattaatatatgcaaaa |
112 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36956728 |
atggatatcatacacataactgatcaaacctacgctgctcagctccagaaatagacatataacaaaagcaaatttcgctcatcaattaatatatgcaaaa |
36956629 |
T |
|
| Q |
113 |
acaaaacaaaataggtcaaattactataacaccacggacaattaagaatgcattatgtaaaatatcacaaaaacaaattattgatcaacaaaagatatta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36956628 |
acaaaacaaaataggtcaaattactataacaccacggacaattaagaatgcattatgtaaaatatcacaaaaacaaattgttgatcaacaaaagatatta |
36956529 |
T |
|
| Q |
213 |
agacaacacattacaattctatcatctaaaataagcaattaggcaaacaaaaaatcaaatcatctattccattttgtgatcatcaacaaatctttcaaaa |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36956528 |
agacaacacattacaattctatcatctaaaataagcaattaggcaaacaaaaaatcaaatcatctattccattttgtgatcatcaaaaaatctttcaaaa |
36956429 |
T |
|
| Q |
313 |
tcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtcgtcaa-aaaatagtaaatcatatcatacaaatacattattcaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
36956428 |
tcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtcgtcaaaaaaatagtaaatcatatcatacaaatacattattcaa |
36956329 |
T |
|
| Q |
412 |
caaatcaacccatcaaattatcataattgaagaacaatgtcagct |
456 |
Q |
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| T |
36956328 |
caaatcaacccatcaaattatcataattgaagaacaatgtcagct |
36956284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 13 - 453
Target Start/End: Complemental strand, 36971064 - 36970626
Alignment:
| Q |
13 |
atggacatcatacacataactgatcaaacctacgctgctcag-ctccaaaaatagacatataacaaaagcaaatttcgctcatcaattaatatatgcaaa |
111 |
Q |
| |
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||||| ||||| |||||||| |||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
36971064 |
atggatatcatgcacataaccgatcaaacctacactgctcaggctccagaaatagacatataacaaaagaaaatttcgctcatcgattaatatatgcaaa |
36970965 |
T |
|
| Q |
112 |
aacaaaacaaaataggtcaaattactataacaccacggacaattaagaatgcatt-atgtaaaatatcacaaaaacaaattattgatcaacaaaagatat |
210 |
Q |
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| T |
36970964 |
aacaaaacaaaataggtcaaattactataacaccacagacaattaagaatgcattcatgtaaaatatcacaaaa--aaattgttgatcaacaaaagaaat |
36970867 |
T |
|
| Q |
211 |
taagacaacacattacaattctatcatctaaaataagcaattagg-caaacaaaaaatcaaatcatctattccattttgtgatcatcaacaaatctttca |
309 |
Q |
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|| ||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||||||||| |||| | || |
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| T |
36970866 |
taggacaacacattccaattctatcatttaaaataagcaattaggccaaaaaaaaaatcaaatcatctcttccattttatgatcatcaactaatcatgca |
36970767 |
T |
|
| Q |
310 |
aaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtcgtcaaaaaatagtaaatcatatcatacaaatacattattc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||| |
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| T |
36970766 |
aaatcaatgctaaatctgataagtaattttagttttatactccatattactaattacgtc--aactaaatagtaaatcatatcatactaatccattattc |
36970669 |
T |
|
| Q |
410 |
aacaaatcaacccatcaaattatcataattgaagaacaatgtca |
453 |
Q |
| |
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|||||||||||||||||| | |||| ||||| |||||||||||| |
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|
| T |
36970668 |
aacaaatcaacccatcaattgatcaaaattg-agaacaatgtca |
36970626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 588 - 651
Target Start/End: Complemental strand, 36956187 - 36956124
Alignment:
| Q |
588 |
attaccttgacagcgagagtggggctgcgggtatgatcatcgggaacgacgacataatcagcca |
651 |
Q |
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| T |
36956187 |
attaccttgacagcgagagtggggctgcgggtatgatcatcgggaacgacgacataatcagcca |
36956124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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