View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12033_low_31 (Length: 215)

Name: NF12033_low_31
Description: NF12033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12033_low_31
NF12033_low_31
[»] chr2 (3 HSPs)
chr2 (9-79)||(29732190-29732260)
chr2 (75-127)||(29733107-29733159)
chr2 (131-200)||(29733227-29733296)


Alignment Details
Target: chr2 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 29732190 - 29732260
Alignment:
Q  9 agatattgtggaaattaatagcatcggaagttatcttcgaatacctaaataaggaactgtttctgtgtgtt 79  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||    
T  29732190 agatattgtgaaaattaatagcatcggaagttatcttcgaatacctaaacaagggactatttctgtgtgtt 29732260  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 29733107 - 29733159
Alignment:
Q  75 gtgttgagccaaggacccaaggcatgccaaagcgaacttaaaccaatgcgcca 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29733107 gtgttgagccaaggacccaaggcatgccaaagcgaacttaaaccaatgcgcca 29733159  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 29733227 - 29733296
Alignment:
Q  131 acccactcgtgaacgggcttggtcataggctaataaccatcttcgacactgcatagttatgtatgactgt 200  Q
    |||||||| ||| || ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  29733227 acccactcatgaccgagcttggtcataggctaataaccatcttcgacactgtataattatgtatgactgt 29733296  T

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